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How Medicine is becoming
a changing Big-Data Field
Ted Driscoll, Ph.D.
Managing Partner
DigitalDx Ventures
In the last 60 years…
• Doctors used to make diagnoses based on
inferences from limited data
• Now they have too much data to absorb
– My grandson was BORN two years ago with more
than a gigabyte already in his EMR!
What really makes us different?
A Human Being
Weight is ~150 lbs
What is he made of (by mass)?
Oxygen = 97.5 lbs
Carbon = 27.75 lbs
Hydrogen = 14.25 lbs
Nitrogen = 4.8 lbs
Calcium = 2.25 lbs
The rest = ~ 2 lbs
Phosphorus = 1.5 lbs
A Dog (Great Dane)
Weight is ~150 lbs
What is he made of (by mass)?
Oxygen = 97.5 lbs
Carbon = 27.75 lbs
Hydrogen = 14.25 lbs
Nitrogen = 4.8 lbs
Calcium = 2.25 lbs
The rest = ~ 2 lbs
Phosphorus = 1.5 lbs
So what makes mammals
different?
• How those atoms are organized.
• What is attached to what.
• How they pass around energy.
• How our bodies change each day
• This is INFORMATION
Molecular Informational Differences
Cells in Human Body ~100 Trillion Grows as we mature
Genome in each cell ~3.1 Billion Base Pairs Mostly stable
Epigenome Millions (?) Changes slowly
Microbiome Up to 1 Quadrillion Changes daily
Immune Cells ~1-5 Billion Cells Changes slowly
Virome Billions (?) Changes daily
Communicome Millions (?) Changes slowly
Proteome Millions (?) Changes daily
It’s all code
• Computer code is binary. (0s and 1s)
• Genetics code is quaternary. (As, Cs, Ts & Gs)
Today
• A doctor has less time per patient
– Gigantic EMRs for each patient
– Soon a whole genome for each patient
– And epigenomes, microbiomes, nucleomes,
immunicomes, communicomes, proteomes, …
– And we are being exposed to many chemicals in
our food, toothpaste, shampoo, etc.
• Every patient is now recognized as unique
Personalized Medicine
• Big Realization: We are all slightly different!
• Every individual needs a custom drug or
treatment now.
• Determining that targeting is a big data
problem.
• Vast data mining is coming to medicine.
• Doctors will need help from AI.
Where is this going?
• Today the doctor is swamped with
information.
• Inevitably, Artificial Intelligence will become
involved.
– Help the doctor see what is important
– And advise the doctor on best courses of action
Steering Evolution
• For millennia, humans have been leveraging
selection to slowly optimize genetics
– Corn
– Grains
– Dairy
– Pets
Reading
• In the past two decades, we’ve been ”reading”
our genomes and life’s genomes.
• Seeing defects and predispositions
• Identifying mutations
• Detecting pathogens
• Identifying susceptibilities
Now we are “Seizing The Steering
Wheel of Evolution”
• We can now write the genome.
• Writing the code of life is enormously powerful
• Four ways to do it:
– Zinc finger nucleases (ZFNs)
– Transcription Activator-Like Effector-based
Nucleases (TALEN)
– CRISPR-Cas9 system
– Mega-nucleases
This raises Ethical Issues
• Designer Babies?
• Gene Drives That Disrupt Ecosystems?
• The Law of Unforeseen Consequences
Impact Areas
• Where will these technologies make an impact?
– Human Germline (correcting genetic birth defects)
– Mutations during life (cancer, aging, neurodegenerative &
auto immune diseases)
– Food-related Products (plants, animals, etc.)
– Bacterial/Viral organisms (microbiomes, pathogens)
• And soon we will be monitoring our bodies
continuously with wearables
– Our EMR will become a live dashboard

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How Medicine is becoming a changing Big-Data Field

  • 1. How Medicine is becoming a changing Big-Data Field Ted Driscoll, Ph.D. Managing Partner DigitalDx Ventures
  • 2. In the last 60 years… • Doctors used to make diagnoses based on inferences from limited data • Now they have too much data to absorb – My grandson was BORN two years ago with more than a gigabyte already in his EMR!
  • 3. What really makes us different?
  • 4. A Human Being Weight is ~150 lbs What is he made of (by mass)? Oxygen = 97.5 lbs Carbon = 27.75 lbs Hydrogen = 14.25 lbs Nitrogen = 4.8 lbs Calcium = 2.25 lbs The rest = ~ 2 lbs Phosphorus = 1.5 lbs
  • 5. A Dog (Great Dane) Weight is ~150 lbs What is he made of (by mass)? Oxygen = 97.5 lbs Carbon = 27.75 lbs Hydrogen = 14.25 lbs Nitrogen = 4.8 lbs Calcium = 2.25 lbs The rest = ~ 2 lbs Phosphorus = 1.5 lbs
  • 6. So what makes mammals different? • How those atoms are organized. • What is attached to what. • How they pass around energy. • How our bodies change each day • This is INFORMATION
  • 7. Molecular Informational Differences Cells in Human Body ~100 Trillion Grows as we mature Genome in each cell ~3.1 Billion Base Pairs Mostly stable Epigenome Millions (?) Changes slowly Microbiome Up to 1 Quadrillion Changes daily Immune Cells ~1-5 Billion Cells Changes slowly Virome Billions (?) Changes daily Communicome Millions (?) Changes slowly Proteome Millions (?) Changes daily
  • 8. It’s all code • Computer code is binary. (0s and 1s) • Genetics code is quaternary. (As, Cs, Ts & Gs)
  • 9. Today • A doctor has less time per patient – Gigantic EMRs for each patient – Soon a whole genome for each patient – And epigenomes, microbiomes, nucleomes, immunicomes, communicomes, proteomes, … – And we are being exposed to many chemicals in our food, toothpaste, shampoo, etc. • Every patient is now recognized as unique
  • 10. Personalized Medicine • Big Realization: We are all slightly different! • Every individual needs a custom drug or treatment now. • Determining that targeting is a big data problem. • Vast data mining is coming to medicine. • Doctors will need help from AI.
  • 11. Where is this going? • Today the doctor is swamped with information. • Inevitably, Artificial Intelligence will become involved. – Help the doctor see what is important – And advise the doctor on best courses of action
  • 12. Steering Evolution • For millennia, humans have been leveraging selection to slowly optimize genetics – Corn – Grains – Dairy – Pets
  • 13. Reading • In the past two decades, we’ve been ”reading” our genomes and life’s genomes. • Seeing defects and predispositions • Identifying mutations • Detecting pathogens • Identifying susceptibilities
  • 14. Now we are “Seizing The Steering Wheel of Evolution” • We can now write the genome. • Writing the code of life is enormously powerful • Four ways to do it: – Zinc finger nucleases (ZFNs) – Transcription Activator-Like Effector-based Nucleases (TALEN) – CRISPR-Cas9 system – Mega-nucleases
  • 15. This raises Ethical Issues • Designer Babies? • Gene Drives That Disrupt Ecosystems? • The Law of Unforeseen Consequences
  • 16. Impact Areas • Where will these technologies make an impact? – Human Germline (correcting genetic birth defects) – Mutations during life (cancer, aging, neurodegenerative & auto immune diseases) – Food-related Products (plants, animals, etc.) – Bacterial/Viral organisms (microbiomes, pathogens) • And soon we will be monitoring our bodies continuously with wearables – Our EMR will become a live dashboard