This document contains genomic sequence data from three Pinus taeda clones (pal, cad, 4cl) that was analyzed for matches to transcription factor binding site matrices. Several high-scoring matches to matrices for transcription factors A. Myb and B. Myb were identified within the sequences, including matches with scores over 0.9. The matches are listed with their position and orientation within the sequences.

1. Pinus taeda
pal: genomic
clone
Pinus taeda
4cl: genomic
clone
Pinus taeda
cad: genomic
clone
TTACTACCTACCCCGAA -1716 (+) 0.928
CGTCTACCTACCCCCAT -1667 (+) 0.943
Sequence Identified Sequence Matrix
by MatInspector Position (& Similarity
Orientation)
TATACACCAACCCATTG -1062 (+) 0.872
TGCCCACCAACCCACTT -560 (-) 0.896
ATACTACCCAACTTGTT -480 (+) 0.860
ACCAGACCAACCAAGCA -208 (+) 0.864
GGATTACCAACCCTGAG -129 (-) 0.856
TCTCCACCAAACGACTG -96 (-) 0.910
CAAATACCTAACCCCAA -104 (+) 0.837
AAAAGACCTACCAATCT -50 (+) 0.902
ATGCAACCAACCCCTAC +945 (-) 0.864
ACAGGACCCAACAATGC +958 (-) 0.826
A. Myb 413 Matrix Matches: Matrix Threshold = 0.78
CCTCCACCCACTCACTC -1815 (-) 0.816
TGGCCACCAACTTTGCG -1792 (+) 0.814
TTACTACCTACCCCGAA -1716 (+) 0.960
CGTCTACCTACCCCCAT -1667 (+) 0.960
B. Myb 126 Matrix Matches: Matrix Threshold = 0.78
Sequence Identified Sequence Matrix
by MatInspector Position (& Similarity
Orientation)
TATACACCAACCCATTG -1062 (+) 0.867
GTCTCACCAACTCATGC -977 (+) 0.807
CACCAACCCACTTTGTA -564 (-) 0.808
TGCCCACCAACCCACTT -560 (-) 0.879
ATACTACCCAACTTGTT -480 (+) 0.793
TCCTTACCCACTTCATG -453 (-) 0.818
CTTCAACCAACTAAGAT -268 (+) 0.816
ACCAGACCAACCAAGCA -198 (+) 0.852
GGATTACCAACCCTGAG -129 (-) 0.867
TCTCCACCAAACGACTG -96 (-) 0.827
GGTCGACCTAATCTTGC -186 (-) 0.792
CAAATACCTAACCCCAA -104 (+) 0.837
AAAAGACCTACCAATCT -50 (+) 0.902
GACCTACCAATCTCCTT -46 (+) 0.808
TCGCTACCAATCTCTGT +900 (-) 0.797
ATGCAACCAACCCCTAC +945 (-) 0.864
CACAAACCTATCATATA +1225(-) 0.832
ATTCAACCAACTGTGCT +2690(-) 0.817
Pinus taeda
pal: genomic
clone
Pinus taeda
cad: genomic
clone
Pinus taeda
4cl: genomic
clone