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 Repeated drug exposure leads to brain neural 
adaptations.
 It is widely believe that these neural adaptations 
mediate the long lasting changes in behavior 
associated with substance use disorders (SUD).
 Additional neural adaptations may occur in 
response to periods of drug abstinence and 
may also contribute to SUD. 
 Our research looks for  neural  adaptations to 
cocaine exposure  that persist , or develop only, 
during long bouts of abstinence in rat models in 
order to
 better understand the neural mechanisms 
underlying behavioral changes in cocaine use 
disorders  (CUD).
 Identify neurochemical substrates that might 
provide targets for the development of 
pharmacological treatments against CUD. 
 Identify physiological markers of CUD.
 A database of proteins collected several years ago 
using new “shotgun” proteomic methods is used 
here. 
 In that initial study, protein expression in the brain 
of rats exposed to several weeks of repeated, daily 
cocaine and either a short (1 day) or long (21 days) 
bout of forced abstinence, was compared to a 
saline control group (See Sequence of Procedures).  
Protein changes in the striatum of the rat brain after short and long periods of forced abstinence from a 21‐day bout of 
repeated cocaine exposure
Pearl N. Guerin1,2, Mauricio Suarez2, & Alexis C. Thompson3
1Biological Sciences, 2Psychology,  3Research Institute on Addictions
Introduction
Methods
(Used for original data collection)
Results
Increased on Day 21
(Day 1, Day 21 ‐ % of  control levels)
Decrease on Day 21 
(Day 1, Day 21 ‐ % of control levels)
Pattern of Change 
suggests
No Change on 
Day 1
 Carbonic Anhydrase 2 (‐‐, 79%)*
 Gluthione S‐transferase P (‐‐, 73%)*
 Serum Albumin  (‐‐. 71%)**
 Stathmin (‐‐, 77%)**
Abstinence‐Induced 
Changes
(maybe)
Same Change
as Day 1
 G‐protein signaling modulator (130%, 129%)
 Calretinin (136%, 128%)
 Myelin Basic Protein (72%, 69%)**
Cocaine‐induced 
Persistent Changes
(likely)
Opposite 
Change to Day 
1 
 Adenylate Cyclase 5  (136%, 80%)*
 Clathrin Coat Assembly Protein (AP180) (231%, 79%)**
 Cofilin‐1 (140%, 74%)**
 Hemoglobin**
• Subunit Beta 1 (164%, 70%)
• Subunit Beta 2 (128%, 72%)
• Subunit Alpha ½ (136%, 72%)
Cocaine‐induce short 
lasting Changes 
+ 
Abstinence‐induced 
compensatory 
Changes
(likely)
28
15
6
3 4
1 0 0
29
12
7
3
1 0 0
3
0
5
3
0 0 0 0 0 0 0
2
7
4 4
6
2 3 3 4
7
0
5
10
15
20
25
30
35
40
Cell Signaling Cytoskeleton Intracellular
transport
RBC/Plasma Glucose
metabolism
Anti‐Oxidant Axonogenesis
Regulation
Protease inhibitor Unknown
WD1_Up WD1_Down WD21_Up WD21_Down
7
5 5
3 4 3 2 2
15
0 0 0 0
3
1
3 2
9
0 0 0 0 0 0 0 0 00 0 0 0 0 0 0 0
6
0
5
10
15
20
25
30
35
40
Chaperones Neurotransmitter
metabolism
Oxidative
phosphorylation
Cell motion Metobolism
Enzyme
Tricarboxylic acid
cycle
Cell adhesion Apoptosis
associated
Other
Functional annotation of the differential proteins identified in WD1 and WD21 (from Jiang et al., 2011 )
Jiang, X‐S, Li, J., Tu, C‐J, Suarez, M., Straubinger, R.M., Thompson, A.C., & Qu, J., Program number 
518.15. 2011 Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience., 2011. 
Online.
Shichen S. Jiang, X‐S., Li J., Straubinger, R.M., Suarez, M., Tu, C‐J., Duan, X‐T., Thompson, A.C., Qu, J. 
(In press, April 2016). Large‐Scale, Ion‐Current‐Based Proteomic Investigation of the Rat Striatal 
Proteome in a Model of Short‐ and Long‐Term Cocaine Withdrawal.  Journal of Proteomics .
Brady, S., Siegel, G., Albers, R. W., & Price, D. (Eds.). (2011). Basic neurochemistry: principles of 
molecular, cellular, and medical neurobiology. Academic Press.
My project focuses on those proteins that were found on both Day 1 and Day 21 and altered, at least, on Day 21
There were fewer…
*   Meets criterion 1 and 2 for significance.  Risk of Type 1 error likely greater than 0.05.
** Meets criterion 1 ,2 and 3 for significance. 
Using Criterion 1 and 2, the original study showed  that cocaine induced a large number  (223) of change in proteins in the rat striatum
1. Review literature on function of these target proteins.
2. Identify one protein to study further, based on function 
and interest to the lab. 
3. Use Western Blot technique and/or 
Immunohistochemistry to verify and more carefully 
evaluate the change in function.
4. Generate a hypothesis and test how it might work to 
mediate CUD.
 40 male rats were used; 60 days old at the start of 
the study. 
 Procedures: see Sequence of Procedures
 On Day 1 or Day 21 the brain of each rat was 
harvested and the striatum (dorsal and ventral) was 
removed and rapidly frozen for later analysis.
 Proteomic analysis of the striatal tissue was 
conducted by our collaborators Drs. Jun Qu and 
Robert Straubinger in Pharmaceutical Sciences 
using Comprehensive and Reproducible Ion‐
Current‐Based Proteomic Expression Profiling 
Strategy (Shichen et al., in press).
 Determination of significant differences between 
experimental and controls groups for the 
concentration of each identified protein used 
either 2 or 3 criteria: 
 Criterion 1: Quantitative differences between 
the experimental and control groups on each 
day were only consider if the experimental 
group protein levels were below 80.1% and 
above 124.9% of control levels. The range (80.1‐
124.9%) was defined by a series of control 
studies as the 99% confidence interval over 
which control values do vary. 
 Criterion 2: A p < 0.05 value in the t‐test 
comparison between the experimental and 
control group.
 Criterion 3: A p < 0.00001 allowing for the 
Bonferroni correction for the multiple t‐tests.
SEQUENCE OF PROCEDURES
5mg/kg 10mg/kg 15mg/kg 20mg/kg 30mg/kg
HISTORY (SALINE or COCAINE, 21 days)
24h
FORCED ABSTINENCE (1 day or 21 days)
Protein Class Function [Brady et al., 2011]
Carbonic Anydrase 2 Anti‐Oxidant
• Role in oxidative stress
• Anti‐oxidant enzyme
Glutathione S‐tranferase P Anti‐Oxidant 
• Role in oxidative stress
• Anti‐oxidant enzyme
Serum Albumin RBC/ Plasma
• Important for BBB oncotic pressure
• Regulation of blood plasma
Stathmin Cytoskeleton
• Role in cell cytoarchitechture
• Regulatory protein of microtubule 
dynamics
Calretinin Cell Signaling
• Calcium‐binding protein
• Role in second messenger pathways
G‐protein signaling 
modulator
Cell Signaling
• Facilitates G protein‐coupled 
receptors function
• Helps initiate second messengers 
pathways 
Myelin Basic Protein  Cell structure
• Integral component of myelin
• Facilitation of action potential 
propagation
Adenylate Cyclase 5  Cell Signaling
• Role in cAMP second messenger 
pathway
Clathrin Coat Assembly 
Protein 
Cell Signaling
• Role in Endocytosis
• Plasma membrane protein trafficking
• Role in recycling  neurotransmitter 
receptors 
Cofilin‐1 Cytoskeleton
• Actin‐binding protein 
• Depolymerizes actin filaments
• Role in plasticity
Hemoglobin Plasma 
• Role in oxygen transport
• Made in select dopamine neurons
Outcome from Initial  Analysis
Work in Progress
2 2
3
4
0
1
2
3
4
5
Antioxidant RBC/Plasma Cell Structure Cell Signalling
No. of Proteins/Class
Class of Proteins
References

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Proteomics Poster

  • 1.  Repeated drug exposure leads to brain neural  adaptations.  It is widely believe that these neural adaptations  mediate the long lasting changes in behavior  associated with substance use disorders (SUD).  Additional neural adaptations may occur in  response to periods of drug abstinence and  may also contribute to SUD.   Our research looks for  neural  adaptations to  cocaine exposure  that persist , or develop only,  during long bouts of abstinence in rat models in  order to  better understand the neural mechanisms  underlying behavioral changes in cocaine use  disorders  (CUD).  Identify neurochemical substrates that might  provide targets for the development of  pharmacological treatments against CUD.   Identify physiological markers of CUD.  A database of proteins collected several years ago  using new “shotgun” proteomic methods is used  here.   In that initial study, protein expression in the brain  of rats exposed to several weeks of repeated, daily  cocaine and either a short (1 day) or long (21 days)  bout of forced abstinence, was compared to a  saline control group (See Sequence of Procedures).   Protein changes in the striatum of the rat brain after short and long periods of forced abstinence from a 21‐day bout of  repeated cocaine exposure Pearl N. Guerin1,2, Mauricio Suarez2, & Alexis C. Thompson3 1Biological Sciences, 2Psychology,  3Research Institute on Addictions Introduction Methods (Used for original data collection) Results Increased on Day 21 (Day 1, Day 21 ‐ % of  control levels) Decrease on Day 21  (Day 1, Day 21 ‐ % of control levels) Pattern of Change  suggests No Change on  Day 1  Carbonic Anhydrase 2 (‐‐, 79%)*  Gluthione S‐transferase P (‐‐, 73%)*  Serum Albumin  (‐‐. 71%)**  Stathmin (‐‐, 77%)** Abstinence‐Induced  Changes (maybe) Same Change as Day 1  G‐protein signaling modulator (130%, 129%)  Calretinin (136%, 128%)  Myelin Basic Protein (72%, 69%)** Cocaine‐induced  Persistent Changes (likely) Opposite  Change to Day  1   Adenylate Cyclase 5  (136%, 80%)*  Clathrin Coat Assembly Protein (AP180) (231%, 79%)**  Cofilin‐1 (140%, 74%)**  Hemoglobin** • Subunit Beta 1 (164%, 70%) • Subunit Beta 2 (128%, 72%) • Subunit Alpha ½ (136%, 72%) Cocaine‐induce short  lasting Changes  +  Abstinence‐induced  compensatory  Changes (likely) 28 15 6 3 4 1 0 0 29 12 7 3 1 0 0 3 0 5 3 0 0 0 0 0 0 0 2 7 4 4 6 2 3 3 4 7 0 5 10 15 20 25 30 35 40 Cell Signaling Cytoskeleton Intracellular transport RBC/Plasma Glucose metabolism Anti‐Oxidant Axonogenesis Regulation Protease inhibitor Unknown WD1_Up WD1_Down WD21_Up WD21_Down 7 5 5 3 4 3 2 2 15 0 0 0 0 3 1 3 2 9 0 0 0 0 0 0 0 0 00 0 0 0 0 0 0 0 6 0 5 10 15 20 25 30 35 40 Chaperones Neurotransmitter metabolism Oxidative phosphorylation Cell motion Metobolism Enzyme Tricarboxylic acid cycle Cell adhesion Apoptosis associated Other Functional annotation of the differential proteins identified in WD1 and WD21 (from Jiang et al., 2011 ) Jiang, X‐S, Li, J., Tu, C‐J, Suarez, M., Straubinger, R.M., Thompson, A.C., & Qu, J., Program number  518.15. 2011 Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience., 2011.  Online. Shichen S. Jiang, X‐S., Li J., Straubinger, R.M., Suarez, M., Tu, C‐J., Duan, X‐T., Thompson, A.C., Qu, J.  (In press, April 2016). Large‐Scale, Ion‐Current‐Based Proteomic Investigation of the Rat Striatal  Proteome in a Model of Short‐ and Long‐Term Cocaine Withdrawal.  Journal of Proteomics . Brady, S., Siegel, G., Albers, R. W., & Price, D. (Eds.). (2011). Basic neurochemistry: principles of  molecular, cellular, and medical neurobiology. Academic Press. My project focuses on those proteins that were found on both Day 1 and Day 21 and altered, at least, on Day 21 There were fewer… *   Meets criterion 1 and 2 for significance.  Risk of Type 1 error likely greater than 0.05. ** Meets criterion 1 ,2 and 3 for significance.  Using Criterion 1 and 2, the original study showed  that cocaine induced a large number  (223) of change in proteins in the rat striatum 1. Review literature on function of these target proteins. 2. Identify one protein to study further, based on function  and interest to the lab.  3. Use Western Blot technique and/or  Immunohistochemistry to verify and more carefully  evaluate the change in function. 4. Generate a hypothesis and test how it might work to  mediate CUD.  40 male rats were used; 60 days old at the start of  the study.   Procedures: see Sequence of Procedures  On Day 1 or Day 21 the brain of each rat was  harvested and the striatum (dorsal and ventral) was  removed and rapidly frozen for later analysis.  Proteomic analysis of the striatal tissue was  conducted by our collaborators Drs. Jun Qu and  Robert Straubinger in Pharmaceutical Sciences  using Comprehensive and Reproducible Ion‐ Current‐Based Proteomic Expression Profiling  Strategy (Shichen et al., in press).  Determination of significant differences between  experimental and controls groups for the  concentration of each identified protein used  either 2 or 3 criteria:   Criterion 1: Quantitative differences between  the experimental and control groups on each  day were only consider if the experimental  group protein levels were below 80.1% and  above 124.9% of control levels. The range (80.1‐ 124.9%) was defined by a series of control  studies as the 99% confidence interval over  which control values do vary.   Criterion 2: A p < 0.05 value in the t‐test  comparison between the experimental and  control group.  Criterion 3: A p < 0.00001 allowing for the  Bonferroni correction for the multiple t‐tests. SEQUENCE OF PROCEDURES 5mg/kg 10mg/kg 15mg/kg 20mg/kg 30mg/kg HISTORY (SALINE or COCAINE, 21 days) 24h FORCED ABSTINENCE (1 day or 21 days) Protein Class Function [Brady et al., 2011] Carbonic Anydrase 2 Anti‐Oxidant • Role in oxidative stress • Anti‐oxidant enzyme Glutathione S‐tranferase P Anti‐Oxidant  • Role in oxidative stress • Anti‐oxidant enzyme Serum Albumin RBC/ Plasma • Important for BBB oncotic pressure • Regulation of blood plasma Stathmin Cytoskeleton • Role in cell cytoarchitechture • Regulatory protein of microtubule  dynamics Calretinin Cell Signaling • Calcium‐binding protein • Role in second messenger pathways G‐protein signaling  modulator Cell Signaling • Facilitates G protein‐coupled  receptors function • Helps initiate second messengers  pathways  Myelin Basic Protein  Cell structure • Integral component of myelin • Facilitation of action potential  propagation Adenylate Cyclase 5  Cell Signaling • Role in cAMP second messenger  pathway Clathrin Coat Assembly  Protein  Cell Signaling • Role in Endocytosis • Plasma membrane protein trafficking • Role in recycling  neurotransmitter  receptors  Cofilin‐1 Cytoskeleton • Actin‐binding protein  • Depolymerizes actin filaments • Role in plasticity Hemoglobin Plasma  • Role in oxygen transport • Made in select dopamine neurons Outcome from Initial  Analysis Work in Progress 2 2 3 4 0 1 2 3 4 5 Antioxidant RBC/Plasma Cell Structure Cell Signalling No. of Proteins/Class Class of Proteins References