Objective:
We are addressing a fundamental information gap on how belowground C-cycling is impacted by the replacement of native rangelands with non-native communities. Our specific objective is to determine if C cycling processes are altered by conversion of native to exotic-dominated grasslands using ongoing experiments and comparative studies.
14. perMANOVA and NMS (Bray Curtis distance matrix)
Source d.f F p
------------------------------------------------------
origin 1 1.51 0.012
irrig 1 1.17 0.168
Interac. 1 0.82 0.854
Residual 56
Source d.f. F p
--------------------------------------------------------
origin 1 1.62 0.017
irrig 1 1.11 0.267
Interac. 1 0.73 0.906
Residual 48
Source d.f. F p
---------------------------------------------------------------
origin 1 1.40 0.063
irrig 1 0.92 0.570
Interac. 1 1.63 0.017
Residual 56
N
ati
ve
Ex
oti
c
N
ati
ve
Ex
oti
c
Native
Exotic
2009 2014 2015
15. Fungal Pathogens 2014
Source d.f. SS MS F p
-----------------------------------------------------------------------------------
origin 1 0.395 0.395 1.62 0.017000
irrig 1 0.270 0.270 1.11 0.267000
Interac. 1 0.177 0.178 0.73 0.906000
Residual 48 11.67 0.243
Total 51 12.52
FDR_P E_mean N_mean taxonomy
0.03753 1.741935 55.2
k__Fungi; p__Ascomycota;
c__Dothideomycetes; o__Pleosporales;
f__Phaeosphaeriaceae;
g__Stagonospora; s__
Genus Stagonospora – some species are plant pathogens
16.
17. 5. N mineralization (feedback)
Time 1 Time 2 Time 3
Nmineralization
0
1
2
3
4
5
6
7
Exotic
Native
B
A
B
A
B
A
Averaged across times, 24% higher in native plots than exotic (origin, P < 0.001)
18. 6. Decomposition of litter, roots
Random draws
Exotic Native
Masspresent
0.90
0.92
0.94
0.96
0.98
Actual relative abundances
Exotic Native
Masspresent
0.90
0.92
0.94
0.96
0.98
Origin x Abundance type, P < 0.001
Top (triangles) - Native
Bottom (circles) - Exotic
21. Comparative Studies:
• Native and Exotic grasslands across
the tallgrass prairie region. N = 21 for
each.
• Sample 25 locations per site (100
points), estimate % native/exotic,
species diversity measures and
ecosystem services.
27. Acknowledgements
• Leanne Martin (Ph.D. student)
• Kaitlin Barber (Ph.D. student)
• Xia Xu (postdoc)
• Aleksandra Sielaff (postdoc)
• You (USDA – NIFA 2014-67003-22067)
Editor's Notes
Add Stirling and Wilsey, Wilsey and Stirling, Benuealas et al., dominant grasses
Novel Ecosystems
I was aware of the African species from my Ph.D. at Syracuse University
Fig. 1 Fungal diversity composition at the phylum taxonomy level. Each plot shows samples grouped by treatment combination: origin (native vs. exotic) and irrigation (non-irrigated vs. irrigated), and sorted by draw (1-8). The y axis shows the percentage of reads depicting each phylum.Top: 2009, Middle: 2014, Bottom: 2015.
Fig. 3 Nonparametric multidimensional scaling (NMS) based on Bray Curtis distance matrix constructed in PC-ORD (v. 5). The OTU table was rarefied to 10724, 7270, and 10083 sequences per sample for 2009, 2014, and 2015 respectively in QIIME. The singleton and doubleton OTUs were added up to single category “low abundance’ . The PERMANOVA does not run when the set of data is unbalanced that is why the samples from corresponding treatments for the samples that didn’t yield any sequencing results (2009: n=60, 2014: n=52, 2015; n=60). Biplots were calculated at the cut-off level: 0.25 (2009), 0.3 (2014) and 0.25 (2015). The output from two-factorial PERMANOVA for origin and irrigation as factors shows significance variance between samples originating from native and exotic plots, but there is no effect from irrigation treatment in each year. The combined effect of origin and irrigation is only seen in 2015 year.
Fig. 2 Least Square Means Estimate for Simpson’s Diversity Index (1-D) for fungal diversity. The Simpson’s Diversity Index was calculated in QIIME using command alpha_diversity.py and simpson _reciprocal metrics. The values was log transformed in SAS (v.9) and the Least Square Mean Estimate was calculated using proc mixed. There was no significance difference between Irrigated and Non-Irrigated plots in each year.