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SADIA NAZ
SENIOR LECTURER
BIOCHEMISTRY
GLYCOLYSIS AND ITS
REGULATION
Learning objectives
 List the enzymes and intermediates
involved in glycolysis
 List the irreversible and regulated
steps of glycolysis
 Discuss regulation of glycolysis
METABOLIC
PATHWAYS
CATABOLIC
PATHWAYS
Are involved in
oxidative breakdown
of larger complexes.
They are usually
exergonic in nature
ANABOLIC
PATHWAYS
Are involved in
the synthesis of
compounds.
They are usually
endergonic in
nature.
CHARACTERISTICS OF METABOLISM
1. Metabolic pathways are mostly
irreversible
2. Every metabolic pathway has a
committed first step.
3. All metabolic pathways are regulated.
4. Metabolic pathways in eukaryotic cells
occur in specific cellular locations.
GLYCOLYSIS
Glycolysis comes from a merge of two Greek
words:
Glykys = sweet
Lysis = breakdown/ splitting
It is also known as Embden-Meyerhof-Parnas
pathway or EMP pathway.
INTRODUCTION
• GLYCOLYSIS is the sequence of 10 enzyme-
catalyzed reactions that converts glucose into
pyruvate with simultaneous production of ATP.
• In this oxidative process, 1molecule of glucose
is partially oxidised to 2 molecules of pyruvate.
• This major pathway of glucose metabolism
occurs in the cytosol of all cell.
• This unique pathway occurs aerobically as
well as anaerobically.
• It also includes formation of Lactate from
Pyruvate.
• The glycolytic sequence of reactions differ
from species to species only in the
mechanism of its regulation & in the
subsequent metabolic fate of the pyruvate
formed.
• In aerobic organisms, glycolysis is the
prelude to Citric acid cycle and ETC.
• Glycolysis is the central pathway for
Glucose catabolism.
Glucose
Extracellular
matrix & cell
wall
polysachharid
e.
Glycogen,
Starch,
Sucrose
Pyruvate
Ribose-5-
phosphate
Oxidation via
pentose
phosphate
pathway
Synthesis of
structural
polymers
storage
Oxidation
via glycolysis
Major pathways
of
glucose
utilization.
TWO PHASES OF GLYCOLYSIS
• Glycolysis leads to breakdown of 6-C
glucose into two molecules of 3-C
pyruvate with the enzyme catalyzed
reaction or categorized into 2 phases:
1. Phase 1- preparatory phase
2. Phase 2- payoff phase.
PREPARATORY PHASE
• It consists of the 1st 5 steps of glycolysis in
which the glucose is enzymatically
phosphorylated by ATP to yield Fructose-1,6-
biphosphate.
• This fructuse-1,6-biphosphate is then split in
half to yield 2 molecules of 3-carbon
containing Glyceraldehyde-3-phosphate/
dihyroxyacteone phosphate.
• Thus the first phase results in cleavage of
the hexose chain.
• This cleavage requires an investment of 2
ATP molecules to activate the glucose
molecule and prepare it for its cleavage
into 3-carbon compound.
PAYOFF PHASE
• This phase constitutes the last 5
reactions of Glycolysis.
• This phase marks the release of ATP
molecules during conversion of
Glyceraldehyde-3-phosphtae to 2 moles of
Pyruvate.
• Here 4 moles of ADP are phosphorylated to
ATP. Although 4 moles of ATP are formed, the
net result is only 2 molecules of ATP per mole
of Glucose oxidized, since 2 moles of ATP are
utilized in Phase 1.
STEPWISE EXPLAINATION OF
GLYCOLYSIS
STEP 1: PHOSPHORYLATION
Glucose
• Glucose is phosphorylated by ATP to form
sugar phosphate.
• This is an irreversible reaction & is catalyzed
by hexokinase.
• Thus the reaction can be represented as
follows:
Glucose-6-phosphate
Hexokinase
ATP
ADP
STEP 2: ISOMERIZATION
• It is a reversible rearrangement of chemical
structure of carbonyl oxygen from C1 to C2,
forming a Ketose from the Aldose.
• Thus, isomerization of the aldose
Glucose6-phosphate gives the ketose,
Fructose-6-phoshphate.
Glucose-6-phosphate
Phosphoglucoisomerase
Fructose-6-phosphate
STEP 3: PHOPHORYLATION
Here the Fructose-6-phosphate is phosphorylated
by ATP to fructose-1,6-bisphosphate.
This is an irreversible reaction and is catalyzed by
phosphofructokinase enzyme.
Fructose-6-phosphate
Fructose-1,6-bisphosphate
ATP
ADP
Phosphofructokinase
STEP 4: BREAKDOWN
• This six carbon sugar is cleaved to produce
two 3-C molecules: glyceradldehyde-3-
phosphate (GAP) & dihydroxyacetone
phosphate(DHAP).
• This reaction is catalyzed by Aldolase.
Glyceraldehyde
-3-
phosphate
Dihydroxyacetone
phosphate
Triose
phosphate
isomerase
Fructose-1,6-
bisphosphate
Aldolase
STEP 5: ISOMERIZATION
• Dihydroxyacetone phosphate is oxidized to form
Glyceraldehyde-3-phosphate.
• This reaction is catalyzed by triose phosphate
isomerase enzyme.
Glyceraldehyde-3-phosphate
Dihydroxyacetone phosphate
Triose
phosphate
isomerase
STEP 6
• 2 molecules of Glyceraldehyde-3-
phosphate are oxidized.
• Glyceraldehyde-3-phosphate
dehydrogenase catalyzes the
conversion of Glyceraldehyde3-
phosphate into 1,3-
bisphosphoglycerate.
Resultant reaction
Glyceraldehyde-3-phosphate
1,3-bisphosphoglycerate
Glyceraldehyde-3-
phosphate
dehydrogenase
2NAD⁺ + 2Pi
2NADH + 2H⁺
STEP 7
• The transfer of high-energy phosphate group
that was generated earlier to ADP, form ATP.
• This phosphorylation i.e. addition of
phosphate to ADP to give ATP is termed as
substrate level phosphorylation as the
phosphate donor is the substrate 1,3-
bisphosphoglycerate (1,3-BPG).
• The product of this reaction is 2 molecules of
3-phosphoglycerate.
1,3-bisphosphoglycerate
3-phosphoglycerate
Phosphoglycerate
kinase 2 ADP
2 ATP
FIRST SUBSTRATE
LEVEL
PHOSPHORYLATION
STEP 8
• The remaining phosphate-ester linkage in 3-
phosphoglycerate, is moved from carbon 3 to
carbon 2 ,because of relatively low free
energy of hydrolysis, to form 2-
phosphoglycerate(2-PG).
3-phosphoglycerate
2-phosphoglycerate
Phosphoglycerate
mutase
STEP 9: DEHYDRATION OF 2-PG
• This is the second reaction in glycolysis
where a high-energy phosphate compound
is formed.
• The 2-phosphoglycerate is dehydrated by the
action of enolase to
phosphoenolpyruvate(PEP).
• This is a reversible reaction.
2-phosphoglycerate
Phosphoenol pyruvate
H₂O
Enolase
STEP 10: TRANSFER OF PHOSPHATE
FROM PEP to pyruvate
• This last step is the irreversible transfer of
high energy phosphoryl group from
phosphoenolpuruvate to pyruvate.
• This reaction is catalyzed by pyruvate
kinase.
• This is the 2nd substrate level
phosphorylation
reaction in glycolysis which yields ATP.
Phosphoenolpyruvate
Pyruvate
Pyruvate
kinase
SECOND
SUBSTRATE LEVEL
PHOSPHORYLATION
2ADP
2ATP
Learning outcomes
 List the enzymes and intermediates
involved in glycolysis
 List the irreversible and regulated
steps of glycolysis
 Discuss regulation of glycolysis
REFERENCES
 https://medicostimes.com/lehninger-
principles-of-biochemistry/
 Lippincott Illustrated Reviews:
Biochemistry (Lippincott Illustrated
Reviews Series) 7th Edition
Lecture 11 (2).pptx

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Lecture 11 (2).pptx

  • 1.
  • 4. Learning objectives  List the enzymes and intermediates involved in glycolysis  List the irreversible and regulated steps of glycolysis  Discuss regulation of glycolysis
  • 5. METABOLIC PATHWAYS CATABOLIC PATHWAYS Are involved in oxidative breakdown of larger complexes. They are usually exergonic in nature ANABOLIC PATHWAYS Are involved in the synthesis of compounds. They are usually endergonic in nature.
  • 6. CHARACTERISTICS OF METABOLISM 1. Metabolic pathways are mostly irreversible 2. Every metabolic pathway has a committed first step. 3. All metabolic pathways are regulated. 4. Metabolic pathways in eukaryotic cells occur in specific cellular locations.
  • 7.
  • 8. GLYCOLYSIS Glycolysis comes from a merge of two Greek words: Glykys = sweet Lysis = breakdown/ splitting It is also known as Embden-Meyerhof-Parnas pathway or EMP pathway.
  • 9. INTRODUCTION • GLYCOLYSIS is the sequence of 10 enzyme- catalyzed reactions that converts glucose into pyruvate with simultaneous production of ATP. • In this oxidative process, 1molecule of glucose is partially oxidised to 2 molecules of pyruvate. • This major pathway of glucose metabolism occurs in the cytosol of all cell. • This unique pathway occurs aerobically as well as anaerobically.
  • 10. • It also includes formation of Lactate from Pyruvate. • The glycolytic sequence of reactions differ from species to species only in the mechanism of its regulation & in the subsequent metabolic fate of the pyruvate formed. • In aerobic organisms, glycolysis is the prelude to Citric acid cycle and ETC. • Glycolysis is the central pathway for Glucose catabolism.
  • 11. Glucose Extracellular matrix & cell wall polysachharid e. Glycogen, Starch, Sucrose Pyruvate Ribose-5- phosphate Oxidation via pentose phosphate pathway Synthesis of structural polymers storage Oxidation via glycolysis Major pathways of glucose utilization.
  • 12. TWO PHASES OF GLYCOLYSIS • Glycolysis leads to breakdown of 6-C glucose into two molecules of 3-C pyruvate with the enzyme catalyzed reaction or categorized into 2 phases: 1. Phase 1- preparatory phase 2. Phase 2- payoff phase.
  • 13.
  • 14. PREPARATORY PHASE • It consists of the 1st 5 steps of glycolysis in which the glucose is enzymatically phosphorylated by ATP to yield Fructose-1,6- biphosphate. • This fructuse-1,6-biphosphate is then split in half to yield 2 molecules of 3-carbon containing Glyceraldehyde-3-phosphate/ dihyroxyacteone phosphate.
  • 15. • Thus the first phase results in cleavage of the hexose chain. • This cleavage requires an investment of 2 ATP molecules to activate the glucose molecule and prepare it for its cleavage into 3-carbon compound.
  • 16.
  • 17. PAYOFF PHASE • This phase constitutes the last 5 reactions of Glycolysis. • This phase marks the release of ATP molecules during conversion of Glyceraldehyde-3-phosphtae to 2 moles of Pyruvate. • Here 4 moles of ADP are phosphorylated to ATP. Although 4 moles of ATP are formed, the net result is only 2 molecules of ATP per mole of Glucose oxidized, since 2 moles of ATP are utilized in Phase 1.
  • 18.
  • 20. STEP 1: PHOSPHORYLATION Glucose • Glucose is phosphorylated by ATP to form sugar phosphate. • This is an irreversible reaction & is catalyzed by hexokinase. • Thus the reaction can be represented as follows: Glucose-6-phosphate Hexokinase ATP ADP
  • 21. STEP 2: ISOMERIZATION • It is a reversible rearrangement of chemical structure of carbonyl oxygen from C1 to C2, forming a Ketose from the Aldose. • Thus, isomerization of the aldose Glucose6-phosphate gives the ketose, Fructose-6-phoshphate. Glucose-6-phosphate Phosphoglucoisomerase Fructose-6-phosphate
  • 22. STEP 3: PHOPHORYLATION Here the Fructose-6-phosphate is phosphorylated by ATP to fructose-1,6-bisphosphate. This is an irreversible reaction and is catalyzed by phosphofructokinase enzyme. Fructose-6-phosphate Fructose-1,6-bisphosphate ATP ADP Phosphofructokinase
  • 23. STEP 4: BREAKDOWN • This six carbon sugar is cleaved to produce two 3-C molecules: glyceradldehyde-3- phosphate (GAP) & dihydroxyacetone phosphate(DHAP). • This reaction is catalyzed by Aldolase. Glyceraldehyde -3- phosphate Dihydroxyacetone phosphate Triose phosphate isomerase Fructose-1,6- bisphosphate Aldolase
  • 24. STEP 5: ISOMERIZATION • Dihydroxyacetone phosphate is oxidized to form Glyceraldehyde-3-phosphate. • This reaction is catalyzed by triose phosphate isomerase enzyme. Glyceraldehyde-3-phosphate Dihydroxyacetone phosphate Triose phosphate isomerase
  • 25. STEP 6 • 2 molecules of Glyceraldehyde-3- phosphate are oxidized. • Glyceraldehyde-3-phosphate dehydrogenase catalyzes the conversion of Glyceraldehyde3- phosphate into 1,3- bisphosphoglycerate.
  • 27. STEP 7 • The transfer of high-energy phosphate group that was generated earlier to ADP, form ATP. • This phosphorylation i.e. addition of phosphate to ADP to give ATP is termed as substrate level phosphorylation as the phosphate donor is the substrate 1,3- bisphosphoglycerate (1,3-BPG). • The product of this reaction is 2 molecules of 3-phosphoglycerate.
  • 29. STEP 8 • The remaining phosphate-ester linkage in 3- phosphoglycerate, is moved from carbon 3 to carbon 2 ,because of relatively low free energy of hydrolysis, to form 2- phosphoglycerate(2-PG). 3-phosphoglycerate 2-phosphoglycerate Phosphoglycerate mutase
  • 30. STEP 9: DEHYDRATION OF 2-PG • This is the second reaction in glycolysis where a high-energy phosphate compound is formed. • The 2-phosphoglycerate is dehydrated by the action of enolase to phosphoenolpyruvate(PEP). • This is a reversible reaction.
  • 32. STEP 10: TRANSFER OF PHOSPHATE FROM PEP to pyruvate • This last step is the irreversible transfer of high energy phosphoryl group from phosphoenolpuruvate to pyruvate. • This reaction is catalyzed by pyruvate kinase. • This is the 2nd substrate level phosphorylation reaction in glycolysis which yields ATP.
  • 34.
  • 35.
  • 36.
  • 37.
  • 38.
  • 39.
  • 40. Learning outcomes  List the enzymes and intermediates involved in glycolysis  List the irreversible and regulated steps of glycolysis  Discuss regulation of glycolysis
  • 41. REFERENCES  https://medicostimes.com/lehninger- principles-of-biochemistry/  Lippincott Illustrated Reviews: Biochemistry (Lippincott Illustrated Reviews Series) 7th Edition

Editor's Notes

  1. In chemistry isomerization is the process in which a molecule, ion or molecular fragment is transformed into an isomer with a different chemical structure.
  2. 1 NADH = 2.5 ATP
  3. Allosteric enzyme, site where the substrate becomes attach.