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BIO2422 Avian biodiversity report
March 13, 2014
Investigating the effects of urbanisation on
avian biodiversity in South West England
Introduction
It istraditionallythoughtamongecologiststhat
urbanisationwillleadtoadecrease inbiodiversity,
due to perturbationssuchashabitatloss,
fragmentation,pollution,invasive speciesand
disruptionof nutrientcycles(Batten1972, Hutto
1988, Pautassoetal 2011, Blair 1996). Here,we
investigateavianspatial andtemporal diversityby
comparingresultsfrom surveystakenatthe Penryn
and Streathamcampusesof the Universityof Exeter in
2013 and 2014.
Methods
Four surveyswere undertakenbetween2013 and
2014 at the PenrynandStreathamcampusesof the
University of Exeter.Small groupsof students took
transectwalksaroundcampus of approximately1
hour andrecordedeachindividual birdtheysaw.Each
grouptook the same route around campusbut were
spacedabout10 minutesapart, andwere therefore
treatedas semi-independentreplicates. The groups
were splitintooddandeven-numberedgroups,which
thenstartedat opposite endsof the transect (see
Figures1 and 2.) Thisprocedure wasrepeatedatboth
campuses,once at Streathamin2013, twice inPenryn
in2013, and once in Penrynin2014. For simplicity,as
the two 2013 Penrynsurveyswere undertakenafew
daysapart, theywill be treatedasone surveyforthe
remainderof thisreportandthe associatedstatistical
analyses.
Simpson’sdiversityindex(Simpson1949) was
calculatedforeachgroup and the mean,standard
deviation,medianandinterquartile range were found
for eachsurvey. These valueswill be usedtocompare
the aviandiversitybetweenthe twocampuses,and
between2013 and 2014.
Results
Figure 3 (below) comparesaviandiversitybetween
2013 and 2014 on the Penryncampus.Aswe can see,
comparingthe meanvaluesandthe overlapin
standarddeviations, aviandiversityappearstodiffer
verylittle fromyeartoyear.
Figure 1: Transect routetaken at Streathamcampus
Figure 2: Transect routetaken at Penryn campus
BIO2422 Avian biodiversity report
March 13, 2014
Figure 4 (above) comparesaviandiversitybetween
the two locations.Inorderto make a fairer
comparison,onlythe surveysfrom2013 were
included. (Asyoucansee fromTable 1, the valuesare
verysimilarandso thisadjustmentmade little
difference tothe final graph.) Aswiththe first
comparison,there islittle significant difference
betweenaviandiversityonthe twocampuses. There
isalso extensive overlapbetweenstandarddeviations
whichisfurtherevidence againstasignificant
difference betweenthe twocampuses. The meanand
medianare alsoverysimilarandthe standard
deviationand interquartile range are quite small
whichsuggeststhatthe data is evenlydistributed
aboutthe mean.
Survey Mean D value Standard
deviation
MedianD value Interquartile
range
Streatham 2013 0.852 0.032 0.855 0.033
Penryn2013 0.861 0.034 0.861 0.062
Penryn2014 0.841 0.053 0.843 0.034
Figure 3: Comparison of
avian diversity between
2013 and 2014. The mean
valuesforD (Simpson’s
diversity index) are plotted in
blue,along with the
standard deviation,while
the median and interquartile
rangeare plotted in red.
Only the surveysfromthe
Penryn campuswereused in
this comparison.
Table 1: The mean, standard deviation, median and interquartile range for the three surveys.
Figure 4: Comparison of
avian diversity between the
two study sites. The mean
valuesforD (Simpson’s
diversity index) are plotted in
blue,along with the
standard deviation,while
the median and interquartile
rangeare plotted in red.
Only the surveysfrom2013
were used in this
comparison.
BIO2422 Avian biodiversity report
March 13, 2014
Discussion
There wasverylittle noticeable change indiversity
between2013 and 2014 on the Penryncampus.As
thisissuch a short time-frame,thisisnotsurprising.
However,the speciescompositionwasnotanalysed,
and so,eventhoughthe diversityindex isthe same,a
differentcommunitycompositionmayexistbetween
years.
Contraryto what we expected, the diversityindices
betweenthe two locations weremarkedlysimilar;but
there maybe manyreasonsforthis. Firstly,there
were manyconfoundingvariablesand issueswiththe
studythat couldhave affectedthe results. One of the
biggestproblemswiththisstudywasthatof
pseudoreplication –we treatedourdata as
independenteventhoughtheywereunlikelytobe. It
ispossible thatdifferentgroups sawthe same birds
and evenwithingroupsthe same birds mayhave
beenrecordedmultiple times(especiallylarge birds
such as seagulls.)Similarly,noteverybirdhadan
equal chance of beingseen andrecorded.Largeror
more conspicuousbirdssuchas gulls,corvidsand
waterfowl were more likelytobe seenthansmaller
passerines.There were alsodifferencesineffortand
accuracy of sampling.Some studentswere betterat
speciesidentificationthanothers,andsome spent
more time accuratelyidentifyingindividual birds,
whereasothersspentmore time sampling. Comparing
the two maps(Figures1 & 2) it alsoappearsthat the
Streathamtransectwas muchlongerthanin Penryn.
Thiscouldalso leadtoan increasedsamplingarea
(andtherefore effort)anddifferencesinthe diversity
of habitatssampled. There wasalsolittle information
on the time of day, season,andweatherconditionsof
each surveyandso itis possible thatthese were also
confoundingvariablesthatwere notadequately
analysed.Anotherpossible factoristhe locationof
the two studysites;ExeterandPenrynmaynaturally
differinaviandiversity.However,aswe cansee in
Figure 5, the two areashave similar,lowlevelsof
speciesrichness(here usedasasurrogate for
diversity.)
Anothermain issue withthe studyisthe basic
assumptionthatStreathamcampusisan ‘urban’
environmentandthatPenrynis‘rural’.Infact,
Streathamcampusis situatedjustoutside of the main
city,Exeter,andisrenownedforitsgardensand
grounds. It isa registeredbotanical garden,containsa
varietyof differenthabitats(ExeterUniversity(a))and
isactivelymanagedtoencourage andmaintain
biodiversity (ExeterUniversity(b)).Therefore,itis
relativelyunrepresentative of anEnglishurban
environment.Penryncampusisalsonotentirelyrural;
the Universityitself isbuiltonthe campusandthe
groundsare alsoactivelymanagedandplantedwith
manyexoticspeciessuchasrhododendronsthatdo
not accuratelyrepresentarural Englishhabitat.
Streathamcampusalsoboasts a large varietyof exotic
plants;andthese affectbiodiversity. Millsetal found
that the densityof native birdspeciesandnative
vegetationwere positivelycorrelated,andexoticbird
densitieswere correlatedwiththatof exoticplants
(Millsetal,1989, as citedbyBlair 1996). Therefore,it
ispossible thatthe highabundance of non-native
speciesof plantsonbothcampusesaffectedthe
compositionof species,butnotnecessarilythe
diversity.A furtherstudywouldbe requiredanalysing
the compositionof birdspeciesonboth sitestosee if
thisistrue. Bothcampusescouldperhapsmore
accuratelybe describedas‘suburban’or‘urbanized.’
Figure 5: Species
richnessof birdsin
Britain (where
darkershades
indicate higher
richness – Williams
et al 1996)
BIO2422 Avian biodiversity report
March 13, 2014
If this isthe case; the levelsof highbiodiversityfound
at both campusesmaybe betterexplained.
High levels of avian diversity in a
suburban environment
Thoughthe original thinkingwasthaturbanisation
wouldhave negative effectsonbiodiversity, more
recentstudieshave foundthatintermediatelevelsof
urbanisationcanactuallyhave positiveeffectson
speciesdiversity,richness&abundance (Blair1996,
Bock etal 2008, Pautassoetal 2011). For example,
Bock etal (2008) foundthat inopen,arid
environments suburbandevelopmentscanact as an
‘oasis’forbirdlife,providingwater,foodandnesting
sitesinan otherwise barrenenvironment.Itisunlikely
that birdsinBritainwouldsufferfromalack of water,
howeverthe provisionof resourcesinthe formof bird
feedersandnestboxesinsuburbangardensare likely
to benefitbirds. The general increaseinenergy
availabilityandheterogeneityinurbanisedhabitats
may alsoallowthe co-existenceof more species
(Pautassoetal 2011). Blairalsonotesthat just
because there isa highabundance of a certainspecies
at a site doesnot necessarilymeanthatitisa self-
sustainingpopulation,anditispossible thatthismay
be the case witheitherof ourstudysites(Blair1996).
He alsosuggeststhe ideathata moderate level of
disturbance (suchasthose seeninmanagedsuburban
areas suchas our studysites) canincrease species
diversitybyrestrictingthe populationsize of the
dominantspeciesandallowingthe rarer,less
competitivespeciestoco-exist(Blair1996).
Recommendations for amendments and
future studies
Pseudoreplicationhasbeenhighlightedhere asone of
the maindownfallsof thisstudy.Toreduce or avoid
thisproblem,one couldmake several different
amendmentstothe study.If the groupshad stayedat
individualsitesandsampled,insteadof all groups
samplingalongthe whole transectsimultaneously,
thiswouldreduce the likelihoodof twogroupsseeing
the same birds(as well asreducingthe disturbance to
the birds.) However,withthismethodthe problemof
differencesinsamplingeffortandabilitywouldstill
persistsoperhapsa studydesigninwhichone ortwo
‘experts’samplingwouldproduce more reliableand
accurate data. Anyfuture studywouldalsohave to
ensure thatthe area or transect lengthsampledwas
equal onboth sites,thatthe time of day andyear
were the same,andthat the sitesmore suitablyfitted
the categoriesof ‘rural’and‘urban.’
A wayto achieve this,andto reduce the confounding
variablesbetweensitessuchasclimate wouldbe to
analyse differentlevelsof urbanisationinthe same
area,eitherona temporal (before andafter
urbanisation) orspatial scale(gradientanalysisasused
inBlair,1996). This has the addedbenefitof aneasier
comparisonbetweenstudysites.
More objective meansof samplingwouldalsobe
beneficial byincreasingaccuracyand reducingbias.
Thiscouldbe achievedbymethodssuchasthe use of
camera traps,mist-nettingornest-box analysis.
However,these methodshave the limitationof only
beingapplicabletocertaingroupsor speciesof birds
(e.g.passerines.) Although,thesecould perhapsbe
usedas a surrogate for total birddiversity. A more
objective wayof defining‘rural’and‘urban’
environmentsshouldalsobe used,suchasmeasuring
concrete coveror vegetation.These measureswould
alsomake the study mucheasiertoreplicate (Blair,
1996).
A future studymayalsoconsidermeasuringsome
otherinterestingvariables,suchasthe levelsof
speciesrarity,endemismorinvasiveness withinand
betweenstudysitesasthese cancontribute towardsa
site’sconservationvalue.A broaderanalysisof
populationswouldalsobe useful tosee if theyare
self-sustainingandif thisdiffersbetweensites andif
the productivity(e.g. reproductive rates) differ(Blair
1996).
References
Batten,L. A. (1972). Breedingbirdspeciesdiversityin
relationtoincreasingurbanisation. Bird Study,19(3),
157-166.
Blair,R. B. (1996). Landuse andavianspeciesdiversity
alongan urban gradient. Ecologicalapplications,6(2),
506-519.
BIO2422 Avian biodiversity report
March 13, 2014
Bock, C.E., Jones,Z.F., & Bock, J.H. (2008). The oasis
effect:response of birdstoexurbandevelopmentina
southwesternsavanna. EcologicalApplications,18(5),
1093-1106.
ExeterUniversity(a) “StreathamCampus”[Online]
Available:
http://www.exeter.ac.uk/visit/campuses/streatham/
(11/03/2014)
ExeterUniversity(b) “Biodiversity”[Online] Available:
http://www.exeter.ac.uk/visit/campuses/gardens/bio
diversity/#d.en.136587 (11/03/2014)
Hutto,R. L. (1988). Is tropical deforestation
responsible forthe reporteddeclinesinneotropical
migrantpopulations. American Birds,42(3),375-379.
Pautasso,M., Böhning‐Gaese,K.,Clergeau,P.,Cueto,
V.R., Dinetti,M.,Fernández‐Juricic,E., Kaisanlahti‐
Jokimäki,M.L. & Cantarello,E.(2011). Global
macroecologyof birdassemblagesinurbanizedand
semi‐natural ecosystems. GlobalEcology and
Biogeography,20(3),426-436.
Simpson,E.H. (1949). Measurementof diversity.
Nature.
Williams,P.,Gibbons,D.,Margules,C.,Rebelo,A.,
Humphries,C.,&Pressey,R.(1996). A comparisonof
richnesshotspots,rarityhotspots,and
complementaryareasforconservingdiversityof
Britishbirds. ConservationBiology,10(1),155-174.

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Bird report

  • 1. BIO2422 Avian biodiversity report March 13, 2014 Investigating the effects of urbanisation on avian biodiversity in South West England Introduction It istraditionallythoughtamongecologiststhat urbanisationwillleadtoadecrease inbiodiversity, due to perturbationssuchashabitatloss, fragmentation,pollution,invasive speciesand disruptionof nutrientcycles(Batten1972, Hutto 1988, Pautassoetal 2011, Blair 1996). Here,we investigateavianspatial andtemporal diversityby comparingresultsfrom surveystakenatthe Penryn and Streathamcampusesof the Universityof Exeter in 2013 and 2014. Methods Four surveyswere undertakenbetween2013 and 2014 at the PenrynandStreathamcampusesof the University of Exeter.Small groupsof students took transectwalksaroundcampus of approximately1 hour andrecordedeachindividual birdtheysaw.Each grouptook the same route around campusbut were spacedabout10 minutesapart, andwere therefore treatedas semi-independentreplicates. The groups were splitintooddandeven-numberedgroups,which thenstartedat opposite endsof the transect (see Figures1 and 2.) Thisprocedure wasrepeatedatboth campuses,once at Streathamin2013, twice inPenryn in2013, and once in Penrynin2014. For simplicity,as the two 2013 Penrynsurveyswere undertakenafew daysapart, theywill be treatedasone surveyforthe remainderof thisreportandthe associatedstatistical analyses. Simpson’sdiversityindex(Simpson1949) was calculatedforeachgroup and the mean,standard deviation,medianandinterquartile range were found for eachsurvey. These valueswill be usedtocompare the aviandiversitybetweenthe twocampuses,and between2013 and 2014. Results Figure 3 (below) comparesaviandiversitybetween 2013 and 2014 on the Penryncampus.Aswe can see, comparingthe meanvaluesandthe overlapin standarddeviations, aviandiversityappearstodiffer verylittle fromyeartoyear. Figure 1: Transect routetaken at Streathamcampus Figure 2: Transect routetaken at Penryn campus
  • 2. BIO2422 Avian biodiversity report March 13, 2014 Figure 4 (above) comparesaviandiversitybetween the two locations.Inorderto make a fairer comparison,onlythe surveysfrom2013 were included. (Asyoucansee fromTable 1, the valuesare verysimilarandso thisadjustmentmade little difference tothe final graph.) Aswiththe first comparison,there islittle significant difference betweenaviandiversityonthe twocampuses. There isalso extensive overlapbetweenstandarddeviations whichisfurtherevidence againstasignificant difference betweenthe twocampuses. The meanand medianare alsoverysimilarandthe standard deviationand interquartile range are quite small whichsuggeststhatthe data is evenlydistributed aboutthe mean. Survey Mean D value Standard deviation MedianD value Interquartile range Streatham 2013 0.852 0.032 0.855 0.033 Penryn2013 0.861 0.034 0.861 0.062 Penryn2014 0.841 0.053 0.843 0.034 Figure 3: Comparison of avian diversity between 2013 and 2014. The mean valuesforD (Simpson’s diversity index) are plotted in blue,along with the standard deviation,while the median and interquartile rangeare plotted in red. Only the surveysfromthe Penryn campuswereused in this comparison. Table 1: The mean, standard deviation, median and interquartile range for the three surveys. Figure 4: Comparison of avian diversity between the two study sites. The mean valuesforD (Simpson’s diversity index) are plotted in blue,along with the standard deviation,while the median and interquartile rangeare plotted in red. Only the surveysfrom2013 were used in this comparison.
  • 3. BIO2422 Avian biodiversity report March 13, 2014 Discussion There wasverylittle noticeable change indiversity between2013 and 2014 on the Penryncampus.As thisissuch a short time-frame,thisisnotsurprising. However,the speciescompositionwasnotanalysed, and so,eventhoughthe diversityindex isthe same,a differentcommunitycompositionmayexistbetween years. Contraryto what we expected, the diversityindices betweenthe two locations weremarkedlysimilar;but there maybe manyreasonsforthis. Firstly,there were manyconfoundingvariablesand issueswiththe studythat couldhave affectedthe results. One of the biggestproblemswiththisstudywasthatof pseudoreplication –we treatedourdata as independenteventhoughtheywereunlikelytobe. It ispossible thatdifferentgroups sawthe same birds and evenwithingroupsthe same birds mayhave beenrecordedmultiple times(especiallylarge birds such as seagulls.)Similarly,noteverybirdhadan equal chance of beingseen andrecorded.Largeror more conspicuousbirdssuchas gulls,corvidsand waterfowl were more likelytobe seenthansmaller passerines.There were alsodifferencesineffortand accuracy of sampling.Some studentswere betterat speciesidentificationthanothers,andsome spent more time accuratelyidentifyingindividual birds, whereasothersspentmore time sampling. Comparing the two maps(Figures1 & 2) it alsoappearsthat the Streathamtransectwas muchlongerthanin Penryn. Thiscouldalso leadtoan increasedsamplingarea (andtherefore effort)anddifferencesinthe diversity of habitatssampled. There wasalsolittle information on the time of day, season,andweatherconditionsof each surveyandso itis possible thatthese were also confoundingvariablesthatwere notadequately analysed.Anotherpossible factoristhe locationof the two studysites;ExeterandPenrynmaynaturally differinaviandiversity.However,aswe cansee in Figure 5, the two areashave similar,lowlevelsof speciesrichness(here usedasasurrogate for diversity.) Anothermain issue withthe studyisthe basic assumptionthatStreathamcampusisan ‘urban’ environmentandthatPenrynis‘rural’.Infact, Streathamcampusis situatedjustoutside of the main city,Exeter,andisrenownedforitsgardensand grounds. It isa registeredbotanical garden,containsa varietyof differenthabitats(ExeterUniversity(a))and isactivelymanagedtoencourage andmaintain biodiversity (ExeterUniversity(b)).Therefore,itis relativelyunrepresentative of anEnglishurban environment.Penryncampusisalsonotentirelyrural; the Universityitself isbuiltonthe campusandthe groundsare alsoactivelymanagedandplantedwith manyexoticspeciessuchasrhododendronsthatdo not accuratelyrepresentarural Englishhabitat. Streathamcampusalsoboasts a large varietyof exotic plants;andthese affectbiodiversity. Millsetal found that the densityof native birdspeciesandnative vegetationwere positivelycorrelated,andexoticbird densitieswere correlatedwiththatof exoticplants (Millsetal,1989, as citedbyBlair 1996). Therefore,it ispossible thatthe highabundance of non-native speciesof plantsonbothcampusesaffectedthe compositionof species,butnotnecessarilythe diversity.A furtherstudywouldbe requiredanalysing the compositionof birdspeciesonboth sitestosee if thisistrue. Bothcampusescouldperhapsmore accuratelybe describedas‘suburban’or‘urbanized.’ Figure 5: Species richnessof birdsin Britain (where darkershades indicate higher richness – Williams et al 1996)
  • 4. BIO2422 Avian biodiversity report March 13, 2014 If this isthe case; the levelsof highbiodiversityfound at both campusesmaybe betterexplained. High levels of avian diversity in a suburban environment Thoughthe original thinkingwasthaturbanisation wouldhave negative effectsonbiodiversity, more recentstudieshave foundthatintermediatelevelsof urbanisationcanactuallyhave positiveeffectson speciesdiversity,richness&abundance (Blair1996, Bock etal 2008, Pautassoetal 2011). For example, Bock etal (2008) foundthat inopen,arid environments suburbandevelopmentscanact as an ‘oasis’forbirdlife,providingwater,foodandnesting sitesinan otherwise barrenenvironment.Itisunlikely that birdsinBritainwouldsufferfromalack of water, howeverthe provisionof resourcesinthe formof bird feedersandnestboxesinsuburbangardensare likely to benefitbirds. The general increaseinenergy availabilityandheterogeneityinurbanisedhabitats may alsoallowthe co-existenceof more species (Pautassoetal 2011). Blairalsonotesthat just because there isa highabundance of a certainspecies at a site doesnot necessarilymeanthatitisa self- sustainingpopulation,anditispossible thatthismay be the case witheitherof ourstudysites(Blair1996). He alsosuggeststhe ideathata moderate level of disturbance (suchasthose seeninmanagedsuburban areas suchas our studysites) canincrease species diversitybyrestrictingthe populationsize of the dominantspeciesandallowingthe rarer,less competitivespeciestoco-exist(Blair1996). Recommendations for amendments and future studies Pseudoreplicationhasbeenhighlightedhere asone of the maindownfallsof thisstudy.Toreduce or avoid thisproblem,one couldmake several different amendmentstothe study.If the groupshad stayedat individualsitesandsampled,insteadof all groups samplingalongthe whole transectsimultaneously, thiswouldreduce the likelihoodof twogroupsseeing the same birds(as well asreducingthe disturbance to the birds.) However,withthismethodthe problemof differencesinsamplingeffortandabilitywouldstill persistsoperhapsa studydesigninwhichone ortwo ‘experts’samplingwouldproduce more reliableand accurate data. Anyfuture studywouldalsohave to ensure thatthe area or transect lengthsampledwas equal onboth sites,thatthe time of day andyear were the same,andthat the sitesmore suitablyfitted the categoriesof ‘rural’and‘urban.’ A wayto achieve this,andto reduce the confounding variablesbetweensitessuchasclimate wouldbe to analyse differentlevelsof urbanisationinthe same area,eitherona temporal (before andafter urbanisation) orspatial scale(gradientanalysisasused inBlair,1996). This has the addedbenefitof aneasier comparisonbetweenstudysites. More objective meansof samplingwouldalsobe beneficial byincreasingaccuracyand reducingbias. Thiscouldbe achievedbymethodssuchasthe use of camera traps,mist-nettingornest-box analysis. However,these methodshave the limitationof only beingapplicabletocertaingroupsor speciesof birds (e.g.passerines.) Although,thesecould perhapsbe usedas a surrogate for total birddiversity. A more objective wayof defining‘rural’and‘urban’ environmentsshouldalsobe used,suchasmeasuring concrete coveror vegetation.These measureswould alsomake the study mucheasiertoreplicate (Blair, 1996). A future studymayalsoconsidermeasuringsome otherinterestingvariables,suchasthe levelsof speciesrarity,endemismorinvasiveness withinand betweenstudysitesasthese cancontribute towardsa site’sconservationvalue.A broaderanalysisof populationswouldalsobe useful tosee if theyare self-sustainingandif thisdiffersbetweensites andif the productivity(e.g. reproductive rates) differ(Blair 1996). References Batten,L. A. (1972). Breedingbirdspeciesdiversityin relationtoincreasingurbanisation. Bird Study,19(3), 157-166. Blair,R. B. (1996). Landuse andavianspeciesdiversity alongan urban gradient. Ecologicalapplications,6(2), 506-519.
  • 5. BIO2422 Avian biodiversity report March 13, 2014 Bock, C.E., Jones,Z.F., & Bock, J.H. (2008). The oasis effect:response of birdstoexurbandevelopmentina southwesternsavanna. EcologicalApplications,18(5), 1093-1106. ExeterUniversity(a) “StreathamCampus”[Online] Available: http://www.exeter.ac.uk/visit/campuses/streatham/ (11/03/2014) ExeterUniversity(b) “Biodiversity”[Online] Available: http://www.exeter.ac.uk/visit/campuses/gardens/bio diversity/#d.en.136587 (11/03/2014) Hutto,R. L. (1988). Is tropical deforestation responsible forthe reporteddeclinesinneotropical migrantpopulations. American Birds,42(3),375-379. Pautasso,M., Böhning‐Gaese,K.,Clergeau,P.,Cueto, V.R., Dinetti,M.,Fernández‐Juricic,E., Kaisanlahti‐ Jokimäki,M.L. & Cantarello,E.(2011). Global macroecologyof birdassemblagesinurbanizedand semi‐natural ecosystems. GlobalEcology and Biogeography,20(3),426-436. Simpson,E.H. (1949). Measurementof diversity. Nature. Williams,P.,Gibbons,D.,Margules,C.,Rebelo,A., Humphries,C.,&Pressey,R.(1996). A comparisonof richnesshotspots,rarityhotspots,and complementaryareasforconservingdiversityof Britishbirds. ConservationBiology,10(1),155-174.