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Mike Dietze PEcAn
1.
The PEcAn Project: Accessible
ecoinformatic tools for carbon-cycle model-data analysis and assimilation
2.
Friedlingstein et al
2006
3.
Terrestrial Biosphere Models ● Biogeochemistry ● Ecophysiology ●
Land Surface ● Vegetation Community Dietze and Latimer (2012) Forest Simulators. In Encyclopedia of Theoretical Ecology. University of California Press.
4.
5.
Challenges ● Explosion in
data volume and diversity ● No one data source provides a complete picture of the terrestrial biosphere ● Limited by ability to use data – Informatics – Model-Data Fusion – Uncertainty – Accessibility
6.
Accessibility
7.
Ecosystem Model IN OUT DATA Standard Model Specific Standard Viz Analysis Analysis Model Parameters DATABASE PEcAn
8.
Backend ● PostGRE SQL
Database – Data, Inputs, Runs, Provenance ● Modules (mostly R) – Model analysis, Data analysis, Data Assimilation, conversions / informatics, model interfaces, visualization ● Accessibility – Released as VM – Web: Database, Model execution / history, Vis, RStudio Server – Remote / HPC execution
9.
Global Site level Trait Meta-analysis m Yi qi so,i ft PRIOR
PRIOR PRIOR Prior Parameter Data Obs. mean Obs. var Site mean Global mean Across-site var Within-site var Hierarchical mean, common variance
10.
Ensemble Estimate
11.
Sensitivity Analysis Prior Posterior NPP(Mg/ha)
12.
Variance Decomposition *can easily
be extended to driver and IC uncertainties * Prior Posterior
13.
Parameter Data Assimilation Generalized
Priors (weak) Prior Meta-analysis Posterior Posterior Traits Eddy Flux Prior Posterior Forest Inventory Prior Posterior Prior Posterior Prior Posterior Hydrology Experiments Remote Sensing
14.
State-Variable Data Assimilation P∣y∝P
y∣P Updated State Data Model
15.
16.
Testbed: ChEAS (Chequamegon-Ecosystem Atmosphere
Study) Goal: Reconcile carbon-cycle information from multiple data streams
17.
18.
NSF ABI #1062547 http://pecanproject.org https://github.com/PecanProject
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