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What is Prenatal diagnosis ?
It is the method used to detect
diseases/conditions in a fetus or embryo before
birth.
 Maternal age > 35 years at EDC

 Abnormal maternal serum screening for:

1. DS cut off > 1/270
2. Increased risk Trisomy 18 or 13
3. Other genetic abnormalities

 Previous child with chromosomal abnormality or diagnosable
  genetic disorder

 Balanced translocation carrier

 Ultrasound anomaly (soft sign vs frank anomaly)
Baseline Risk for Having a Child With a
         Serious Birth Defect



            3-5%
Maternal   DS Risk   All Chrom Abn     DS risk
  Age       Birth         Birth      Midtrimester


  20                                   1/1231
  30        1/185       1/384           1/685
  33       1/592        1/285           1/452
  34       1/465        1/243           1/352
  35       1/385        1/178           1/274
  36       1/287         1/149          1/213
  37       1/225         1/123          1/166
  38        1/177        1/105          1/129
  39        1/139        1/80           1/100
  40        1/109        1/63           1/80
   41       1/85         1/48            1/61
Non-
disjunction              Normal
                         Sex cell
                         production




              Monosomy
~70%   T21 due to an error in maternal meiosis I

~   20% maternal meiosis II

~   5% occur during spermatogenesis (meiosis II)

5% of trisomic 21 error in mitosis- no advanced maternal age and
there is no preference for which chromosome 21 is duplicated in
the mitotic error

most   common chromosomal abnormalities in live born children
~1/700
Moderate     mental retardation

   Facial Characteristics
      upslanting palpebral fissures
      epicanthic folds,
      midface hypoplasia,
      macroglossia

Congenital   malformations

      heart (30-40%), atrioventricular canal
      gastrointestinal tract, such as duodenal stenosis or atresia,
      imperforate anus, and Hirschsprung disease
      Leukemia (both ALL and AML) 10-20x
      acute megakaryocytic leukemia occurs 200 to 400 times more
      frequently in the Down syndrome
      90% have significant hearing loss, usually of the conductive
      type
Trisomy 18, Edward syndrome

          1/8000
Facial                                                           Central Nervous System
•microcephaly with prominent occiput                             severe mental retardation
•narrow bifrontal diameter                                       hypotonia -> hypertonia
•short palpabral fissures                                        neural tube defects
•low-set malformed ears                                          poor suck and weak cry
•cleft lip +/- palate                                            failure to thrive
•narrow palatal arch                                             ocular anomalies
•micrognathia                                                    Respiratory
Skeletal                                                         •apnea
•neck                                                            Cardiovascular( >95%)
•webbed                                                          •major: VSD, ASD, PDA
•chest                                                           •minor: transposition, ToF, coarctation, anomalous
•short sternum                                                   coronary artery, dextrocardia,
•widely spaced nipples                                           •aberrant subclavian artery, arteriosclerosis, PS,
•hips:                                                           bicuspid aortic and/or pulmonic valves
•small pelvis, congenital dislocation of the hips, limited hip   Gastrointestinal
abduction                                                        •inguinal, umbilical, and/or
•extremities:                                                    diaphragmatic hernia
•phocomelia                                                      •congenital defects:
•rockerbottom feet or equinovarus                                •diastasis recti, heterotopic pancreas, malrotation,
short dorsiflexed big toes                                       Meckel's, tracheoesophageal fistula
fixed flexion deformity of the fingers (overlapping of the       Genitourinary
2nd and 5th fingers over the 3rd and 4th fingers)                •cryptorchidism
simple arch pattern of the fingers and toes                      •congenital defects:
hypoplasia of fingernails                                        double ureter, ectopic kidney,
single crease of 5th finger or all fingers (absence of           horseshoe kidney, hydronephrosis,
interphalangeal flexion creases)                                 polycystic kidney
simian crease
•severe mental retardation
•coloboma,
•(a cleft palate) and/or a cleft lip
•hypotonia
•skeletal abnormalities (polydactyly)
•Renal
heart defects
•holoprocencephaly
                                        1/5,000
Second    most common major congenital defect (1-2/1000)

Not   a chromosome anomaly

Routinely   tested and screened for in pregnancy

Failure   neural tube to close at 28 days gestation

20%   are closed lesions and difficult to detect prenatally
Marker      Down Syndrome   Edward           Patau Syndrome
            (T21)           Syndrome (T18)   (T13)


AFP         Lower- 25%      Lower- 35-55%    Slightly raised

uE3         Lower- 30%      Lower- 35-55%    Lower- 30%

Free HCGβ   Raised - 2X     Lower- 50%       Lower- 50%

PAPP-A      Lower- 50%      Lower- 50%       Lower -50%

Inhibin-A   Raised – 2X     No value         Raised - 2X
Test                   When                    What                    Performance*      Diagnostic test

                                                                         T21 30-40%        1.CVS or amniocentesis
  Maternal Age           > 35 y.o.               Age alone               T18 30-40%        2. higher miscarriage
                                                                                           rate with T18
                                                                         NTD no relation

  Ultrasound             10-12                   Age + NT                T21 75-80%        CVS or
                                                                                           amniocentesis
                                                                         T21    60%        Amniocentesis
  Ultrasound             18-20                   Age +                   T18    85%
                                                 sonogram                NTD   70-98%
                                                 E3                      T21    60-70%     Amniocentesis
  Triple Screen          16-20 (15-              msAFP                   T18    60%
                         21)                     BHCG                    NTD   75-80%
                                                 E3                      T21    75-80%     Amniocentesis
  Quad Screen            16-20 (15-              msAFP                   T18    60%
                                                 BHCG
                         21)                                             NTD   75-80%
                                                 Inhibin-A
  FTS: First                                     PAPP-A                  T21 83-90%        1.CVS or amniocentesis
  Trimester              11-12 (10-              Free BHCG               T18 80%           2.Need msAFP
  Screen,                                                                                  3. detection of
                         14)                     NT                      NTD -----
                                                                                           miscarriages
  Ultrascreen
  Integrated             10-14                   PAPP-A                  T21 92%           Amniocentesis
  Screen                 16-20 (15-              NT                      T18 90%
                                                 Quad Screen
                         21)                                             NTD 80%
First trimester serum, stepwise sequential screen, contingency sequential screen                         *SPR 5%
Fetal Anomaly             Detection Rate

NTD- AFP alone            75-80%

Trisomy 21- Triple test   70%- Down syndrome

Trisomy 18- Triple test   80%- Edward’s syndrome




                                   *SP = screen positive rate 5%
 AMNIOCENTESIS

 CHORIONIC VILLUS SAMPLING

 PERCUTANEOUS UMBILICAL CORD SAMPLING
PERFORMED ROUTINELY 16-20 WEEKS
Chromosome   analysis
AF-AFP levels
                          ONTD
Acetylcholinesterase

Risk of miscarriage associated with procedure 1/100-1/400


           Advantage                     Disadvantage
                                Late in gestation
Highly reliable results 99+%
Familiar
                                     oDecision making
Long standing reputation
                                     oPrivacy
                                     oMom feels movement
NTD detection
                                Fear of needles

                                Needle invades the sac
Performed
>10 wks-13 weeks


Chromosome analysis

Risk 1/100-1/200
Disadvantage

Higher  loss rate
Less access to procedure
Higher chance of insufficient sample
Early test=risk of sampling a fetus potentially
destined to miscarry
No ONTD testing
More risk of vaginal bleeding/infection.
Disadvantage

~2% risk of loss
Technically difficult prior to 20 weeks
     Advantages
Blood  disorders such as hemophilia and anemia
Useful for detection of Rh isoimmunization of the fetus (blood cell
count and oxygen level)→erythroblastosis fetalis (HDN)
 Fetal karyotype is available in 48 hours to study Chromosomal
abnormalities
Infections such as toxoplasmosis and rubella.

The procedure is also used to perform blood transfusions to the
fetus and to administer medication directly into the fetal blood
supply.
RISK         Procedure
Fetal Aneuploidy    Related
                     RISK
Non-invasive prenatal screening will be based on blood
collection from pregnant women and investigation of the
fetal DNA present in maternal circulation



        Advantage
   Do not put the fetus at risk for spontaneous abortion
   Can be offered to all pregnancies
   Provide a more effective prevention
   Done at early pregnancy
   High accuracy
What is already Known

    Non-invasive prenatal detection of fetal trisomy 21 is achievable by
    Next Generation Sequencing (NGS) of maternal plasma DNA


What are the Benefits of NGS

   Among high risk pregnancies clinically indicated for invasive prenatal
    diagnosis, noninvasive Detection of fetal trisomy 21 can be achieved
    with the use of multiplexed massively Parallel sequencing of maternal
    plasma DNA with 100%sensitivity and 99.9% specificity,
   Giving a 99% positive predictive value and 100% negative predictive
    value
   The sequencing test could be used to rule out trisomy 21 among high
    risk pregnancies before proceeding to invasive diagnostic testing .This
    will reduce the number of cases requiring Amniocentesis or chorionic
    villus sampling
   Multiplexed maternal plasma sequencing / Next Generation
    Sequencing has overcome the difficulty that poses the small
    proportion of fetal DNA in maternal circulation

   Large-scale validity study used multiplexed maternal plasma DNA
    sequencing analysis in pregnant women at high risk for fetal
    trisomy 21 to compare the conventional screening who underwent
    invasive procedures for full karyotyping

   Research suggested that the invasive diagnostic procedures could
    be avoided in about 98% of the cases in a high-risk population

   It is cost-effective and NOW easily obtained from diagnostic
    laboratories
 Those whose age is 35 or above and do not choose to receive invasive prenatal
tests

 Those whose serum biochemical tests and ultrasound examinations suggest
high risk of chromosome aneuploidies at the first and second trimester

 Those that wish to have non-invasive fetal aneuploidies test for trisomy21, 18
and 13

 Those that received IVF, or previously suffered from habitual abortion

 Those that have contraindication of invasive prenatal testing, such as placenta
previa, risk of miscarriage or infections (HIV, HBV etc)
Thank you

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Earlier, accurate & non invasive the new trigene test in the clinical context

  • 1.
  • 2. What is Prenatal diagnosis ? It is the method used to detect diseases/conditions in a fetus or embryo before birth.
  • 3.  Maternal age > 35 years at EDC  Abnormal maternal serum screening for: 1. DS cut off > 1/270 2. Increased risk Trisomy 18 or 13 3. Other genetic abnormalities  Previous child with chromosomal abnormality or diagnosable genetic disorder  Balanced translocation carrier  Ultrasound anomaly (soft sign vs frank anomaly)
  • 4. Baseline Risk for Having a Child With a Serious Birth Defect 3-5%
  • 5.
  • 6. Maternal DS Risk All Chrom Abn DS risk Age Birth Birth Midtrimester 20 1/1231 30 1/185 1/384 1/685 33 1/592 1/285 1/452 34 1/465 1/243 1/352 35 1/385 1/178 1/274 36 1/287 1/149 1/213 37 1/225 1/123 1/166 38 1/177 1/105 1/129 39 1/139 1/80 1/100 40 1/109 1/63 1/80 41 1/85 1/48 1/61
  • 7.
  • 8.
  • 9. Non- disjunction Normal Sex cell production Monosomy
  • 10. ~70% T21 due to an error in maternal meiosis I ~ 20% maternal meiosis II ~ 5% occur during spermatogenesis (meiosis II) 5% of trisomic 21 error in mitosis- no advanced maternal age and there is no preference for which chromosome 21 is duplicated in the mitotic error most common chromosomal abnormalities in live born children
  • 12. Moderate mental retardation  Facial Characteristics upslanting palpebral fissures epicanthic folds, midface hypoplasia, macroglossia Congenital malformations heart (30-40%), atrioventricular canal gastrointestinal tract, such as duodenal stenosis or atresia, imperforate anus, and Hirschsprung disease Leukemia (both ALL and AML) 10-20x acute megakaryocytic leukemia occurs 200 to 400 times more frequently in the Down syndrome 90% have significant hearing loss, usually of the conductive type
  • 13. Trisomy 18, Edward syndrome 1/8000
  • 14. Facial Central Nervous System •microcephaly with prominent occiput severe mental retardation •narrow bifrontal diameter hypotonia -> hypertonia •short palpabral fissures neural tube defects •low-set malformed ears poor suck and weak cry •cleft lip +/- palate failure to thrive •narrow palatal arch ocular anomalies •micrognathia Respiratory Skeletal •apnea •neck Cardiovascular( >95%) •webbed •major: VSD, ASD, PDA •chest •minor: transposition, ToF, coarctation, anomalous •short sternum coronary artery, dextrocardia, •widely spaced nipples •aberrant subclavian artery, arteriosclerosis, PS, •hips: bicuspid aortic and/or pulmonic valves •small pelvis, congenital dislocation of the hips, limited hip Gastrointestinal abduction •inguinal, umbilical, and/or •extremities: diaphragmatic hernia •phocomelia •congenital defects: •rockerbottom feet or equinovarus •diastasis recti, heterotopic pancreas, malrotation, short dorsiflexed big toes Meckel's, tracheoesophageal fistula fixed flexion deformity of the fingers (overlapping of the Genitourinary 2nd and 5th fingers over the 3rd and 4th fingers) •cryptorchidism simple arch pattern of the fingers and toes •congenital defects: hypoplasia of fingernails double ureter, ectopic kidney, single crease of 5th finger or all fingers (absence of horseshoe kidney, hydronephrosis, interphalangeal flexion creases) polycystic kidney simian crease
  • 15. •severe mental retardation •coloboma, •(a cleft palate) and/or a cleft lip •hypotonia •skeletal abnormalities (polydactyly) •Renal heart defects •holoprocencephaly 1/5,000
  • 16. Second most common major congenital defect (1-2/1000) Not a chromosome anomaly Routinely tested and screened for in pregnancy Failure neural tube to close at 28 days gestation 20% are closed lesions and difficult to detect prenatally
  • 17.
  • 18. Marker Down Syndrome Edward Patau Syndrome (T21) Syndrome (T18) (T13) AFP Lower- 25% Lower- 35-55% Slightly raised uE3 Lower- 30% Lower- 35-55% Lower- 30% Free HCGβ Raised - 2X Lower- 50% Lower- 50% PAPP-A Lower- 50% Lower- 50% Lower -50% Inhibin-A Raised – 2X No value Raised - 2X
  • 19.
  • 20. Test When What Performance* Diagnostic test T21 30-40% 1.CVS or amniocentesis Maternal Age > 35 y.o. Age alone T18 30-40% 2. higher miscarriage rate with T18 NTD no relation Ultrasound 10-12 Age + NT T21 75-80% CVS or amniocentesis T21 60% Amniocentesis Ultrasound 18-20 Age + T18 85% sonogram NTD 70-98% E3 T21 60-70% Amniocentesis Triple Screen 16-20 (15- msAFP T18 60% 21) BHCG NTD 75-80% E3 T21 75-80% Amniocentesis Quad Screen 16-20 (15- msAFP T18 60% BHCG 21) NTD 75-80% Inhibin-A FTS: First PAPP-A T21 83-90% 1.CVS or amniocentesis Trimester 11-12 (10- Free BHCG T18 80% 2.Need msAFP Screen, 3. detection of 14) NT NTD ----- miscarriages Ultrascreen Integrated 10-14 PAPP-A T21 92% Amniocentesis Screen 16-20 (15- NT T18 90% Quad Screen 21) NTD 80% First trimester serum, stepwise sequential screen, contingency sequential screen *SPR 5%
  • 21. Fetal Anomaly Detection Rate NTD- AFP alone 75-80% Trisomy 21- Triple test 70%- Down syndrome Trisomy 18- Triple test 80%- Edward’s syndrome *SP = screen positive rate 5%
  • 22.  AMNIOCENTESIS  CHORIONIC VILLUS SAMPLING  PERCUTANEOUS UMBILICAL CORD SAMPLING
  • 24. Chromosome analysis AF-AFP levels ONTD Acetylcholinesterase Risk of miscarriage associated with procedure 1/100-1/400 Advantage Disadvantage Late in gestation Highly reliable results 99+% Familiar oDecision making Long standing reputation oPrivacy oMom feels movement NTD detection Fear of needles Needle invades the sac
  • 25. Performed >10 wks-13 weeks Chromosome analysis Risk 1/100-1/200
  • 26. Disadvantage Higher loss rate Less access to procedure Higher chance of insufficient sample Early test=risk of sampling a fetus potentially destined to miscarry No ONTD testing More risk of vaginal bleeding/infection.
  • 27.
  • 28. Disadvantage ~2% risk of loss Technically difficult prior to 20 weeks Advantages Blood disorders such as hemophilia and anemia Useful for detection of Rh isoimmunization of the fetus (blood cell count and oxygen level)→erythroblastosis fetalis (HDN)  Fetal karyotype is available in 48 hours to study Chromosomal abnormalities Infections such as toxoplasmosis and rubella. The procedure is also used to perform blood transfusions to the fetus and to administer medication directly into the fetal blood supply.
  • 29. RISK Procedure Fetal Aneuploidy Related RISK
  • 30. Non-invasive prenatal screening will be based on blood collection from pregnant women and investigation of the fetal DNA present in maternal circulation Advantage  Do not put the fetus at risk for spontaneous abortion  Can be offered to all pregnancies  Provide a more effective prevention  Done at early pregnancy  High accuracy
  • 31.
  • 32. What is already Known Non-invasive prenatal detection of fetal trisomy 21 is achievable by Next Generation Sequencing (NGS) of maternal plasma DNA What are the Benefits of NGS  Among high risk pregnancies clinically indicated for invasive prenatal diagnosis, noninvasive Detection of fetal trisomy 21 can be achieved with the use of multiplexed massively Parallel sequencing of maternal plasma DNA with 100%sensitivity and 99.9% specificity,  Giving a 99% positive predictive value and 100% negative predictive value  The sequencing test could be used to rule out trisomy 21 among high risk pregnancies before proceeding to invasive diagnostic testing .This will reduce the number of cases requiring Amniocentesis or chorionic villus sampling
  • 33. Multiplexed maternal plasma sequencing / Next Generation Sequencing has overcome the difficulty that poses the small proportion of fetal DNA in maternal circulation  Large-scale validity study used multiplexed maternal plasma DNA sequencing analysis in pregnant women at high risk for fetal trisomy 21 to compare the conventional screening who underwent invasive procedures for full karyotyping  Research suggested that the invasive diagnostic procedures could be avoided in about 98% of the cases in a high-risk population  It is cost-effective and NOW easily obtained from diagnostic laboratories
  • 34.  Those whose age is 35 or above and do not choose to receive invasive prenatal tests  Those whose serum biochemical tests and ultrasound examinations suggest high risk of chromosome aneuploidies at the first and second trimester  Those that wish to have non-invasive fetal aneuploidies test for trisomy21, 18 and 13  Those that received IVF, or previously suffered from habitual abortion  Those that have contraindication of invasive prenatal testing, such as placenta previa, risk of miscarriage or infections (HIV, HBV etc)