Music from DNA strings Animesh Sharma
DNA strings? Word (sequence)  Made out of 4 letters (nucleotides) Certain patterns more prevalent Hold information  Coding Non Coding ...AGGGTTAGGGTTAGGGTTAGG...* ...AGGGTTAGGGTTAGGGTTAGG... ...AGGG TTAGGG TTAGGGTTAGG... *  A Highly Conserved Repetitive DNA Sequence,(TTAGGG)n,Present at the Telomeres of Human Chromosomes Moyzis et al.  PNAS | September 15, 1988 | vol. 85 | no. 18 | 6622-6626 Copyright © 1988 by the National Academy of Sciences ...UCCCAATCCCAAUCCCAAUCC...
Abstraction At nMers and repeat level  ...AGGGTTAGGGTTAGGGTTAGG... AGG = 0 GTT  = 1 ...  0  1  0  1  0  1  0  ... Frequency level ...AGGGTTAGGGTTAGGGTTAGG... G = 1 ...011100011100011100011... A = 1 ...100000100000100000100... T = 1 ...000011000011000011000... C = 1 ...000000000000000000000...
REF: Ab initio gene identification: prokaryote genome annotation with GeneScan and GLIMMER. Aggarwal G, Ramaswamy R. J Biosci. 2002 Feb;27(1 Suppl 1):7-14. G = 1 ...011100011100011100011... A = 1 ...100000100000100000100... T = 1 ...000011000011000011000... C = 1 ...000000000000000000000...
* MIDI-Perl ,  http://search.cpan.org/~sburke/MIDI-Perl-0.81/  OR  http://interglacial.com/~sburke/midi-perl/   Sean M. Burke 30 Jan 2005. What about Music? Encode  ^ MIDI::Perl * C – Channel O – Octave N – Note  ^ The Musician's Guide to MIDI by Christian Braut
Thanks I hope I took less than 15 mts !

Ysr Presentation Animesh Rev

  • 1.
    Music from DNAstrings Animesh Sharma
  • 2.
    DNA strings? Word(sequence) Made out of 4 letters (nucleotides) Certain patterns more prevalent Hold information Coding Non Coding ...AGGGTTAGGGTTAGGGTTAGG...* ...AGGGTTAGGGTTAGGGTTAGG... ...AGGG TTAGGG TTAGGGTTAGG... * A Highly Conserved Repetitive DNA Sequence,(TTAGGG)n,Present at the Telomeres of Human Chromosomes Moyzis et al. PNAS | September 15, 1988 | vol. 85 | no. 18 | 6622-6626 Copyright © 1988 by the National Academy of Sciences ...UCCCAATCCCAAUCCCAAUCC...
  • 3.
    Abstraction At nMersand repeat level ...AGGGTTAGGGTTAGGGTTAGG... AGG = 0 GTT = 1 ... 0 1 0 1 0 1 0 ... Frequency level ...AGGGTTAGGGTTAGGGTTAGG... G = 1 ...011100011100011100011... A = 1 ...100000100000100000100... T = 1 ...000011000011000011000... C = 1 ...000000000000000000000...
  • 4.
    REF: Ab initiogene identification: prokaryote genome annotation with GeneScan and GLIMMER. Aggarwal G, Ramaswamy R. J Biosci. 2002 Feb;27(1 Suppl 1):7-14. G = 1 ...011100011100011100011... A = 1 ...100000100000100000100... T = 1 ...000011000011000011000... C = 1 ...000000000000000000000...
  • 5.
    * MIDI-Perl , http://search.cpan.org/~sburke/MIDI-Perl-0.81/ OR http://interglacial.com/~sburke/midi-perl/ Sean M. Burke 30 Jan 2005. What about Music? Encode ^ MIDI::Perl * C – Channel O – Octave N – Note ^ The Musician's Guide to MIDI by Christian Braut
  • 6.
    Thanks I hopeI took less than 15 mts !