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A DEEPER DIVE INTO
HL7 FHIR
DAVID HAY | JULY 2016
Page 2 • 2016 © Orion Health™ group of companies
DR. DAVID HAY
Medical Doctor
Chair of HL7 New Zealand
Co-chair FHIR Management Group
Product Strategist Orion Health
Blog: fhirblog.com
Tooling: clinFHIR.com
Page 3Page 3
Agenda
▸ This talk
– More about Resources
• Datatype
• References
• Coded data
• Terminology
– Exchanging information
• Interoperability Paradigms
– Profiling FHIR
– Next steps for New Zealand
MORE ON
RESOURCES
Page 5Page 5
Scope of resources
▸ Clinical
– General
– Care Provision
– Medication / Immunizations
– Diagnostics / Genomics
▸ Identification
– Individuals, Groups, Entities
▸ Workflow
– Patient Management
– Decision Support / Quality
▸ Infrastructure
– Documents
– Exchange
▸ Conformance
– Terminology
– Content
▸ Financial
– Support
– Billing
– Payment
Page 6Page 6
Clinical Resources
General
AllergyIntolerance
Condition (Problem)
Procedure
ClinicalImpression
FamilyMemberHistory
RiskAssessment
DetectedIssue
Care Provision
CarePlan
Goal
ReferralRequest
ProcedureRequest
NutritionOrder
VisionPrescription
Medication &
Immunization
Medication
MedicationOrder
MedicationAdministration
MedicationDispense
MedicationStatement
Immunization
ImmunizationRecommendation
Diagnostics
Observation
DiagnosticReport
DiagnosticOrder
Specimen
BodySite
ImagingStudy
Clinical
http://hl7.org/fhir/resourcelist.html
Resource example
Resource Identity &
Metadata
Human Readable
Summary
Extension with URL to
definition
Standard Data:
• MRN
• Name
• Gender
• Birth Date
• Provider
Page 8Page 8
Definition
Page 9Page 9
Primitive data types
instant
decimal
integer
unsignedInt postiveInt code id
oid
markdown
base64Binary string url
boolean
dateTimetime date
Element
Page 10Page 10
Complex data types
Ratio
Timing
Coding
Age Distance SimpleQuantity Duration Count
AttachmentPeriod Range
Element
Identifier
Signature
CodeableConcept Quantity SampledData ContactPoint
HumanName
Annotation
Address
Money
Page 11Page 11
References between resources
Coded Properties
type
bodySuite
indication
performer.role
complication
relatedItem.type
Standard Properties
identifier (Identifier)
Performed (Datetime)
Procedure
Patient
Diagnostic ReportCondition
Subject
ReportRelatedItem
Encounter Performer
Encounter Practitioner
Page 12Page 12
Coded types
▸ Why have coded data ?
▸ code, Coding, CodeableConcept, (Quantity)
▸ Possible values defined in ValueSet resource
– Binding Strength
• Required (must come from set)
• Extensible (may use alternate if have to)
– Profile can tighten
• Preferred (don’t have to, but should)
• Example (set isn’t specified)
Page 13Page 13
ValueSet resource
▸ Defines list of possible values for a particular context
▸ Can reference external Terminologies
– Or define own sets
▸ Why?
– A common valueSet improves recording consistency
– Improves user experience (pick lists)
▸ Examples in New Zealand
– ED diagnoses (derived from SNOMED)
– NZ POCS (Pathology Observation Code Set) (derived from LOINC)
– List of NZ Iwi (defined in ValueSet)
Page 14Page 14
Terminology Sub-system
▸ SNOMED CT
▸ LOINC
▸ ICD 9/10
▸ A drug formulary - NZULM
▸ New Zealand DHBs
Code System:
Defines a set of
concepts with a
coherent meaning
Code
Display
Definition
Page 15Page 15
Terminology Sub-system
Code System:
Defines a set of
concepts with a
coherent meaning
Code
Display
Definition
Value Set:
A selection of a set
of codes for use in a
particular context
Selects
Page 16Page 16
Terminology Sub-system
Code System:
Defines a set of
concepts with a
coherent meaning
Code
Display
Definition
Value Set:
A selection of a set
of codes for use in a
particular context
Selects Binds Profile:
Type and Value
set reference
Page 17Page 17
Terminology Sub-system
Code System:
Defines a set of
concepts with a
coherent meaning
Code
Display
Definition
Value Set:
A selection of a set
of codes for use in a
particular context
Selects Binds Profile:
Type and Value
set reference
Resource Instance:
code/
Coding/
CodeableConcept
Refers to
Conforms
Page 18Page 18
Terminology Server
▸ Provides ‘services’ for consumers to access
terminology
– Hide the complex stuff from a consumer
▸ Uses Operations framework
– Get definition for a concept
– Find a concept
• Within a ValueSet
• Find matching
Terms
• Get Term
Definition
SHARING
INFORMATION
12
Page 20Page 20
Interoperability Paradigms
REST Documents
Messages
Services
(Operations)
Page 21Page 21
REST (API)
▸ “Representational State Transfer” – an architecture for how to connect systems in real
time
▸ Uses HTTP/S
▸ Simple to use
▸ Familiar to developers
▸ Very commonly used outside of healthCare – especially mobile
– Google, Facebook, Twitter
– JASON report in US called out the lack of an API
▸ CRUD
Page 22Page 22
Documents and Messages
Page 23Page 23
Services / Operations
▸ For more complex logic
– Especially server side
▸ Real-time
▸ Key part of ecosystem
▸ Examples
– Prescribing with DSS
– Terminology
– Immunization protocols
Page 24Page 24
Regardless of paradigm, the content is the same…
The Same Resources
FHIR
Repository
National Exchange
FHIR
Document
PROFILES
20
Page 26Page 26
Profiling
▸ Many different contexts in healthcare, but want a single set of Resources
▸ Need to be able to describe ‘usage of FHIR’ based on context and country
▸ Allow for these usage statements to:
– Authored in a structured manner
– Published in a repository
– Discoverable
– Used as the basis for validation, code, report and UI generation.
▸ 2 main aspects:
– Adding an extension
– Constraining a resource
▸ Profiling adapts FHIR for specific scenarios
Page 27Page 27
Extensions
▸ Only most common elements in base resource
– Keeps the resources small
– (Adding everything was the problem with version 3)
▸ Extensions allow other elements to be defined
– Same capabilities (dataType) as core elements
• Including resource references and terminology bindings
– Wire format unchanged
– Can extend properties and datatypes as well as the resource
▸ Extensions are normal
– Expect all real implementations to use extensions
▸ ‘normal’ and modifierExtensions
– Normal extensions can be ignored by a recipient
– Unknown modifierExtensions cannot be ignored
Page 28Page 28
Profiling a resource
Note: hardly any mandatory elements in the core spec!
Require that the identifier
uses the NHI– and is
required
Limit names to just
1 (instead of 0..*)
Limit maritalStatus to
another set of codes
that extends the one
from HL7 international
Add an extension
to support ‘Iwi’
Don’t support photo
Page 29Page 29
Practical steps exposing FHIR data
▸ Gap analysis
– Extensions required
– Elements unsupported
▸ Find or Create extension definitions (StructureDefinition)
– Prefer re-use
▸ Any other ‘conformance’ resources
– NamingSystem
– ValueSet
▸ Build profile
▸ Update Conformance resource
▸ Create samples
– Can use clinFHIR
▸ Possible create Implementation Guide
Page 30Page 30
Security
▸ FHIR is not a security standard
– Leverages existing standards –
for example
• TLS
• OAuth2
▸ Support in the specification
– Security tags (metadata)
– Specialized resources
• Provenance
• AuditEvent
▸ More detail
– http://hl7.org/fhir/security.html
Page 31Page 31
Building on FHIR
▸ Ecosystem
– SMART
▸ CDS-Hooks
– Integrate Decision Support
▸ Population Health
▸ Decision Support
Page 32
▸ Infrastructure
– Registries
– Terminology Servers
– Test servers
– Security
– National Services
• HPI, NHI
▸ Governance
– Clinically based
• ValueSets, Profiles,
Implementation Guides
▸ Pilots
▸ Education
▸ Support
Next steps for New Zealand
Page 33
▸ From HL7
– http://hl7.org/fhir/index.html
– wiki.hl7.org/index.php?title=FHIR
– http://www.fhir.org/
▸ Community
– https://chat.fhir.org/
– List server (fhir@lists.hl7.org )
– Stack Overflow (tag FHIR)
▸ Blogs
– http://www.healthintersections.com.au/
– https://fhirblog.com/
– https://thefhirplace.com/
▸ Libraries
– Java (http://hapifhir.io/)
– C# (NuGet HL7.FHIR)
▸ Tooling
– Forge (http://fhir.furore.com/Forge)
– http://clinfhir.com/
▸ Test servers
– http://wiki.hl7.org/index.php?title=Public
ly_Available_FHIR_Servers_for_testing
▸ White papers – http://orionhealth.com
– FHIR - Sparking innovation in health
information sharing
– FHIR – Ignites healthcare sharing
More information
Page 34 • 2016 © Orion Health™ group of companies
In Summary
▸ FHIR is the latest HL7 interoperability standard
▸ Enormous interest locally and internationally
▸ Allows clinicians and patients to be more involved
▸ Promises to revolutionise sharing of healthcare information
▸ Is not a silver bullet
▸ FHIR promotes Innovation
▸ FHIR is disruptive
▸ FHIR IS in your future
For more information on FHIR see here: http://hl7.org/fhir/index.html
itx presentation: FHIR and the New Zealand EHR - deeper dive
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itx presentation: FHIR and the New Zealand EHR - deeper dive

  • 1. A DEEPER DIVE INTO HL7 FHIR DAVID HAY | JULY 2016
  • 2. Page 2 • 2016 © Orion Health™ group of companies DR. DAVID HAY Medical Doctor Chair of HL7 New Zealand Co-chair FHIR Management Group Product Strategist Orion Health Blog: fhirblog.com Tooling: clinFHIR.com
  • 3. Page 3Page 3 Agenda ▸ This talk – More about Resources • Datatype • References • Coded data • Terminology – Exchanging information • Interoperability Paradigms – Profiling FHIR – Next steps for New Zealand
  • 5. Page 5Page 5 Scope of resources ▸ Clinical – General – Care Provision – Medication / Immunizations – Diagnostics / Genomics ▸ Identification – Individuals, Groups, Entities ▸ Workflow – Patient Management – Decision Support / Quality ▸ Infrastructure – Documents – Exchange ▸ Conformance – Terminology – Content ▸ Financial – Support – Billing – Payment
  • 6. Page 6Page 6 Clinical Resources General AllergyIntolerance Condition (Problem) Procedure ClinicalImpression FamilyMemberHistory RiskAssessment DetectedIssue Care Provision CarePlan Goal ReferralRequest ProcedureRequest NutritionOrder VisionPrescription Medication & Immunization Medication MedicationOrder MedicationAdministration MedicationDispense MedicationStatement Immunization ImmunizationRecommendation Diagnostics Observation DiagnosticReport DiagnosticOrder Specimen BodySite ImagingStudy Clinical http://hl7.org/fhir/resourcelist.html
  • 7. Resource example Resource Identity & Metadata Human Readable Summary Extension with URL to definition Standard Data: • MRN • Name • Gender • Birth Date • Provider
  • 9. Page 9Page 9 Primitive data types instant decimal integer unsignedInt postiveInt code id oid markdown base64Binary string url boolean dateTimetime date Element
  • 10. Page 10Page 10 Complex data types Ratio Timing Coding Age Distance SimpleQuantity Duration Count AttachmentPeriod Range Element Identifier Signature CodeableConcept Quantity SampledData ContactPoint HumanName Annotation Address Money
  • 11. Page 11Page 11 References between resources Coded Properties type bodySuite indication performer.role complication relatedItem.type Standard Properties identifier (Identifier) Performed (Datetime) Procedure Patient Diagnostic ReportCondition Subject ReportRelatedItem Encounter Performer Encounter Practitioner
  • 12. Page 12Page 12 Coded types ▸ Why have coded data ? ▸ code, Coding, CodeableConcept, (Quantity) ▸ Possible values defined in ValueSet resource – Binding Strength • Required (must come from set) • Extensible (may use alternate if have to) – Profile can tighten • Preferred (don’t have to, but should) • Example (set isn’t specified)
  • 13. Page 13Page 13 ValueSet resource ▸ Defines list of possible values for a particular context ▸ Can reference external Terminologies – Or define own sets ▸ Why? – A common valueSet improves recording consistency – Improves user experience (pick lists) ▸ Examples in New Zealand – ED diagnoses (derived from SNOMED) – NZ POCS (Pathology Observation Code Set) (derived from LOINC) – List of NZ Iwi (defined in ValueSet)
  • 14. Page 14Page 14 Terminology Sub-system ▸ SNOMED CT ▸ LOINC ▸ ICD 9/10 ▸ A drug formulary - NZULM ▸ New Zealand DHBs Code System: Defines a set of concepts with a coherent meaning Code Display Definition
  • 15. Page 15Page 15 Terminology Sub-system Code System: Defines a set of concepts with a coherent meaning Code Display Definition Value Set: A selection of a set of codes for use in a particular context Selects
  • 16. Page 16Page 16 Terminology Sub-system Code System: Defines a set of concepts with a coherent meaning Code Display Definition Value Set: A selection of a set of codes for use in a particular context Selects Binds Profile: Type and Value set reference
  • 17. Page 17Page 17 Terminology Sub-system Code System: Defines a set of concepts with a coherent meaning Code Display Definition Value Set: A selection of a set of codes for use in a particular context Selects Binds Profile: Type and Value set reference Resource Instance: code/ Coding/ CodeableConcept Refers to Conforms
  • 18. Page 18Page 18 Terminology Server ▸ Provides ‘services’ for consumers to access terminology – Hide the complex stuff from a consumer ▸ Uses Operations framework – Get definition for a concept – Find a concept • Within a ValueSet • Find matching Terms • Get Term Definition
  • 20. Page 20Page 20 Interoperability Paradigms REST Documents Messages Services (Operations)
  • 21. Page 21Page 21 REST (API) ▸ “Representational State Transfer” – an architecture for how to connect systems in real time ▸ Uses HTTP/S ▸ Simple to use ▸ Familiar to developers ▸ Very commonly used outside of healthCare – especially mobile – Google, Facebook, Twitter – JASON report in US called out the lack of an API ▸ CRUD
  • 22. Page 22Page 22 Documents and Messages
  • 23. Page 23Page 23 Services / Operations ▸ For more complex logic – Especially server side ▸ Real-time ▸ Key part of ecosystem ▸ Examples – Prescribing with DSS – Terminology – Immunization protocols
  • 24. Page 24Page 24 Regardless of paradigm, the content is the same… The Same Resources FHIR Repository National Exchange FHIR Document
  • 26. Page 26Page 26 Profiling ▸ Many different contexts in healthcare, but want a single set of Resources ▸ Need to be able to describe ‘usage of FHIR’ based on context and country ▸ Allow for these usage statements to: – Authored in a structured manner – Published in a repository – Discoverable – Used as the basis for validation, code, report and UI generation. ▸ 2 main aspects: – Adding an extension – Constraining a resource ▸ Profiling adapts FHIR for specific scenarios
  • 27. Page 27Page 27 Extensions ▸ Only most common elements in base resource – Keeps the resources small – (Adding everything was the problem with version 3) ▸ Extensions allow other elements to be defined – Same capabilities (dataType) as core elements • Including resource references and terminology bindings – Wire format unchanged – Can extend properties and datatypes as well as the resource ▸ Extensions are normal – Expect all real implementations to use extensions ▸ ‘normal’ and modifierExtensions – Normal extensions can be ignored by a recipient – Unknown modifierExtensions cannot be ignored
  • 28. Page 28Page 28 Profiling a resource Note: hardly any mandatory elements in the core spec! Require that the identifier uses the NHI– and is required Limit names to just 1 (instead of 0..*) Limit maritalStatus to another set of codes that extends the one from HL7 international Add an extension to support ‘Iwi’ Don’t support photo
  • 29. Page 29Page 29 Practical steps exposing FHIR data ▸ Gap analysis – Extensions required – Elements unsupported ▸ Find or Create extension definitions (StructureDefinition) – Prefer re-use ▸ Any other ‘conformance’ resources – NamingSystem – ValueSet ▸ Build profile ▸ Update Conformance resource ▸ Create samples – Can use clinFHIR ▸ Possible create Implementation Guide
  • 30. Page 30Page 30 Security ▸ FHIR is not a security standard – Leverages existing standards – for example • TLS • OAuth2 ▸ Support in the specification – Security tags (metadata) – Specialized resources • Provenance • AuditEvent ▸ More detail – http://hl7.org/fhir/security.html
  • 31. Page 31Page 31 Building on FHIR ▸ Ecosystem – SMART ▸ CDS-Hooks – Integrate Decision Support ▸ Population Health ▸ Decision Support
  • 32. Page 32 ▸ Infrastructure – Registries – Terminology Servers – Test servers – Security – National Services • HPI, NHI ▸ Governance – Clinically based • ValueSets, Profiles, Implementation Guides ▸ Pilots ▸ Education ▸ Support Next steps for New Zealand
  • 33. Page 33 ▸ From HL7 – http://hl7.org/fhir/index.html – wiki.hl7.org/index.php?title=FHIR – http://www.fhir.org/ ▸ Community – https://chat.fhir.org/ – List server (fhir@lists.hl7.org ) – Stack Overflow (tag FHIR) ▸ Blogs – http://www.healthintersections.com.au/ – https://fhirblog.com/ – https://thefhirplace.com/ ▸ Libraries – Java (http://hapifhir.io/) – C# (NuGet HL7.FHIR) ▸ Tooling – Forge (http://fhir.furore.com/Forge) – http://clinfhir.com/ ▸ Test servers – http://wiki.hl7.org/index.php?title=Public ly_Available_FHIR_Servers_for_testing ▸ White papers – http://orionhealth.com – FHIR - Sparking innovation in health information sharing – FHIR – Ignites healthcare sharing More information
  • 34. Page 34 • 2016 © Orion Health™ group of companies In Summary ▸ FHIR is the latest HL7 interoperability standard ▸ Enormous interest locally and internationally ▸ Allows clinicians and patients to be more involved ▸ Promises to revolutionise sharing of healthcare information ▸ Is not a silver bullet ▸ FHIR promotes Innovation ▸ FHIR is disruptive ▸ FHIR IS in your future For more information on FHIR see here: http://hl7.org/fhir/index.html

Editor's Notes

  1. Quantity has type of unit
  2. Eg condition with different specialties
  3. Eg condition with different specialties
  4. Eg condition with different specialties
  5. Peter to talk more Expand http://fhir-dev.healthintersections.com.au/open/ValueSet/valueset-condition-code/$expand?filter=diabetes Lookup http://fhir-dev.healthintersections.com.au/open/ValueSet/$lookup?system=http://loinc.org&code=8480-6