This study analyzes risk factors for marginal bone loss (MBL) in dental implants, focusing on the intra-patient correlation of responses. Utilizing a historical prospective cohort design, the study highlights the impact of various patient-specific and implant-specific exposures on MBL over time. The findings suggest that naive analysis may underestimate standard errors and bias inference regarding the estimated effects, emphasizing the importance of recognizing intra-patient correlations.