Improving the Plug-in Interface for CellDesigner v2.6
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Presented on 17/7/2014 for a weekly group meeting with Professor Funahashi, main developer of CellDesigner.
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Crescat Event for concert promoters and event agencies. Crescat Venue for music venues, conference centers, wedding venues, concert halls and more. And Crescat Festival for festivals, conferences and complex events.
With a wide range of popular features such as event scheduling, shift management, volunteer and crew coordination, artist booking and much more, Crescat is designed for customisation and ease-of-use.
Over 125,000 events have been planned in Crescat and with hundreds of customers of all shapes and sizes, from boutique event agencies through to international concert promoters, Crescat is rigged for success. What's more, we highly value feedback from our users and we are constantly improving our software with updates, new features and improvements.
If you plan events, run a venue or produce festivals and you're looking for ways to make your life easier, then we have a solution for you. Try our software for free or schedule a no-obligation demo with one of our product specialists today at crescat.io
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Improving the Plug-in Interface for CellDesigner v2.6
- 1. Student: Ibrahim Vazirabad Mentors: Dr. Andreas Dräger, Alex Thomas
- 2. Project Motivation Why improve CellDesigner/JSBML plugin interface? 1. Allows increased debugging capabilities. 2. Harness power of CellDesigner. 3. CellDesigner can become platform for JSBML programs 17 July 2014 Ibrahim Vazirabad
- 3. Project Overview CellDesigner API accesses info that existing plugin interface does not access. Layout: element position, size. Appearance: Component color, shapes, line widths/styles, etc. CellDesigner/JSBML model synchronization. 17 July 2014 Ibrahim Vazirabad
- 4. Project Goals Develop dual-function CellDesigner plugin. 1. Obtains CellDesigner's plugin structure and copy to JSBML structures. 2. Visualization of SBML network changes via JTree. Synchronize all changes between plugin and CellDesigner model. First step: map CellDesigner plugin structure to Layout/Render. PluginCompartment, PluginSpeciesAlias, PluginReaction 17 July 2014 Ibrahim Vazirabad
- 5. PluginCompartment-JSBML Mapping 17 July 2014 Ibrahim Vazirabad
- 6. PluginSpeciesAlias-JSBML Mapping 17 July 2014 Ibrahim Vazirabad
- 7. PluginReaction-JSBML Mapping 17 July 2014 Ibrahim Vazirabad
- 8. Current Progress: Plugin Development 1. Have added CellDesigner Layout data to JSBML structure. Functions 1. SBML export/visualization 2. JTree-based layout visualization Have started work on synchronizing CellDesigner and JSBML data structures. 17 July 2014 Ibrahim Vazirabad
- 9. 1. SBML Export/Visualization Plugin 17 July 2014 Ibrahim Vazirabad
- 10. 1. SBML Export/Visualization Plugin 17 July 2014 Ibrahim Vazirabad
- 11. 2. JTree: Layout Visualization 17 July 2014 Ibrahim Vazirabad
- 12. CellDesigner/JSBML Synchronization 17 July 2014 Ibrahim Vazirabad
- 13. CellDesigner/JSBML Synchronization 17 July 2014 Ibrahim Vazirabad
- 14. Difficulties So Far: Reaction Text 17 July 2014 Ibrahim Vazirabad How is Reaction text position calculated?
- 15. Difficulties So Far: PluginModel Objects 17 July 2014 Ibrahim Vazirabad Want to check if two PluginModels are identical. How can it be done?
- 16. Difficulties So Far: Batch File 17 July 2014 Ibrahim Vazirabad @ECHO OFF MOVE /Y "C:UsersYusef-PCworkspace-2JSBMLmodulescelldesignerlibjsbml-1.0-incl-libs.jar" "C:Program Files (x86)CellDesigner4.4lib" MOVE /Y "C:UsersYusef-PCworkspace-2JSBMLmodulescelldesignerdistjsbml-celldesigner- 1.0ExamplePlugin.jar" "C:Program Files (x86)CellDesigner4.4plugin" start "" "C:Program Files (x86)CellDesigner4.4CellDesigner4.4.exe" /I
- 17. Thank you! 17 July 2014 Ibrahim Vazirabad