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The EOSC Future, C-SCALE, DICE, EGI-ACE, OpenAIRE-Nexus, Reliance and ARCHIVER projects are funded by the
European Union Horizon Programme calls INFRAEOSC-03-2020 and INFRAEOSC-07-2020 and H2020-ICT-2018-20
with
European Research Projects as
EOSC Service Providers
Pedro Principe (University of Minho / OpenAIRE)
Alexandre Bonvin (University of Utrecht)
Susanna Assunta Sansone (University of Oxford)
Agenda
1. 11.00-11.10- Introduction - Pedro Principe (University of Minho)
1. 11.10-11.15- HADDOCK Use Case -
Alexandre Bonvin (University of Utrecht)
1. 11.15-11.20 - FAIRsharing Use Case -
Susanna-Assunta Sansone (University of Oxford)
1. 11.20-11.45 - Q&A lead by Katrien Witpas (Arctik & EOSC Future)
Research Project as EOSC service providers (1 / 3)
SERVICES
Compute Resources, Data
management services, Virtual
Research Environments, Data
Analysis tools…
RESEARCH PRODUCTS
Publications, Datasets, Software,
other research outputs…
+ Training tools (resources & materials)
What Research Projects can offer to EOSC
Research Project as EOSC service providers (2 / 3)
Why Research projects should become an EOSC provider
• Increase visibility of research resources,
content and services.
• Improve discoverability of the project
research outcomes.
• Sharing resources beyond community
boundaries.
• Reporting scientific production to funders
(e.g. EC) and scholarly communication
services.
• Direct access to Data and services
• Contribute & access training materials,
helpdesk service and OS metrics.
Research Project as EOSC service providers (3 / 3)
★ Provider (of the service as outcome of a project)
fulfilling necessary info in the Provider Profile.
★ Service (offered by a Provider) available to
customers in Europe with sufficient maturity
(>=TRL8)
★ Service targeted to EOSC communities and to
build on/leverage EOSC capability
★ Service with a completed profile with basic info
of the resource & policies, not forgetting the
helpdesk function and the training materials.
For onboarding of the research project resource (service/tool…)
Tip: do not forget to integrate the onboarding features into the research project exploitation or sustainability plan.
The EOSC Future, C-SCALE, DICE, EGI-ACE, OpenAIRE-Nexus, Reliance and ARCHIVER projects are funded by the
European Union Horizon Programme calls INFRAEOSC-03-2020 and INFRAEOSC-07-2020 and H2020-ICT-2018-20
with
European Research Projects as
EOSC Service Providers
HADDOCK/WeNMR Use Case
Alexandre Bonvin (University of Utrecht)
Domain: life sciences / structural biology
Understand life at a molecular level
Main use cases:
• Disease-causing mutations
• Engineer better molecules for material, health or
food applications
• Obtain a starting point for drug design to combat
disease
www.wenmr.eu
WeNMR & EOSC
https://providers.eosc-portal.eu/dashboard/wenmr
European Open Science Cloud
CC
Under EGI-Engage
How did we get there?
The e-Infrastructure landscape over the years
Why registering in EOSC?
▪ The WeNMR services have been in production since >10 years
under various projects (eNMR, WeNMR, West-Life, EOSC-Hub,
EGI-ACE)
▪ Thematic services under EOSC
▪ Access to resources formalized via EGI through a SLA agreement
valid until 06/2023
▪ 50+ million CPU hours (opportunistic access)
▪ 500+ cloud CPU cores
▪ ~60 TB storage
• > 28000 registered users
• > 425000 served runs since
June 2008
• > 55% on EOSC/EGI HTC
resources
De Vries et al. Nature Prot. 2010
Van Zundert et al. J.Mol.Biol. 2016
https://wenmr.science.uu.nl
Impact: Resources usage
Impact: User submissions
Impact: Citations of resources
In summary
▪ A long history of providing services to a worldwide user community
▪A long history of using EU e-Infrastructure (HTC)
▪WeNMR well-established thematic service provider
▪Natural transition into EOSC
▪Main benefits:
▪ Ensuring access to computational resources
▪ Strong network that helps sustainability (e.g. via EU projects)
The EOSC Future, C-SCALE, DICE, EGI-ACE, OpenAIRE-Nexus, Reliance and ARCHIVER projects are funded by the
European Union Horizon Programme calls INFRAEOSC-03-2020 and INFRAEOSC-07-2020 and H2020-ICT-2018-20
with
European Research Projects as
EOSC Service Providers
FAIRsharing Use Case
Susanna-Assunta Sansone (University of Oxford)
URL: https://marketplace.eosc-portal.eu/services/fairsharing-c5d1ca3e-ef5a-4a98-845e-46e72ffb3419
FAIRsharing in the EOSC Marketplace
https://fairsharing.org/communities
It provides curated, community-vetted descriptions and relationship graphs
of standards, databases and policies in all disciplines
An informative and educational resource
Identifiers
Terminologies Guidelines
Formats
COMMUNITY STANDARDS
POLICIES
by funders, journals
and other organizations
DATABASES
including repositories
and knowledgebases
Guides consumers to discover, select and use these resources with confidence
Helps producers to make their resources more visible, more widely adopted and cited
Promoting databases, standards, policies
Total of
over 3620
resources
(April 2022)
repositories
standards
policies
EOSC category:
generic, all
disciplines
Classification of standards, repositories and
policies is powered by our open
Subject Ontology of 436 terms
https://fairsharing.org/browse/subject
https://github.com/FAIRsharing/subject-ontology
Target users: all stakeholders
Users, adopters and collaborators include:
https://fairsharing.org/communities
Why registering in EOSC?
An endorsed output of the
FAIRsharing WG (since 2015):
A WG (since 2015) in:
A recommended resource in EOSC reports
Users from all stakeholder groups
Researchers Developers and curators Journal publishers
Societies and Alliances
Librarians and Trainers Funders
A natural step, because FAIRsharing is already an element of the EOSC ecosystem
Contributing to EOSC and its knowledge graphs
Working with EOSC clusters to
curate the descriptions and
visualize the relations of their
databases and the data/metadata
standards they implement
(as well as cross-walks)
=> “FAIR profiles” Collection URL: fairsharing.org/graph/3515;
each record has a DOI
Collection URL: fairsharing.org/graph/3513;
each record has a DOI
Findability
Sitemap.xml, JSON
Markup with Schema.org for
search indexes
DOI unique persistent
identifiers for each record
ORCID for author credit and
authentication
Accessibility
read/write REST API
read OAI-PMH
Interoperability
JSON markup
Standardized semantics
Cross-links to or import from
records in other registries
ROR for organizations (ongoing)
FundRef for funders (ongoing)
Reusability
CC BY 4.0 license
JSON export
Following EOSC’s FAIRness & FAIR enablement
In summary
○ Launched in 2011, FAIRsharing has also matured under EOSC, working with and for many communities
■ it is part of EOSC projects, working with the clusters, and it is de facto element of its ecosystem
○ The FAIRsharing onboarding process in the EOSC Portal:
■ first discussion Nov 2018; the process was evolving; first release in Dec 2019; updates made in 2021
○ For FAIRsharing being in the EOSC Portal is
■ a natural step: a resource can never be visible and discoverable enough!
■ a way to identify how our content (standards, databases, policies) can contribute to building the Portal
● EOSC Research Product Catalog, via our existing collaboration with OpenAIRE
● EOSC Interoperability Registry, via EOSC Future
○ Prospective benefits:
■ More users for FAIRsharing
■ More and new use of its content by other services
■ More collaborative activities
Q&A
1. What will I obtain by registering? Triggers & benefits to onboard
2. What type of resource can be onboarded?
3. How can we onboard end-users to our services via the EOSC Portal?
4. How can we measure impact?

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European Research Projects as EOSC Service Providers

  • 1. The EOSC Future, C-SCALE, DICE, EGI-ACE, OpenAIRE-Nexus, Reliance and ARCHIVER projects are funded by the European Union Horizon Programme calls INFRAEOSC-03-2020 and INFRAEOSC-07-2020 and H2020-ICT-2018-20 with European Research Projects as EOSC Service Providers Pedro Principe (University of Minho / OpenAIRE) Alexandre Bonvin (University of Utrecht) Susanna Assunta Sansone (University of Oxford)
  • 2. Agenda 1. 11.00-11.10- Introduction - Pedro Principe (University of Minho) 1. 11.10-11.15- HADDOCK Use Case - Alexandre Bonvin (University of Utrecht) 1. 11.15-11.20 - FAIRsharing Use Case - Susanna-Assunta Sansone (University of Oxford) 1. 11.20-11.45 - Q&A lead by Katrien Witpas (Arctik & EOSC Future)
  • 3. Research Project as EOSC service providers (1 / 3) SERVICES Compute Resources, Data management services, Virtual Research Environments, Data Analysis tools… RESEARCH PRODUCTS Publications, Datasets, Software, other research outputs… + Training tools (resources & materials) What Research Projects can offer to EOSC
  • 4. Research Project as EOSC service providers (2 / 3) Why Research projects should become an EOSC provider • Increase visibility of research resources, content and services. • Improve discoverability of the project research outcomes. • Sharing resources beyond community boundaries. • Reporting scientific production to funders (e.g. EC) and scholarly communication services. • Direct access to Data and services • Contribute & access training materials, helpdesk service and OS metrics.
  • 5. Research Project as EOSC service providers (3 / 3) ★ Provider (of the service as outcome of a project) fulfilling necessary info in the Provider Profile. ★ Service (offered by a Provider) available to customers in Europe with sufficient maturity (>=TRL8) ★ Service targeted to EOSC communities and to build on/leverage EOSC capability ★ Service with a completed profile with basic info of the resource & policies, not forgetting the helpdesk function and the training materials. For onboarding of the research project resource (service/tool…) Tip: do not forget to integrate the onboarding features into the research project exploitation or sustainability plan.
  • 6. The EOSC Future, C-SCALE, DICE, EGI-ACE, OpenAIRE-Nexus, Reliance and ARCHIVER projects are funded by the European Union Horizon Programme calls INFRAEOSC-03-2020 and INFRAEOSC-07-2020 and H2020-ICT-2018-20 with European Research Projects as EOSC Service Providers HADDOCK/WeNMR Use Case Alexandre Bonvin (University of Utrecht)
  • 7. Domain: life sciences / structural biology Understand life at a molecular level Main use cases: • Disease-causing mutations • Engineer better molecules for material, health or food applications • Obtain a starting point for drug design to combat disease
  • 10. European Open Science Cloud CC Under EGI-Engage How did we get there? The e-Infrastructure landscape over the years
  • 11. Why registering in EOSC? ▪ The WeNMR services have been in production since >10 years under various projects (eNMR, WeNMR, West-Life, EOSC-Hub, EGI-ACE) ▪ Thematic services under EOSC ▪ Access to resources formalized via EGI through a SLA agreement valid until 06/2023 ▪ 50+ million CPU hours (opportunistic access) ▪ 500+ cloud CPU cores ▪ ~60 TB storage
  • 12. • > 28000 registered users • > 425000 served runs since June 2008 • > 55% on EOSC/EGI HTC resources De Vries et al. Nature Prot. 2010 Van Zundert et al. J.Mol.Biol. 2016 https://wenmr.science.uu.nl
  • 13.
  • 16. Impact: Citations of resources
  • 17. In summary ▪ A long history of providing services to a worldwide user community ▪A long history of using EU e-Infrastructure (HTC) ▪WeNMR well-established thematic service provider ▪Natural transition into EOSC ▪Main benefits: ▪ Ensuring access to computational resources ▪ Strong network that helps sustainability (e.g. via EU projects)
  • 18. The EOSC Future, C-SCALE, DICE, EGI-ACE, OpenAIRE-Nexus, Reliance and ARCHIVER projects are funded by the European Union Horizon Programme calls INFRAEOSC-03-2020 and INFRAEOSC-07-2020 and H2020-ICT-2018-20 with European Research Projects as EOSC Service Providers FAIRsharing Use Case Susanna-Assunta Sansone (University of Oxford)
  • 20. It provides curated, community-vetted descriptions and relationship graphs of standards, databases and policies in all disciplines An informative and educational resource Identifiers Terminologies Guidelines Formats COMMUNITY STANDARDS POLICIES by funders, journals and other organizations DATABASES including repositories and knowledgebases
  • 21. Guides consumers to discover, select and use these resources with confidence Helps producers to make their resources more visible, more widely adopted and cited Promoting databases, standards, policies Total of over 3620 resources (April 2022) repositories standards policies
  • 22. EOSC category: generic, all disciplines Classification of standards, repositories and policies is powered by our open Subject Ontology of 436 terms https://fairsharing.org/browse/subject https://github.com/FAIRsharing/subject-ontology
  • 23. Target users: all stakeholders
  • 24. Users, adopters and collaborators include: https://fairsharing.org/communities Why registering in EOSC? An endorsed output of the FAIRsharing WG (since 2015): A WG (since 2015) in: A recommended resource in EOSC reports Users from all stakeholder groups Researchers Developers and curators Journal publishers Societies and Alliances Librarians and Trainers Funders A natural step, because FAIRsharing is already an element of the EOSC ecosystem
  • 25. Contributing to EOSC and its knowledge graphs Working with EOSC clusters to curate the descriptions and visualize the relations of their databases and the data/metadata standards they implement (as well as cross-walks) => “FAIR profiles” Collection URL: fairsharing.org/graph/3515; each record has a DOI Collection URL: fairsharing.org/graph/3513; each record has a DOI
  • 26. Findability Sitemap.xml, JSON Markup with Schema.org for search indexes DOI unique persistent identifiers for each record ORCID for author credit and authentication Accessibility read/write REST API read OAI-PMH Interoperability JSON markup Standardized semantics Cross-links to or import from records in other registries ROR for organizations (ongoing) FundRef for funders (ongoing) Reusability CC BY 4.0 license JSON export Following EOSC’s FAIRness & FAIR enablement
  • 27. In summary ○ Launched in 2011, FAIRsharing has also matured under EOSC, working with and for many communities ■ it is part of EOSC projects, working with the clusters, and it is de facto element of its ecosystem ○ The FAIRsharing onboarding process in the EOSC Portal: ■ first discussion Nov 2018; the process was evolving; first release in Dec 2019; updates made in 2021 ○ For FAIRsharing being in the EOSC Portal is ■ a natural step: a resource can never be visible and discoverable enough! ■ a way to identify how our content (standards, databases, policies) can contribute to building the Portal ● EOSC Research Product Catalog, via our existing collaboration with OpenAIRE ● EOSC Interoperability Registry, via EOSC Future ○ Prospective benefits: ■ More users for FAIRsharing ■ More and new use of its content by other services ■ More collaborative activities
  • 28. Q&A 1. What will I obtain by registering? Triggers & benefits to onboard 2. What type of resource can be onboarded? 3. How can we onboard end-users to our services via the EOSC Portal? 4. How can we measure impact?