Presentation at the EOSC providers days, 27 April 2022, by Pedro Principe (University of Minho / OpenAIRE); Alexandre Bonvin (University of Utrecht); Susanna Assunta Sansone (University of Oxford).
European Open Science Cloud: Concept, status and opportunitiesEOSC-hub project
European Open Science Cloud: Concept, status and opportunities.
Presentation given by Gergely Sipos at the International Symposium on Grids and Clouds 2019 event in Taiwan.
The Ascent of Open Science and the European Open Science CloudTiziana Ferrari
Open science is becoming more and more part of the daily practice in conducting science. Around the world, researchers are increasingly aware of the value and importance of open science. As scientific research becomes highly data-driven and dependent on computing, scientists are conscious of the growing need to share data, software and infrastructure to reduce wasteful duplication and increase economies of scale. In an ideal world, every step of the research process would be public and transparent – the full methodology and all the tools used, as well as the data, would be accessible to the public and all groups without restriction, enabling reproducibility and refinement by other scientists.
This presentation will show case a number of success stories indicating how federated digital infrastructure, that have been sustained by the member states and the European Commission, have become an indispensable tool to enable collaboration ad sharing.
The European Open Science Cloud was launched by the European Commission in 2016 aiming to (1) increase the ability to exploit research data across scientific disciplines and between the public and private sector, (2) interconnect existing and new digital infrastructures in Europe and (3) support open science.
The presentation showcases how open data, open data analytics and open e-Infrastructures like EGI (https://www.egi.eu/) have been key enables of scientific discoveries from the discovery of gravitational waves with LIGO-VIRGO to drug design with the molecular modelling tools of WeNMR.
EOSC-hub (https://www.eosc-hub.eu/) - the first and the largest of the EOSC implementation projects of the H2020 funding programme, has succeeded in delivering some of the building blocks like the EOSC portal and Marketplace, tools and processes for federating data and services providers, harmonized policies, a federated AAI infrastructure, Competence Centres to support research infrastructures in their complex digital needs, interoperability guidelines and the Early Adopter Programme to provide expert support and service capacity to research projects.
European Open Science Cloud: Concept, status and opportunitiesEOSC-hub project
European Open Science Cloud: Concept, status and opportunities.
Presentation given by Gergely Sipos at the International Symposium on Grids and Clouds 2019 event in Taiwan.
The Ascent of Open Science and the European Open Science CloudTiziana Ferrari
Open science is becoming more and more part of the daily practice in conducting science. Around the world, researchers are increasingly aware of the value and importance of open science. As scientific research becomes highly data-driven and dependent on computing, scientists are conscious of the growing need to share data, software and infrastructure to reduce wasteful duplication and increase economies of scale. In an ideal world, every step of the research process would be public and transparent – the full methodology and all the tools used, as well as the data, would be accessible to the public and all groups without restriction, enabling reproducibility and refinement by other scientists.
This presentation will show case a number of success stories indicating how federated digital infrastructure, that have been sustained by the member states and the European Commission, have become an indispensable tool to enable collaboration ad sharing.
The European Open Science Cloud was launched by the European Commission in 2016 aiming to (1) increase the ability to exploit research data across scientific disciplines and between the public and private sector, (2) interconnect existing and new digital infrastructures in Europe and (3) support open science.
The presentation showcases how open data, open data analytics and open e-Infrastructures like EGI (https://www.egi.eu/) have been key enables of scientific discoveries from the discovery of gravitational waves with LIGO-VIRGO to drug design with the molecular modelling tools of WeNMR.
EOSC-hub (https://www.eosc-hub.eu/) - the first and the largest of the EOSC implementation projects of the H2020 funding programme, has succeeded in delivering some of the building blocks like the EOSC portal and Marketplace, tools and processes for federating data and services providers, harmonized policies, a federated AAI infrastructure, Competence Centres to support research infrastructures in their complex digital needs, interoperability guidelines and the Early Adopter Programme to provide expert support and service capacity to research projects.
Governance and Sustainability of EOSC: ambitions, challenges and opportunitiesEOSCpilot .eu
This presentation was held at the 1st EOSC Stakeholder Forum 28-29/11/2017 in Brussels.
For more information on the 1st EOSC Stakeholder Forum visit: https://eoscpilot.eu/eosc-stakeholder-forum-shaping-future-eosc
Follow EOSCpilot on Twitter: https://twitter.com/eoscpilot
and LinkedIn: https://uk.linkedin.com/in/eoscpiloteu
European Open Science Cloud architecture future viewJisc
This online European Open Science Cloud (EOSC) event was held on 15 December 2021.
You’ll get information about:
- Developments in the EOSC Association
- The work of the new EOSC Advisory Groups and Task Forces
- What’s happening in some of the EOSC implementation projects
- Ways you can become involved in EOSC
EGI and EUDAT support to the PaNOSC projectEGI Federation
Data transfer & archivingm, and Jupyter on the EGI Federated Cloud at the core of EGI and EUDAT support to Photon and Neutron science in the PaNOSC project
Health and Wellbeing Living Lab Symposium PresentationsVITALISEProject
The Health and Wellbeing Living Lab Symposium is dedicated to showcasing the outcomes of the VITALISE project, which focuses on harmonizing Living Lab services and procedures while recognizing Living Labs as integral Research Infrastructures. Over the past three years, a collaborative effort among Living Labs in Health has actively demonstrated the significance of Living Labs as Research Infrastructures, effectively representing the global Living Lab community. The work undertaken in VITALISE aligns with the overarching vision of Living Labs developed over the last 15 years, manifesting in project results that advance the recognition and quality of harmonized Living Labs.
This project has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 101007990 The symposium's primary objective is to engage in collective reflection with the European Commission and relevant stakeholders and beneficiaries of Research Infrastructures. The aim is to discuss and plan the next steps toward a new era where Research Infrastructures are open and actively involve communities as powerful tools for co-research.
The European Open Science Cloud: just what is it?Carole Goble
Presented at Jisc and CNI leaders conference 2018, 2 July 2018, Oxford, UK (https://www.jisc.ac.uk/events/jisc-and-cni-leaders-conference-02-jul-2018). The European Open Science Cloud. What exactly is it? In principle it is conceived as a virtual environment with open and seamless services for storage, management, analysis and re-use of research data, across borders and scientific disciplines. How? By federating existing scientific data infrastructures, currently dispersed across disciplines and Member States. In practice, what it is depends on the stakeholder. To European Research Infrastructures it’s a coordinated mission to organise and exchange their data, metadata, software and services to be FAIR – Findable, Accessible, Interoperable, Reusable – and to use e-Infrastructures, either EU or commercial. To EU e-Infrastructures offering data storage and cloud services, it’s a funding mission to integrate their services, policies and organisational structures, and to be used by the Research Infrastructures. To agencies it’s a means to promote Open Science, standardisation, cross-disciplinary research and coordinated investment with a dream of a “one stop shop” for researchers. And for Libraries?
ICOS: Integrated Carbon Observation System Open data to open our eyes to clim...Blue BRIDGE
Presentation by Harry Lankreijer, ICOS-Carbon Portal, Lund University, Sweden.
ICOS is a pan-European research infrastructure (RI) for observing and understanding the greenhouse gas (GHG) balance of Europe and its adjacent regions. The major task of ICOS is to collect and make available in a transparent manner, the high-quality observational data from its state-of-the-art measurement stations. These ICOS data – from atmosphere, ecosystem and ocean stations – will contribute to research aiming to describe and understand the present state of the global carbon cycle. The Carbon Portal will be the virtual data center that present the data products and make it available. This presentation will briefly present the work of ICOS and the Carbon Portal towards open data with FAIR principles. ICOS has an open data policy with free use, requesting the user to give appropriate credit (Creative Commons Attribution 4.0 ). The Carbon Portal is developing a data catalogue using an ontology based on a semantic metadata description. This will make it possible to integrate ICOS observations with data from other RI’s as well with data of global networks. For integration, the Carbon Portal is actively following the developments of international standards for eg. metadata and data citation.
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...Sérgio Sacani
Since volcanic activity was first discovered on Io from Voyager images in 1979, changes
on Io’s surface have been monitored from both spacecraft and ground-based telescopes.
Here, we present the highest spatial resolution images of Io ever obtained from a groundbased telescope. These images, acquired by the SHARK-VIS instrument on the Large
Binocular Telescope, show evidence of a major resurfacing event on Io’s trailing hemisphere. When compared to the most recent spacecraft images, the SHARK-VIS images
show that a plume deposit from a powerful eruption at Pillan Patera has covered part
of the long-lived Pele plume deposit. Although this type of resurfacing event may be common on Io, few have been detected due to the rarity of spacecraft visits and the previously low spatial resolution available from Earth-based telescopes. The SHARK-VIS instrument ushers in a new era of high resolution imaging of Io’s surface using adaptive
optics at visible wavelengths.
Governance and Sustainability of EOSC: ambitions, challenges and opportunitiesEOSCpilot .eu
This presentation was held at the 1st EOSC Stakeholder Forum 28-29/11/2017 in Brussels.
For more information on the 1st EOSC Stakeholder Forum visit: https://eoscpilot.eu/eosc-stakeholder-forum-shaping-future-eosc
Follow EOSCpilot on Twitter: https://twitter.com/eoscpilot
and LinkedIn: https://uk.linkedin.com/in/eoscpiloteu
European Open Science Cloud architecture future viewJisc
This online European Open Science Cloud (EOSC) event was held on 15 December 2021.
You’ll get information about:
- Developments in the EOSC Association
- The work of the new EOSC Advisory Groups and Task Forces
- What’s happening in some of the EOSC implementation projects
- Ways you can become involved in EOSC
EGI and EUDAT support to the PaNOSC projectEGI Federation
Data transfer & archivingm, and Jupyter on the EGI Federated Cloud at the core of EGI and EUDAT support to Photon and Neutron science in the PaNOSC project
Health and Wellbeing Living Lab Symposium PresentationsVITALISEProject
The Health and Wellbeing Living Lab Symposium is dedicated to showcasing the outcomes of the VITALISE project, which focuses on harmonizing Living Lab services and procedures while recognizing Living Labs as integral Research Infrastructures. Over the past three years, a collaborative effort among Living Labs in Health has actively demonstrated the significance of Living Labs as Research Infrastructures, effectively representing the global Living Lab community. The work undertaken in VITALISE aligns with the overarching vision of Living Labs developed over the last 15 years, manifesting in project results that advance the recognition and quality of harmonized Living Labs.
This project has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 101007990 The symposium's primary objective is to engage in collective reflection with the European Commission and relevant stakeholders and beneficiaries of Research Infrastructures. The aim is to discuss and plan the next steps toward a new era where Research Infrastructures are open and actively involve communities as powerful tools for co-research.
The European Open Science Cloud: just what is it?Carole Goble
Presented at Jisc and CNI leaders conference 2018, 2 July 2018, Oxford, UK (https://www.jisc.ac.uk/events/jisc-and-cni-leaders-conference-02-jul-2018). The European Open Science Cloud. What exactly is it? In principle it is conceived as a virtual environment with open and seamless services for storage, management, analysis and re-use of research data, across borders and scientific disciplines. How? By federating existing scientific data infrastructures, currently dispersed across disciplines and Member States. In practice, what it is depends on the stakeholder. To European Research Infrastructures it’s a coordinated mission to organise and exchange their data, metadata, software and services to be FAIR – Findable, Accessible, Interoperable, Reusable – and to use e-Infrastructures, either EU or commercial. To EU e-Infrastructures offering data storage and cloud services, it’s a funding mission to integrate their services, policies and organisational structures, and to be used by the Research Infrastructures. To agencies it’s a means to promote Open Science, standardisation, cross-disciplinary research and coordinated investment with a dream of a “one stop shop” for researchers. And for Libraries?
ICOS: Integrated Carbon Observation System Open data to open our eyes to clim...Blue BRIDGE
Presentation by Harry Lankreijer, ICOS-Carbon Portal, Lund University, Sweden.
ICOS is a pan-European research infrastructure (RI) for observing and understanding the greenhouse gas (GHG) balance of Europe and its adjacent regions. The major task of ICOS is to collect and make available in a transparent manner, the high-quality observational data from its state-of-the-art measurement stations. These ICOS data – from atmosphere, ecosystem and ocean stations – will contribute to research aiming to describe and understand the present state of the global carbon cycle. The Carbon Portal will be the virtual data center that present the data products and make it available. This presentation will briefly present the work of ICOS and the Carbon Portal towards open data with FAIR principles. ICOS has an open data policy with free use, requesting the user to give appropriate credit (Creative Commons Attribution 4.0 ). The Carbon Portal is developing a data catalogue using an ontology based on a semantic metadata description. This will make it possible to integrate ICOS observations with data from other RI’s as well with data of global networks. For integration, the Carbon Portal is actively following the developments of international standards for eg. metadata and data citation.
Similar to European Research Projects as EOSC Service Providers (20)
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...Sérgio Sacani
Since volcanic activity was first discovered on Io from Voyager images in 1979, changes
on Io’s surface have been monitored from both spacecraft and ground-based telescopes.
Here, we present the highest spatial resolution images of Io ever obtained from a groundbased telescope. These images, acquired by the SHARK-VIS instrument on the Large
Binocular Telescope, show evidence of a major resurfacing event on Io’s trailing hemisphere. When compared to the most recent spacecraft images, the SHARK-VIS images
show that a plume deposit from a powerful eruption at Pillan Patera has covered part
of the long-lived Pele plume deposit. Although this type of resurfacing event may be common on Io, few have been detected due to the rarity of spacecraft visits and the previously low spatial resolution available from Earth-based telescopes. The SHARK-VIS instrument ushers in a new era of high resolution imaging of Io’s surface using adaptive
optics at visible wavelengths.
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...Scintica Instrumentation
Intravital microscopy (IVM) is a powerful tool utilized to study cellular behavior over time and space in vivo. Much of our understanding of cell biology has been accomplished using various in vitro and ex vivo methods; however, these studies do not necessarily reflect the natural dynamics of biological processes. Unlike traditional cell culture or fixed tissue imaging, IVM allows for the ultra-fast high-resolution imaging of cellular processes over time and space and were studied in its natural environment. Real-time visualization of biological processes in the context of an intact organism helps maintain physiological relevance and provide insights into the progression of disease, response to treatments or developmental processes.
In this webinar we give an overview of advanced applications of the IVM system in preclinical research. IVIM technology is a provider of all-in-one intravital microscopy systems and solutions optimized for in vivo imaging of live animal models at sub-micron resolution. The system’s unique features and user-friendly software enables researchers to probe fast dynamic biological processes such as immune cell tracking, cell-cell interaction as well as vascularization and tumor metastasis with exceptional detail. This webinar will also give an overview of IVM being utilized in drug development, offering a view into the intricate interaction between drugs/nanoparticles and tissues in vivo and allows for the evaluation of therapeutic intervention in a variety of tissues and organs. This interdisciplinary collaboration continues to drive the advancements of novel therapeutic strategies.
Professional air quality monitoring systems provide immediate, on-site data for analysis, compliance, and decision-making.
Monitor common gases, weather parameters, particulates.
Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
Spectroscopy is a branch of science dealing the study of interaction of electromagnetic radiation with matter.
Ultraviolet-visible spectroscopy refers to absorption spectroscopy or reflect spectroscopy in the UV-VIS spectral region.
Ultraviolet-visible spectroscopy is an analytical method that can measure the amount of light received by the analyte.
A brief information about the SCOP protein database used in bioinformatics.
The Structural Classification of Proteins (SCOP) database is a comprehensive and authoritative resource for the structural and evolutionary relationships of proteins. It provides a detailed and curated classification of protein structures, grouping them into families, superfamilies, and folds based on their structural and sequence similarities.
Richard's entangled aventures in wonderlandRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
Multi-source connectivity as the driver of solar wind variability in the heli...Sérgio Sacani
The ambient solar wind that flls the heliosphere originates from multiple
sources in the solar corona and is highly structured. It is often described
as high-speed, relatively homogeneous, plasma streams from coronal
holes and slow-speed, highly variable, streams whose source regions are
under debate. A key goal of ESA/NASA’s Solar Orbiter mission is to identify
solar wind sources and understand what drives the complexity seen in the
heliosphere. By combining magnetic feld modelling and spectroscopic
techniques with high-resolution observations and measurements, we show
that the solar wind variability detected in situ by Solar Orbiter in March
2022 is driven by spatio-temporal changes in the magnetic connectivity to
multiple sources in the solar atmosphere. The magnetic feld footpoints
connected to the spacecraft moved from the boundaries of a coronal hole
to one active region (12961) and then across to another region (12957). This
is refected in the in situ measurements, which show the transition from fast
to highly Alfvénic then to slow solar wind that is disrupted by the arrival of
a coronal mass ejection. Our results describe solar wind variability at 0.5 au
but are applicable to near-Earth observatories.
Deep Behavioral Phenotyping in Systems Neuroscience for Functional Atlasing a...Ana Luísa Pinho
Functional Magnetic Resonance Imaging (fMRI) provides means to characterize brain activations in response to behavior. However, cognitive neuroscience has been limited to group-level effects referring to the performance of specific tasks. To obtain the functional profile of elementary cognitive mechanisms, the combination of brain responses to many tasks is required. Yet, to date, both structural atlases and parcellation-based activations do not fully account for cognitive function and still present several limitations. Further, they do not adapt overall to individual characteristics. In this talk, I will give an account of deep-behavioral phenotyping strategies, namely data-driven methods in large task-fMRI datasets, to optimize functional brain-data collection and improve inference of effects-of-interest related to mental processes. Key to this approach is the employment of fast multi-functional paradigms rich on features that can be well parametrized and, consequently, facilitate the creation of psycho-physiological constructs to be modelled with imaging data. Particular emphasis will be given to music stimuli when studying high-order cognitive mechanisms, due to their ecological nature and quality to enable complex behavior compounded by discrete entities. I will also discuss how deep-behavioral phenotyping and individualized models applied to neuroimaging data can better account for the subject-specific organization of domain-general cognitive systems in the human brain. Finally, the accumulation of functional brain signatures brings the possibility to clarify relationships among tasks and create a univocal link between brain systems and mental functions through: (1) the development of ontologies proposing an organization of cognitive processes; and (2) brain-network taxonomies describing functional specialization. To this end, tools to improve commensurability in cognitive science are necessary, such as public repositories, ontology-based platforms and automated meta-analysis tools. I will thus discuss some brain-atlasing resources currently under development, and their applicability in cognitive as well as clinical neuroscience.
Deep Behavioral Phenotyping in Systems Neuroscience for Functional Atlasing a...
European Research Projects as EOSC Service Providers
1. The EOSC Future, C-SCALE, DICE, EGI-ACE, OpenAIRE-Nexus, Reliance and ARCHIVER projects are funded by the
European Union Horizon Programme calls INFRAEOSC-03-2020 and INFRAEOSC-07-2020 and H2020-ICT-2018-20
with
European Research Projects as
EOSC Service Providers
Pedro Principe (University of Minho / OpenAIRE)
Alexandre Bonvin (University of Utrecht)
Susanna Assunta Sansone (University of Oxford)
2. Agenda
1. 11.00-11.10- Introduction - Pedro Principe (University of Minho)
1. 11.10-11.15- HADDOCK Use Case -
Alexandre Bonvin (University of Utrecht)
1. 11.15-11.20 - FAIRsharing Use Case -
Susanna-Assunta Sansone (University of Oxford)
1. 11.20-11.45 - Q&A lead by Katrien Witpas (Arctik & EOSC Future)
3. Research Project as EOSC service providers (1 / 3)
SERVICES
Compute Resources, Data
management services, Virtual
Research Environments, Data
Analysis tools…
RESEARCH PRODUCTS
Publications, Datasets, Software,
other research outputs…
+ Training tools (resources & materials)
What Research Projects can offer to EOSC
4. Research Project as EOSC service providers (2 / 3)
Why Research projects should become an EOSC provider
• Increase visibility of research resources,
content and services.
• Improve discoverability of the project
research outcomes.
• Sharing resources beyond community
boundaries.
• Reporting scientific production to funders
(e.g. EC) and scholarly communication
services.
• Direct access to Data and services
• Contribute & access training materials,
helpdesk service and OS metrics.
5. Research Project as EOSC service providers (3 / 3)
★ Provider (of the service as outcome of a project)
fulfilling necessary info in the Provider Profile.
★ Service (offered by a Provider) available to
customers in Europe with sufficient maturity
(>=TRL8)
★ Service targeted to EOSC communities and to
build on/leverage EOSC capability
★ Service with a completed profile with basic info
of the resource & policies, not forgetting the
helpdesk function and the training materials.
For onboarding of the research project resource (service/tool…)
Tip: do not forget to integrate the onboarding features into the research project exploitation or sustainability plan.
6. The EOSC Future, C-SCALE, DICE, EGI-ACE, OpenAIRE-Nexus, Reliance and ARCHIVER projects are funded by the
European Union Horizon Programme calls INFRAEOSC-03-2020 and INFRAEOSC-07-2020 and H2020-ICT-2018-20
with
European Research Projects as
EOSC Service Providers
HADDOCK/WeNMR Use Case
Alexandre Bonvin (University of Utrecht)
7. Domain: life sciences / structural biology
Understand life at a molecular level
Main use cases:
• Disease-causing mutations
• Engineer better molecules for material, health or
food applications
• Obtain a starting point for drug design to combat
disease
10. European Open Science Cloud
CC
Under EGI-Engage
How did we get there?
The e-Infrastructure landscape over the years
11. Why registering in EOSC?
▪ The WeNMR services have been in production since >10 years
under various projects (eNMR, WeNMR, West-Life, EOSC-Hub,
EGI-ACE)
▪ Thematic services under EOSC
▪ Access to resources formalized via EGI through a SLA agreement
valid until 06/2023
▪ 50+ million CPU hours (opportunistic access)
▪ 500+ cloud CPU cores
▪ ~60 TB storage
12. • > 28000 registered users
• > 425000 served runs since
June 2008
• > 55% on EOSC/EGI HTC
resources
De Vries et al. Nature Prot. 2010
Van Zundert et al. J.Mol.Biol. 2016
https://wenmr.science.uu.nl
17. In summary
▪ A long history of providing services to a worldwide user community
▪A long history of using EU e-Infrastructure (HTC)
▪WeNMR well-established thematic service provider
▪Natural transition into EOSC
▪Main benefits:
▪ Ensuring access to computational resources
▪ Strong network that helps sustainability (e.g. via EU projects)
18. The EOSC Future, C-SCALE, DICE, EGI-ACE, OpenAIRE-Nexus, Reliance and ARCHIVER projects are funded by the
European Union Horizon Programme calls INFRAEOSC-03-2020 and INFRAEOSC-07-2020 and H2020-ICT-2018-20
with
European Research Projects as
EOSC Service Providers
FAIRsharing Use Case
Susanna-Assunta Sansone (University of Oxford)
20. It provides curated, community-vetted descriptions and relationship graphs
of standards, databases and policies in all disciplines
An informative and educational resource
Identifiers
Terminologies Guidelines
Formats
COMMUNITY STANDARDS
POLICIES
by funders, journals
and other organizations
DATABASES
including repositories
and knowledgebases
21. Guides consumers to discover, select and use these resources with confidence
Helps producers to make their resources more visible, more widely adopted and cited
Promoting databases, standards, policies
Total of
over 3620
resources
(April 2022)
repositories
standards
policies
22. EOSC category:
generic, all
disciplines
Classification of standards, repositories and
policies is powered by our open
Subject Ontology of 436 terms
https://fairsharing.org/browse/subject
https://github.com/FAIRsharing/subject-ontology
24. Users, adopters and collaborators include:
https://fairsharing.org/communities
Why registering in EOSC?
An endorsed output of the
FAIRsharing WG (since 2015):
A WG (since 2015) in:
A recommended resource in EOSC reports
Users from all stakeholder groups
Researchers Developers and curators Journal publishers
Societies and Alliances
Librarians and Trainers Funders
A natural step, because FAIRsharing is already an element of the EOSC ecosystem
25. Contributing to EOSC and its knowledge graphs
Working with EOSC clusters to
curate the descriptions and
visualize the relations of their
databases and the data/metadata
standards they implement
(as well as cross-walks)
=> “FAIR profiles” Collection URL: fairsharing.org/graph/3515;
each record has a DOI
Collection URL: fairsharing.org/graph/3513;
each record has a DOI
26. Findability
Sitemap.xml, JSON
Markup with Schema.org for
search indexes
DOI unique persistent
identifiers for each record
ORCID for author credit and
authentication
Accessibility
read/write REST API
read OAI-PMH
Interoperability
JSON markup
Standardized semantics
Cross-links to or import from
records in other registries
ROR for organizations (ongoing)
FundRef for funders (ongoing)
Reusability
CC BY 4.0 license
JSON export
Following EOSC’s FAIRness & FAIR enablement
27. In summary
○ Launched in 2011, FAIRsharing has also matured under EOSC, working with and for many communities
■ it is part of EOSC projects, working with the clusters, and it is de facto element of its ecosystem
○ The FAIRsharing onboarding process in the EOSC Portal:
■ first discussion Nov 2018; the process was evolving; first release in Dec 2019; updates made in 2021
○ For FAIRsharing being in the EOSC Portal is
■ a natural step: a resource can never be visible and discoverable enough!
■ a way to identify how our content (standards, databases, policies) can contribute to building the Portal
● EOSC Research Product Catalog, via our existing collaboration with OpenAIRE
● EOSC Interoperability Registry, via EOSC Future
○ Prospective benefits:
■ More users for FAIRsharing
■ More and new use of its content by other services
■ More collaborative activities
28. Q&A
1. What will I obtain by registering? Triggers & benefits to onboard
2. What type of resource can be onboarded?
3. How can we onboard end-users to our services via the EOSC Portal?
4. How can we measure impact?