Digitizing  Engelmann’s Legacy: Chris Freeland Director, Center for Biodiversity Informatics Missouri Botanical Garden Mapping Plant Specimens  that Document the  Great American Frontier ESRI Education User Conference  –  July 13, 2010 – San Diego, CA http://www.tropicos.org/Project/Engelmann
Project objectives Select, database & image 8,000 herbarium specimens from pioneering expeditions into the American frontier Digitize 100 volumes of field literature Integrate geospatial analysis  tools into Tropicos ( http://www.tropicos.org ) Make all data openly available at  http://www.tropicos.org/project/engelmann Agave wislizenii  Engelm.
http://www.mobot.org MOBOT:  Now
Founded by Henry Shaw  Opened to the public in 1859 Public display + education +  science MOBOT:  Then
MOBOT Science: Now
MOBOT Science: Then George Engelmann Asa Gray Wm. Jackson Hooker
George Engelmann   (1809 – 1884) Physician & amateur botanist Founder of St. Louis Academy of Sciences Founding member of National Academy of Sciences Thanks, Wikipedia!  http://en.wikipedia.org/wiki/George_Engelmann
US botanical exploration post-Lewis & Clark St. Louis:  Gateway to the West ? X Engelmann more … Josiah  Gregg Freidrich Wislizenus Ferdinand Lindheimer
Heuchera sanguinea  Engelm. Plant specimens  document occurrence Collection Information Collectors: Wislizenus Collection Number: 210 Collection Date: 06 October 1846 Location: Mexico, Chihuahua Elevation: 7,000 ft Description: Crimson flower Locality: Mountains, rocks, at Llanos near Cosiquiriachi.
Data origin & annotation over time ^ 2.Herbarium label: synthesized data < 1.Field label: origin of data ^ 3.Annotation: locality 4.Annotation: revision >
Data Storage: Tropicos.org http://www.tropicos.org/Specimen/1700971
Tropicos :  http://www.tropicos.org MOBOT’s botanical information system 3.8 million specimen records 1.2 million plant names 98,000 collectors / authors 140,000 images Maps via  ESRI tools  &   other technologies… ArcIMS in 2000, just recently taken offline ArcGIS Server 9.3 & JavaScript API in 2009-2010
http://www.tropicos.org/project/engelmann
http://www.tropicos.org/project/engelmann
 
http://www.tropicos.org/project/engelmann
 
Geocoding legacy collections = hard, skilled work < Geocode?  Read??
Field notebooks & historic printed literature can help http://www.biodiversitylibrary.org/item/91553
Neat-o! But…why is this important?? First documented occurrence of plant species in the American frontier Westward expansion brought invasive plants, habitat loss, other pressures on native plants Base data for secondary analyses Can do things with the data after “unlocking” them from physical storage American scientific & cultural heritage These specimens represent:
Heuchera sanguinea  = Coral bells Common Name: coral bells
Zone: 3 to 9 
Plant Type: Herbaceous perennial
Family: Saxifragaceae
Native Range: Western United States
Height: 1 to 1.5 feet
Acknowledgements ESRI Institute of Museum & Library Services Tropicos Development team:   Jay Paige, Heather Stimmel, Craig Geil MOBOT Herbarium staff MOBOT Library & Archives staff Botanists, scientists, students, explorers And of course, George Engelmann!
Links & Resources Engelmann Project:  http://www.tropicos.org/project/engelmann Tropicos:  http://www.tropicos.org Biodiversity Heritage Library: http://www.biodiversitylibrary.org Missouri Botanical Garden: http://www.mobot.org MOBOT Images: http://www.mobot.org/mobot/archives http://www.flickr.com/photos/mbgarchives
Thanks! Questions? Chris Freeland Director, Center for Biodiversity Informatics Missouri Botanical Garden Email:  [email_address] Twitter:  @chrisfreeland Blog / info:  chrisfreeland.com Flickr:  http://flickr.com/photos/chrisfreeland/ http://www.tropicos.org/Project/Engelmann

Digitizing Engelmann's Legacy

  • 1.
    Digitizing Engelmann’sLegacy: Chris Freeland Director, Center for Biodiversity Informatics Missouri Botanical Garden Mapping Plant Specimens that Document the Great American Frontier ESRI Education User Conference – July 13, 2010 – San Diego, CA http://www.tropicos.org/Project/Engelmann
  • 2.
    Project objectives Select,database & image 8,000 herbarium specimens from pioneering expeditions into the American frontier Digitize 100 volumes of field literature Integrate geospatial analysis tools into Tropicos ( http://www.tropicos.org ) Make all data openly available at http://www.tropicos.org/project/engelmann Agave wislizenii Engelm.
  • 3.
  • 4.
    Founded by HenryShaw Opened to the public in 1859 Public display + education + science MOBOT: Then
  • 5.
  • 6.
    MOBOT Science: ThenGeorge Engelmann Asa Gray Wm. Jackson Hooker
  • 7.
    George Engelmann (1809 – 1884) Physician & amateur botanist Founder of St. Louis Academy of Sciences Founding member of National Academy of Sciences Thanks, Wikipedia! http://en.wikipedia.org/wiki/George_Engelmann
  • 8.
    US botanical explorationpost-Lewis & Clark St. Louis: Gateway to the West ? X Engelmann more … Josiah Gregg Freidrich Wislizenus Ferdinand Lindheimer
  • 9.
    Heuchera sanguinea Engelm. Plant specimens document occurrence Collection Information Collectors: Wislizenus Collection Number: 210 Collection Date: 06 October 1846 Location: Mexico, Chihuahua Elevation: 7,000 ft Description: Crimson flower Locality: Mountains, rocks, at Llanos near Cosiquiriachi.
  • 10.
    Data origin &annotation over time ^ 2.Herbarium label: synthesized data < 1.Field label: origin of data ^ 3.Annotation: locality 4.Annotation: revision >
  • 11.
    Data Storage: Tropicos.orghttp://www.tropicos.org/Specimen/1700971
  • 12.
    Tropicos : http://www.tropicos.org MOBOT’s botanical information system 3.8 million specimen records 1.2 million plant names 98,000 collectors / authors 140,000 images Maps via ESRI tools & other technologies… ArcIMS in 2000, just recently taken offline ArcGIS Server 9.3 & JavaScript API in 2009-2010
  • 13.
  • 14.
  • 15.
  • 16.
  • 17.
  • 18.
    Geocoding legacy collections= hard, skilled work < Geocode? Read??
  • 19.
    Field notebooks &historic printed literature can help http://www.biodiversitylibrary.org/item/91553
  • 20.
    Neat-o! But…why isthis important?? First documented occurrence of plant species in the American frontier Westward expansion brought invasive plants, habitat loss, other pressures on native plants Base data for secondary analyses Can do things with the data after “unlocking” them from physical storage American scientific & cultural heritage These specimens represent:
  • 21.
    Heuchera sanguinea = Coral bells Common Name: coral bells
Zone: 3 to 9 
Plant Type: Herbaceous perennial
Family: Saxifragaceae
Native Range: Western United States
Height: 1 to 1.5 feet
  • 22.
    Acknowledgements ESRI Instituteof Museum & Library Services Tropicos Development team: Jay Paige, Heather Stimmel, Craig Geil MOBOT Herbarium staff MOBOT Library & Archives staff Botanists, scientists, students, explorers And of course, George Engelmann!
  • 23.
    Links & ResourcesEngelmann Project: http://www.tropicos.org/project/engelmann Tropicos: http://www.tropicos.org Biodiversity Heritage Library: http://www.biodiversitylibrary.org Missouri Botanical Garden: http://www.mobot.org MOBOT Images: http://www.mobot.org/mobot/archives http://www.flickr.com/photos/mbgarchives
  • 24.
    Thanks! Questions? ChrisFreeland Director, Center for Biodiversity Informatics Missouri Botanical Garden Email: [email_address] Twitter: @chrisfreeland Blog / info: chrisfreeland.com Flickr: http://flickr.com/photos/chrisfreeland/ http://www.tropicos.org/Project/Engelmann