GBIF registry (GBRDS), at European Nodes meeting in Alicante, Spain (10 March...Dag Endresen
Regional NODES meeting of Europe 2010. Presentation of the Global Biodiversity Resources Discovery System (GBRDS, under development) for the NODES. How do we the NODES want the GBRDS to look like. What do we the NODES wish/need the GBRDS to be.
http://www.gbif.org/
http://gbrds.gbif.org/
http://code.google.com/p/gbif-registry/
Estonian National Inventory, at the EPGRIS and EURISCO conference (2 Sept 2003)Dag Endresen
Building a National Inventory for the EPGRIS EURISCO final conference in Prague September 2003. Vahur Kukk (Jogeva PBI), Dag Endresen (Nordic Gene Bank).
http://eurisco.ecprgr.org/
EURISCO demo installations of IPT, at GBIF EU Nodes meeting in Alicante (11 M...Dag Endresen
Regional GBIF NODES meeting of Europe in March 2010. Presentation of current activities from the NordGen NODE. Implementations of the GBIF IPT toolkit for genebanks in Europe. Upgrade for selected genebanks from the BioCASE publishing toolkit to the IPT. First step of a scheduled larger implementation planned to start in 2011 as part of the EuroGeneBank application pending EU funding decision. NordGen IPT EURISCO
Genebanks as GBIF data providers, the first experiences, at the TDWG 2004 con...Dag Endresen
Genebanks as GBIF data providers - the first experiences. Helmut Knüpffer and Norbert Biermann (IPK Gatersleben), Dag Endresen (Nordic Gene Bank), Pawel Kolasinski and Wieslaw Podyma (IHAR), Javier de la Torre (BGBM, ENBI). Presented at TDWG 2004 conference in Christchurch, New Zealand, 13 October 2004.
Data Exchange Model Of EPGRIS, seminar at the Vavilov Institute in St Petersb...Dag Endresen
Data exchange model of the EPGRIS project for the EURISCO database. The IV annual workshop on documentation problems in the sphere of plant genetic researches. N.I. Vavilov Institute of Plant Industry, St Petersburg March 2002. Dag Endresen (Nordic Gene Bank).
http://vir.nw.ru/
http://eurisco.ecpgr.org/
Regional Nordic genebank documentation, at the DanBIF seminar in Århus Decemb...Dag Endresen
The Nordic Gene Bank Regional cooperation, for the DanBIF network meeting 9th December 2004, Århus University. Dag Endresen (Nordic Gene Bank). DanBIF is the Danish GBIF node. GBIF is the Global Biodiversity Information Facility, http://gbif.org
Nordic regional genebank documentation, at a meeting of the Nordic Council of...Dag Endresen
Northern Regional Genebank cooperation. CSO-NB8 meeting of the Nordic Council of Ministers in Vilnius Lithuania, 29th April 2005. Dag Endresen (Nordic Gene Bank).
Darwin Core extension for germplasm (11th December 2013)Dag Endresen
Presentation on the Darwin Core germplasm extension for the "1st International e-Conference on Germplasm Data Interoperability: Session 2", 11th December 2013 (https://sites.google.com/site/germplasminteroperability/). Publishing germplasm information on plant genetic resources and their traits using the Darwin Core standard and the germplasm extension for genebanks.
GBIF registry (GBRDS), at European Nodes meeting in Alicante, Spain (10 March...Dag Endresen
Regional NODES meeting of Europe 2010. Presentation of the Global Biodiversity Resources Discovery System (GBRDS, under development) for the NODES. How do we the NODES want the GBRDS to look like. What do we the NODES wish/need the GBRDS to be.
http://www.gbif.org/
http://gbrds.gbif.org/
http://code.google.com/p/gbif-registry/
Estonian National Inventory, at the EPGRIS and EURISCO conference (2 Sept 2003)Dag Endresen
Building a National Inventory for the EPGRIS EURISCO final conference in Prague September 2003. Vahur Kukk (Jogeva PBI), Dag Endresen (Nordic Gene Bank).
http://eurisco.ecprgr.org/
EURISCO demo installations of IPT, at GBIF EU Nodes meeting in Alicante (11 M...Dag Endresen
Regional GBIF NODES meeting of Europe in March 2010. Presentation of current activities from the NordGen NODE. Implementations of the GBIF IPT toolkit for genebanks in Europe. Upgrade for selected genebanks from the BioCASE publishing toolkit to the IPT. First step of a scheduled larger implementation planned to start in 2011 as part of the EuroGeneBank application pending EU funding decision. NordGen IPT EURISCO
Genebanks as GBIF data providers, the first experiences, at the TDWG 2004 con...Dag Endresen
Genebanks as GBIF data providers - the first experiences. Helmut Knüpffer and Norbert Biermann (IPK Gatersleben), Dag Endresen (Nordic Gene Bank), Pawel Kolasinski and Wieslaw Podyma (IHAR), Javier de la Torre (BGBM, ENBI). Presented at TDWG 2004 conference in Christchurch, New Zealand, 13 October 2004.
Data Exchange Model Of EPGRIS, seminar at the Vavilov Institute in St Petersb...Dag Endresen
Data exchange model of the EPGRIS project for the EURISCO database. The IV annual workshop on documentation problems in the sphere of plant genetic researches. N.I. Vavilov Institute of Plant Industry, St Petersburg March 2002. Dag Endresen (Nordic Gene Bank).
http://vir.nw.ru/
http://eurisco.ecpgr.org/
Regional Nordic genebank documentation, at the DanBIF seminar in Århus Decemb...Dag Endresen
The Nordic Gene Bank Regional cooperation, for the DanBIF network meeting 9th December 2004, Århus University. Dag Endresen (Nordic Gene Bank). DanBIF is the Danish GBIF node. GBIF is the Global Biodiversity Information Facility, http://gbif.org
Nordic regional genebank documentation, at a meeting of the Nordic Council of...Dag Endresen
Northern Regional Genebank cooperation. CSO-NB8 meeting of the Nordic Council of Ministers in Vilnius Lithuania, 29th April 2005. Dag Endresen (Nordic Gene Bank).
Darwin Core extension for germplasm (11th December 2013)Dag Endresen
Presentation on the Darwin Core germplasm extension for the "1st International e-Conference on Germplasm Data Interoperability: Session 2", 11th December 2013 (https://sites.google.com/site/germplasminteroperability/). Publishing germplasm information on plant genetic resources and their traits using the Darwin Core standard and the germplasm extension for genebanks.
Prototype germplasm data portal (2006)Dag Endresen
Prototype Germplasm Data Portal, predecessor for the ALIS-Global of the GIGA project. Presentation for the Nordic Gene Bank board meeting on 4th December 2006.
Trait Mining, prediction of agricultural traits in plant genetic resources with ecological parameters. Focused Identification of Germplasm Strategy (FIGS). For the Vavilov seminars at the IPK Gatersleben 13th June 2007. Dag Endresen, Michael Mackay, Kenneth Street.
Data publication meeting at the Department of Ecology and Natural Resource Management, Norwegian University of Life Sciences (NMBU), GBIF Norway and the Norwegian Biodiversity Information Centre (Artsdatabanken).
GBIF-Norway node story lightning talk at GB26 in Leiden, October 2019Dag Endresen
The Nodes training at the start of the Nodes meeting focussed on Nodes strategies, administration, and governance tools. Some of the nodes stories were presented at the Global Nodes Meeting. Norway has an operational GBIF Node providing nationally important data pathways that are very well integrated into national information systems. However, there is not yet any solution in place for funding after 2019. In less than 3 months the node might be left without any node budget. Unfortunately, this is a situation far too many of the GBIF Nodes recognize alarmingly well - if they even have any appropriate node budget at all.
GBIF BIFA mentoring, Day 4b Event core, July 2016Dag Endresen
GBIF BIFA mentoring in Los Banos, Philippines for the South-East Asian ASEAN Biodiversity Heritage Parks. With Dr. Yu-Huang Wang, Dr. Po-Jen Chiang, and Guan-Shuo Mai from TaiBIF the GBIF node of Taiwan (Chinese Tapei); and the Biodiversity Informatics team at ASEAN Centre For Biodiversity. http://www.gbif.no/events/2016/gbif-bifa-mentoring.html
Intro to GBIF: Infrastructures and Platforms for Environmental Crowd Sensing ...Kyle Copas
Slides presented while representing GBIF—the Global Biodiversity Information Facility (http://gbif.org)—at 'Infrastructures and Platforms for Environmental Crowd Sensing and Big Data' at the European Environment Agency on 9 Sept 2015. The session was part of EnviroInfo and ICT for Sustainability, a three-day conference in Copenhagen hosted by the University of Copenhagen in collaboration with the European Environment Agency.
#HepaticaWeek April 2016, GBIF data publishingDag Endresen
Citizen science species observation reporting and data publishing with the Global Biodiversity Information Facility (GBIF). Video feed available at: https://youtu.be/t22QmFPcvOM?t=34m4s
GBIF BIFA mentoring, Day 5a Data management, July 2016Dag Endresen
GBIF BIFA mentoring in Los Banos, Philippines for the South-East Asian ASEAN Biodiversity Heritage Parks. With Dr. Yu-Huang Wang, Dr. Po-Jen Chiang, and Guan-Shuo Mai from TaiBIF the GBIF node of Taiwan (Chinese Tapei); and the Biodiversity Informatics team at ASEAN Centre For Biodiversity. http://www.gbif.no/events/2016/gbif-bifa-mentoring.html
Credits: EUDAT/OpenAire, December 2015 & May 2016, CC-BY-4.0
* http://www.slideshare.net/EUDAT/eudat-research-data-management
* http://www.slideshare.net/EUDAT/research-data-management-introduction-eudatopen-aire-webinar?ref=https://eudat.eu/events/webinar/research-data-management-an-introductory-webinar-from-openaire-and-eudat
* https://eudat.eu/events/webinar/research-data-management-an-introductory-webinar-from-openaire-and-eudat
* http://www.instantpresenter.com/WebConference/RecordingDefault.aspx?c_psrid=EB57D6888147
Darwin Core extension for genebanks (germplasm), at Kansas University (May 2012)Dag Endresen
The Darwin Core terms can be seen as an extension to the standard Dublin Core metadata terms. The new Darwin Core extension for genebanks declares the additional terms required for describing genebank datasets, and is based on established standards from the plant genetic resources community. The Global Biodiversity Information Facility (GBIF) provides an information infrastructure for biodiversity data including a suite of software tools for data publishing, distributed data access, and the capture of biodiversity data. The Darwin Core extension for genebanks is a key component that provides access for the genebanks and the plant genetic resources community to the GBIF informatics infrastructure including the new toolkits for data exchange.
Introduction to GBIF. GBIF seminar in Bergen. 2016-12-14Dag Endresen
GBIF data publishing seminar at the Department for Biology at the University of Bergen. http://www.gbif.no/events/2016/data-publishing-seminar-in-bergen.html
GBIF data publishing. GBIF seminar in Bergen. 2016-12-14Dag Endresen
GBIF data publishing seminar at the Department for Biology at the University of Bergen. http://www.gbif.no/events/2016/data-publishing-seminar-in-bergen.html
BioDATA capacity enhancement curriculum at GBIF GB26 Global Nodes Meeting in ...Dag Endresen
BioDATA Biodiversity Data for Internationalization in Higher Education is funded by the Norwegian Agency for International Cooperation and Quality Enhancement in Higher Education (DIKU) -- and is based on reusing training materials from the GBIF Biodiversity Information for Development (BID) program funded by the European Commission.
Global Biodiversity Information Facility (GBIF) - 2012Dag Endresen
Presentation of the Global Biodiversity Information Facility (GBIF) and GBIF Norway for the Department of Technical and Scientific Conservation (CONSERV) at the Natural History Museum, University of Oslo. Tøyen, Oslo, 7 November 2012.
EURISCO and GBIF, at the European genbank network meeting (Bonn, April 2004)Dag Endresen
Potential relationship and collaboration between EURISCO and GBIF - a distributed network of databases for the ECP/GR D&I network meeting at ZADI Bonn Germany 11th April 2005. Dag Endresen (Nordic Gene Bank). GBIF is a Global Biodiversity Information Facility for free and open access to biodiversity data.
Prototype germplasm data portal (2006)Dag Endresen
Prototype Germplasm Data Portal, predecessor for the ALIS-Global of the GIGA project. Presentation for the Nordic Gene Bank board meeting on 4th December 2006.
Trait Mining, prediction of agricultural traits in plant genetic resources with ecological parameters. Focused Identification of Germplasm Strategy (FIGS). For the Vavilov seminars at the IPK Gatersleben 13th June 2007. Dag Endresen, Michael Mackay, Kenneth Street.
Data publication meeting at the Department of Ecology and Natural Resource Management, Norwegian University of Life Sciences (NMBU), GBIF Norway and the Norwegian Biodiversity Information Centre (Artsdatabanken).
GBIF-Norway node story lightning talk at GB26 in Leiden, October 2019Dag Endresen
The Nodes training at the start of the Nodes meeting focussed on Nodes strategies, administration, and governance tools. Some of the nodes stories were presented at the Global Nodes Meeting. Norway has an operational GBIF Node providing nationally important data pathways that are very well integrated into national information systems. However, there is not yet any solution in place for funding after 2019. In less than 3 months the node might be left without any node budget. Unfortunately, this is a situation far too many of the GBIF Nodes recognize alarmingly well - if they even have any appropriate node budget at all.
GBIF BIFA mentoring, Day 4b Event core, July 2016Dag Endresen
GBIF BIFA mentoring in Los Banos, Philippines for the South-East Asian ASEAN Biodiversity Heritage Parks. With Dr. Yu-Huang Wang, Dr. Po-Jen Chiang, and Guan-Shuo Mai from TaiBIF the GBIF node of Taiwan (Chinese Tapei); and the Biodiversity Informatics team at ASEAN Centre For Biodiversity. http://www.gbif.no/events/2016/gbif-bifa-mentoring.html
Intro to GBIF: Infrastructures and Platforms for Environmental Crowd Sensing ...Kyle Copas
Slides presented while representing GBIF—the Global Biodiversity Information Facility (http://gbif.org)—at 'Infrastructures and Platforms for Environmental Crowd Sensing and Big Data' at the European Environment Agency on 9 Sept 2015. The session was part of EnviroInfo and ICT for Sustainability, a three-day conference in Copenhagen hosted by the University of Copenhagen in collaboration with the European Environment Agency.
#HepaticaWeek April 2016, GBIF data publishingDag Endresen
Citizen science species observation reporting and data publishing with the Global Biodiversity Information Facility (GBIF). Video feed available at: https://youtu.be/t22QmFPcvOM?t=34m4s
GBIF BIFA mentoring, Day 5a Data management, July 2016Dag Endresen
GBIF BIFA mentoring in Los Banos, Philippines for the South-East Asian ASEAN Biodiversity Heritage Parks. With Dr. Yu-Huang Wang, Dr. Po-Jen Chiang, and Guan-Shuo Mai from TaiBIF the GBIF node of Taiwan (Chinese Tapei); and the Biodiversity Informatics team at ASEAN Centre For Biodiversity. http://www.gbif.no/events/2016/gbif-bifa-mentoring.html
Credits: EUDAT/OpenAire, December 2015 & May 2016, CC-BY-4.0
* http://www.slideshare.net/EUDAT/eudat-research-data-management
* http://www.slideshare.net/EUDAT/research-data-management-introduction-eudatopen-aire-webinar?ref=https://eudat.eu/events/webinar/research-data-management-an-introductory-webinar-from-openaire-and-eudat
* https://eudat.eu/events/webinar/research-data-management-an-introductory-webinar-from-openaire-and-eudat
* http://www.instantpresenter.com/WebConference/RecordingDefault.aspx?c_psrid=EB57D6888147
Darwin Core extension for genebanks (germplasm), at Kansas University (May 2012)Dag Endresen
The Darwin Core terms can be seen as an extension to the standard Dublin Core metadata terms. The new Darwin Core extension for genebanks declares the additional terms required for describing genebank datasets, and is based on established standards from the plant genetic resources community. The Global Biodiversity Information Facility (GBIF) provides an information infrastructure for biodiversity data including a suite of software tools for data publishing, distributed data access, and the capture of biodiversity data. The Darwin Core extension for genebanks is a key component that provides access for the genebanks and the plant genetic resources community to the GBIF informatics infrastructure including the new toolkits for data exchange.
Introduction to GBIF. GBIF seminar in Bergen. 2016-12-14Dag Endresen
GBIF data publishing seminar at the Department for Biology at the University of Bergen. http://www.gbif.no/events/2016/data-publishing-seminar-in-bergen.html
GBIF data publishing. GBIF seminar in Bergen. 2016-12-14Dag Endresen
GBIF data publishing seminar at the Department for Biology at the University of Bergen. http://www.gbif.no/events/2016/data-publishing-seminar-in-bergen.html
BioDATA capacity enhancement curriculum at GBIF GB26 Global Nodes Meeting in ...Dag Endresen
BioDATA Biodiversity Data for Internationalization in Higher Education is funded by the Norwegian Agency for International Cooperation and Quality Enhancement in Higher Education (DIKU) -- and is based on reusing training materials from the GBIF Biodiversity Information for Development (BID) program funded by the European Commission.
Global Biodiversity Information Facility (GBIF) - 2012Dag Endresen
Presentation of the Global Biodiversity Information Facility (GBIF) and GBIF Norway for the Department of Technical and Scientific Conservation (CONSERV) at the Natural History Museum, University of Oslo. Tøyen, Oslo, 7 November 2012.
EURISCO and GBIF, at the European genbank network meeting (Bonn, April 2004)Dag Endresen
Potential relationship and collaboration between EURISCO and GBIF - a distributed network of databases for the ECP/GR D&I network meeting at ZADI Bonn Germany 11th April 2005. Dag Endresen (Nordic Gene Bank). GBIF is a Global Biodiversity Information Facility for free and open access to biodiversity data.
NGB and NordGen database history (16 Dec 2010)Dag Endresen
The history of the Genebank Information System at the Nordic Gene Bank (1979-2007) and the Nordic Genetic Resource Center (NordGen, 2008-2010). BIRS (1981-1989), dBASE (1989-1994), and SESTO (dBASE, 1995-2001), SESTO (PHP, since 2002).
Crowdsourcing at the Natural History Museum in Oslo (2014-06-01)Dag Endresen
Crowdsourcing portal for transcription of label information from images of the specimens in the natural history collections in Norway, http://gbif.no/transcribe
NGB documentation system at SADC training course 2003 (9 July 2003)Dag Endresen
The Nordic Gene Bank wen pages and documentation system for the SADC summer training course, July 2003. Dag Endresen and Fredrik Ottosson (NGB). SADC is a regional southern African network for conservation of plant genetic resources.
http://www.ngb.se
http://sesto.nordgen.org/
Barley genetic resources Enhancing the practical value in Europe through Eval...enneking
This presentation is a summary of results from the EU GENRES 104 project on barley genetic resources. Lots of pretty maps showing the distribution of special characteristics in barley varieties, barley landraces and wild barley (Hordeum vulgare ssp.spontaneum)
Joint GBIF Biodiversa+ symposium in Helsinki on 2024-04-16Dag Endresen
GBIF Norway contributed to a symposium organized jointly by Biodiversa+ and GBIF, to discuss the requirements for national biodiversity monitoring hubs in the context of proposals for a European Biodiversity Observation Coordination Centre.
EURISCO needs and priorities, at CGIAR ICT-KM Workshop, IPGRI, Rome (2005)Dag Endresen
European genebanks, EURISCO and NGB. Overview of needs and priorities. CGIAR ICT-KM training workshop on information interoperability, 14th June 2005, IPGRI Rome Italy. Dag Endresen (Nordic Gene Bank).
Developing the field of Biodiversity Informatics in South Africa through the ...Fatima Parker-Allie
Presentation looks a developing the field of informatics, and the use and application of Biodiversity data through a showcase example of the use of marine data and the impacts of climate change on fish species under current and future climate scenarios
Towards 2030. Strategy seminar for the Research Section at the UiO Natural History Museum in Oslo on 8-9 November 2018. Strategic directions for GBIF and GBIF.no and the UiO Natural History Museum. Progress towards a long-term permanent GBIF research data infrastructure in Norway and a sustainable and actionable GBIF Node consortium.
Regional Engagement:Towards the Establishment of a Data-Science Platform for ...Fatima Parker-Allie
Presentation conducted at the GBIF Governing Board 19 Meeting in Norway. Presentation focused on the GBIF Africa Network and the establishment of a Data-Science Platform for Africa
Parker allie_Mobilising biodiversity data for science and policy in South Afr...Fatima Parker-Allie
Biodiversity Informatics in South Africa, as in other parts of the world, is a young and dynamic field of science, which translates into an enormous challenge for biodiversity scientists. Understanding mechanisms for information sharing in this landscape has been successful over time. The South African National Biodiversity Institute, houses the GBIF Node, and supports a knowledge-management platform, which makes biodiversity data freely and openly available. The South African Biodiversity Information Facility (SABIF) is a major publisher of biodiversity data, making >11.5 million biodiversity data records available, from a growing network of more than 15 organisations, to the global scientific community. Data standards such as the Darwin Core, and protocols such as TAPIR and the Integrated Publishing Toolkit have been used. Data sharing takes place through both funded and non-funded mechanisms, to initiate digitization activities. A comprehensive policy framework has also been put in place by SANBI, to enable data sharing which takes into account intellectual property rights, citations and sensitive data. The scope of data of types being mobilized is increasing through the Foundational Biodiversity Information Programme with species, specimens, observation, images and molecular data being mobilised, and made accessible. The Information Architecture is evolving to support these data types and to ensure that relevant data can be accessed efficiently in support of science, policy and decision making.
High-level Meeting & Workshop on Environmental and Scientific Open Data for Sustainable Development Goals in Developing Countries. Madagascar, 4-6 December 2017
This presentation is an introduction for the webinar about the installation and set up of the GBIF Integrated Publishing Toolkit (IPT) that was held the 7 Jan 2015.
Modelling Research Expeditions in Wikidata: Best Practice for Standardisation...Dag Endresen
TDWG 2023 Hobart, 2023-10-10.
Sabine von Mering, Paul Jean-Charles Braun, Robert W. N. Cubey, Quentin Groom, Elspeth M Haston, Annika Hendriksen, Rukaya Johaadien, Siobhan Leachman, Luke Marsden, Heimo Rainer, Joaquim Santos, Dag Endresen. https://doi.org/10.3897/biss.7.111427
See also https://www.wikidata.org/wiki/Wikidata:WikiProject_Research_expeditions
Ontologies for biodiversity informatics, UiO DSC June 2023Dag Endresen
GBIF Norway was invited to the UiO Digital Scholar Centre Data (DSC) Managers Network meeting on 2023-06-08 to present how we use biodiversity ontologies. https://www.gbif.no/news/2023/biodiversity-ontologies.html
The UiO Natural History Museum (GBIF Norway) presented the evacuation of the Kherson herbarium in Ukraine at the 2023 annual conference for the Norwegian Association of Archives. Plenary 2023-06-01.
More information at: https://www.gbif.no/news/2023/privatarkivkonferansen.html
Video at: https://www.gbif.no/news/2023/video/2023-06-kherson-herbarium.mp4
Scientific Advisory Committee (SAC) meeting May 2023 for the Global Information System (GLIS) of the Plant Treaty (ITPGRFA) of the United Nations Food and Agriculture Organization (FAO)
BioDT for the UiO Science section meeting 2023-03-24Dag Endresen
Presentation of the Biodiversity Digital Twin (BioDT) project for the University of Oslo (UiO) Natural History Museum (NHMO) Science department on 2023-03-24.
BioDATA final conference in Oslo, November 2022Dag Endresen
BioDATA – Biodiversity data management skills for students (2018-2022). BioDATA is an international project on developing skills in biodiversity data management and data publishing for undergraduate and postgraduate students from Armenia, Belarus, Norway, Tajikistan, and Ukraine. The project is coordinated by the University of Oslo (Norway) and supported by the Global Biodiversity Information Facility (GBIF). The project is funded by the Directorate for Higher Education and Skills (HKDir). The final closing symposium for all partner universities was organized at the University of Oslo Natural History Museum in Oslo from 11th to 12th November 2022.
GBIF data mobilisation for the Nansen Legacy, Tromsø, 2022-09-20Dag Endresen
Nansen Legacy (Arven etter Nansen, AeN) - Marine data publishing workshop. 3-day workshop to publish marine biodiversity data from the AeN project as Darwin Core Archives on September 20-22, 2022. With support from the Norwegian Global Biodiversity Information Facility (GBIF) node, and the Ocean Biodiversity Information System (OBIS, EurOBIS). https://www.gbif.no/events/2022/nansen-legacy-tromso.html
GBIF at Living Norway Open Science Lab 2022-03-03Dag Endresen
Presentation of GBIF at the Living Norway Open Science Lab on 2022-03-03. See program at
https://livingnorway.no/join-the-living-norway-ecological-data-network-through-our-open-science-lab/
https://livingnorway.no/2022/02/10/join-our-open-science-lab/
https://www.gbif.no/events/2022/open-science-lab-1.html
GBIF & GRScicoll, Høstseminar Norges museumsforbunds Seksjon for natur, 2021-...Dag Endresen
Norges museumsforbunds Seksjon for natur og Naturhistorisk museum ønsker velkommen til Høstseminar! Natur i museum – forskning, formidling og samlinger
24. og 25. november 2021
Dag Endresen (GBIF) (20 min foredrag, 10 min spørsmål)
Digitalisering og GBIF. Registering av samlinger i GrSciColl og Wikidata og publisering av samlingsdata i GBIF.
Råd fra GBIF-Norge til datainfrastrukturutvalget i dialogmøte 2021-11-19Dag Endresen
[Råd 1] Norske forskningsdata bør publiseres i henhold til internasjonale data-standarder. Internasjonale data-standarder sikrer interoperabilitet og reelle muligheter for gjenbruk av data. Etablerte data-standarder innenfor et fagområde gir ofte best effekt for realisert gjenbruk, men kan hindre gjenbruk av data i nye og uforutsette tverrfaglige studier og sammenhenger. Norge bør derfor også bidra til tverrfaglig videreutvikling av interoperabilitet på tvers av data-standarder som er i anvendelse innenfor de enkelte fagområder.
[Råd 2] Måloppnåelse for økt deling av forskningsdata blir enklere med effektive insentiver. Vi tror at etablering av forskningsdata som siterbart vitenskapelig produkt slik som DORA (sfdora.org, 2012) og Force11 (force11.org, 2011) beskriver gir viktige retningslinjer som datainfrastrukturutvalget bør forsøke å integrere i nye Norske retningslinjer.
[Råd 3] Metrikk for å måle gjennomslag og innflytelse (impact) av forskning ("tellekanter") bør utvides til å inkludere metrikk for anerkjennelse av datakilde (data-publikasjon, data-sitering) for både forsker og institusjon. Publisering av forskningsdata bør fortrinnsvis utføres gjennom en profesjonell infrastruktur (slik som GBIF) der opphavsmann og de ulike bidragsytere til produksjon, innsamling, tilretteleggelse, håndtering, og bevaring av data kan registreres. Dataset bør tilordnes stabil digital identitet, gjennom løsninger slik som DOI (digital object identifier). Personer bør knyttes til stabil digital identitet gjennom løsninger slik som ORCID (Open Researcher and Contributor ID, orcid.org). Institusjoner bør knyttes til stabil digital identitet gjennom system løsninger slik som ROR (Research Organization Registry, ror.org).
[Råd 4] Etablering av infrastruktur for forskningsdata tar tid og behøver derfor kontinuitet og forutsigbare rammer, mandat, og langsiktig strategisk investering. Effektiv langsiktig investering i felles internasjonale løsninger krever ofte bedre kontinuitet enn det som er mulig innenfor handlingsrommet for basisfinansiering for enkelte forskningsinstitusjoner og universiteter. Samtidig som felles multi-nasjonal investering i fellesløsninger ofte har en betydelig lavere kostnad enn en alternativ mere fragmentert infrastruktur.
GBIF Norge (GBIF.no) er den norske deltagernoden i Global Biodiversity Information Facility (GBIF.org). GBIF er en internasjonal organisasjon som arbeider for fri og åpen tilgang til globalt dekkende informasjon om biologisk mangfold. GBIF ble etablert i 2001 etter en beslutning i OECDs Science Forum i 1999. Norge ble medlem av GBIF i 2004 og den norske deltagernoden, GBIF Norge, ble etablert med sekretariat ved Universitet i Oslo Naturhistorisk Museum i nært samarbeid med Artsdatabanken og med finansiering fra Forskningsrådet. GBIF Norges mandat omfatter nasjonal deltagelse i GBIF med internasjonal publisering av norske artsdata i henhold til internasjonale data-standarder som er forvaltet av GBIF.
Lecture for a course at NTNU, 27th January 2021
CC-BY 4.0 Dag Endresen https://orcid.org/0000-0002-2352-5497
See also http://bit.ly/biodiversityinformatics
https://www.gbif.no/events/2021/lecture-ntnu-gbif.html
Presentation Open Science from the Global Biodiversity Information Facility at the Living Norway colloquium in Trondheim on 12 October 2020.
Slides credit: based on slides created by the GBIF Secretariat Scientific Officer; Biodiversity Open Data Ambassadors [ https://www.gbif.org/article/6dNF1d0tgcI4cmqeoS2sQ4/biodiversity-open-data-ambassadors ]. Video recording available at https://youtu.be/OpvxH6hj9K8?t=5786
CC-BY 4.0 Dag Endresen https://orcid.org/0000-0002-2352-5497
See also http://bit.ly/biodiversityinformatics
Open science curriculum for students, June 2019Dag Endresen
Living Norway seminar on Open Science in Trondheim 12th June 2019.
https://livingnorway.no/2019/04/26/living-norway-seminar-2019/
https://www.gbif.no/events/2019/living-norway-seminar.html
Event core and new datatypes in GBIF - 10th European GBIF Nodes Meeting in Ta...Dag Endresen
Integrating event-core and other new and complex data types (data models) in GBIF. Data types inside Darwin Core not yet supported in GBIF. Introduction for starting the discussions at the 10th European GBIF Nodes Meeting in Tallinn Estonia 15th May 2018. See also: http://bit.ly/gbifEu2018_datatypes | http://bit.ly/gbifEu2018_new_datatypes | DOI: 10.13140/RG.2.2.16667.36641
GBIF/OBIS hackathon in Brussels January 2018Dag Endresen
From 16 to 17 January 2018 biological data experts was meeting in Brussels to exchange experiences and use cases for the (relatively) new Darwin Core Event core and how the standard can be used in Marine and terrestrial contexts. By discussing use cases we aimed at providing guidelines on best practices of this new standard.
See also:
http://www.gbif.no/news/2018/gbif_obis_event_core_workshop.html
http://www.gbif.no/news/2018/documents/2018-01-17_event_core_mof_dwciri.pptx
1. The Nordic Gene Bank documentation system SESTO [2004-09-17 ]
2. SESTO SESTO - The NGB documentation system. The main purpose of the NGB documentation system is management of the material in the NGB seedstore . This includes basic descriptions of the seed samples and their location in the seedstore. Second NGB publish data on the collection to meet the needs of public users. NGB has developed one single web application to meet both these needs. This approach has proven effective, flexible and secure.
3. SESTO, taxon, culton, accson SESTO - The NGB documentation system. Taxon : Biological name for the stored seeds. Culton : Names of cultivars, landraces, breeding material and similar germplasm groups below the taxonomic level. Accession : The stored seeds are referred as accessions and stored as separate samples by their harvest year as batch .
4. SESTO collecting places GIS The location of collecting places are visualized on a map if the longitude and latitude is recorded in the database. SESTO accession detail
5. Pictures Some entries in SESTO have picture illustrations. Pictures are registered in the online NGB picture archive.
6. ” The evaluation data analyzer”. A statistical summary is presented for evaluation and characterization data.
7. Login The NGB staff and other trusted users may log in with a personal username and password. Each user is given individual rights to view or edit data.
10. Nordic collaboration The main network for NGBs Nordic regional collaboration is the NGB crop working groups with experts from all the Nordic countries. The new Nordic national programmes on biodiversity have also established a close collaboration with NGB. One of the priorities often presented by the national programmes is the development of a common Nordic information platform . This activity is very similar to the work NGB has started to plan on a joint genebank documentation system together with the Baltic countries.
11. Regional cooperation Regional collaboration in the near area The Baltic region and Russia NGB has hosted training in genebank documentation as well as more technical training workshops on database and server administration. Plans for future IT cooperation include a regional online documentation system. Three alternatives are possible. 1) To host the application from NGB. 2) To support establishment of a similar national system as sesto in the individual countries. 3) To support the development of better data exchange routines built on local more diverse national documentation systems. Alternative 1 is partly implemented as a demonstration for Estonia and Latvia. Finance, further technical development and formal agreements of the commitments of the participants is necessary. Our Baltic partners have indicated a great interest in further development of this solution. Nikolai I. Vavilov
12. International cooperation International activities NGB has an extensive international cooperation on genebank documentation. The main focus and activity is transfer of knowledge and technology. Southern Africa, SADC region. NGB has hosted training in computer skills for the SADC students at the genebank management summer course. (10 to 15 SADC students have visited NGB every year for the last 13 years.) East Africa NGB contributes as technical consultant for the Eastern Africa Plant Genetic Resources Network (EAPGREN). Support on development of documentation solutions are planned to start in 2005. Europe NGB is a central participant in the development of genebank documentation strategies and solutions for Europe. Most of the work is organized through the ECP/GR network. NGB was a partner in the EPGRIS project (2001-2003) financed from EU.
13. EURISCO GBIF International documentation networks Cooperation on joining data on biological databases has received increased interest. EURISCO NGB participated the EPGRIS project (2000-2003) which resulted in the EURISCO database. This is an online searchable database of passport data (FAIO/IPGRI Multi-crop passport descriptors) from all major genebanks of Europe. The database is managed by IPGRI on behalf of the European plant genetic resources community. GBIF NGB joined GBIF in 2004. The mission of the Global Biodiversity Information Facility (GBIF) is to make the world's primary data on biodiversity freely and universally available via the Internet.