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Rare Disease Research in
Canada: Building on Success
Paul Lasko, Scientific Director, CIHR Institute of
Genetics
Rare disease research has been funded through a
larger Personalized Health Initiative
Personalized Medicine Initiative
•  Enhance	
  health	
  outcomes	
  through	
  
pa1ent	
  stra1fica1on	
  approaches	
  by	
  
integra1ng	
  evidence-­‐based	
  medicine	
  and	
  
precision	
  diagnos1cs	
  into	
  clinical	
  prac1ce	
  
•  $240M	
  ($85M	
  from	
  CIHR)	
  
•  110	
  compe11on	
  and	
  applica1on	
  
partners,	
  including	
  Genome	
  Canada	
  
2	
  
•  Drive	
  evidence-­‐based	
  
implementa1on	
  of	
  PH	
  that	
  
will	
  iden1fy	
  solu1ons	
  that	
  
can	
  contribute	
  to	
  more	
  
cost-­‐effec1ve	
  and	
  
sustainable	
  healthcare	
  
•  CIHR’s	
  investments	
  
currently	
  planned	
  :	
  $45M	
  
•  Alignment	
  with	
  IC	
  PerMed	
  
Personalized Health Initiative
2012	
   2016	
  
eHealth Innovation Initiative
•  Enhance	
  health	
  outcomes	
  and	
  health	
  
care	
  delivery,	
  through	
  the	
  
implementa1on,	
  evalua1on	
  and	
  scale-­‐
up	
  of	
  eHealth	
  innova1ons	
  
•  $34.4M	
  ($16.2M	
  from	
  CIHR)	
  
•  77	
  applica1on	
  partners	
  
Canadian Success Stories
3	
  
•  Recruited	
  over	
  3000	
  pa1ents	
  and	
  family	
  
members	
  to	
  study;	
  
•  Studied	
  637	
  different	
  rare	
  diseases;	
  
•  Have	
  provided	
  a	
  diagnosis	
  to	
  over	
  1000	
  
pa1ents;	
  
•  Have	
  iden1fied	
  85	
  novel	
  rare	
  disease	
  
genes;	
  
•  Are	
  developing	
  three	
  experimental	
  
therapies;	
  
•  Contribute	
  to	
  interna1onal	
  data	
  sharing	
  
standards.	
  
•  Interna1onal	
  consor1um	
  grouping	
  
samples	
  and	
  exper1se	
  on	
  high	
  grade	
  
astrocytomas	
  
•  Iden1fied	
  recurrent	
  driver	
  muta1ons	
  
affec1ng	
  DNA	
  structure,	
  now	
  part	
  of	
  
WHO	
  test	
  recommenda1ons	
  
•  Developed	
  an	
  oncopanel	
  now	
  used	
  in	
  
clinical	
  trials	
  and	
  CLIA	
  cer1fied	
  
	
  
GeneX	
  
$25K	
  
$2.3	
  M	
  Catalyst	
  Grant	
  
Network Catalyst Grant:
“Canadian Rare Diseases : Models & Mechanisms Network”
Objectives:
1.  Enable collaboration between clinician scientists (rare disease gene discovery)
and basic scientists (expertise in the the cognate gene’s function)
2.  Determine the functional consequences of the mutations found (validate protein
loss of function or altered function) coincident with discovery
3.  Provide seed funding ($25K) to the collaborating scientists to obtain functional
data for publication or as preliminary results for a larger grant application
4.  Develop an information portal for resources, databases, technologies, core
facilitites, etc. available in Canada
For more information see Hieter and Boycott (2014) Genetics
198: 443-445.
Clinical Gene
Discovery
Applicants
Model Organism
Investigators
Register to
Join the
Network
Generate Functional
Data
Give Insights into
Disease Pathogenesis
Validate Clinical
Gene Discoveries
Suggest
Therapeutic Targets
Entry Points
Foster Longer Standing
Collaborations
Decision Points Connections Destinations
Submit a
Connection
Application
Clinical
Advisory
Committee
Scientific
Advisory
Committee
Catalyst
Grants
Registry
Network Routemap
From the RDM website (have a look!)
http://rare-diseases-catalyst-network.ca
The	
  RDMM	
  has	
  generated	
  a	
  huge	
  amount	
  of	
  interest…	
  
Ac1vity	
  data	
  
as	
  of	
  4	
  Nov	
  
2016	
  
Ar1cle	
  about	
  RDMM	
  in	
  Nature	
  Medicine	
  
(2015)	
  21:	
  1242-­‐3	
  
…and	
  great	
  research!	
  
Nature	
  Gene.cs	
  (2016)	
  48:	
  777-­‐784,	
  acknowledges	
  RDMM	
  support	
  
Matchmaker	
  Exchange:	
  	
  
The	
  Next	
  Genera1on	
  
Kym	
  Boyco>,	
  PhD,	
  MD,	
  FRCPC,	
  FCCMG	
  
Professor	
  of	
  Pediatrics,	
  University	
  of	
  Oaawa	
  
On	
  behalf	
  of	
  MME	
  Working	
  Group	
  
Currently	
  Connected	
  MME	
  Services	
  
Federated	
  Network	
  
As	
  of	
  2016	
  
•  Australia	
  
–  Western	
  Australian	
  Department	
  of	
  Health	
  
•  Canada	
  
–  Canadian	
  Ins1tutes	
  for	
  Health	
  Research	
  
–  Genome	
  Canada	
  
•  China	
  
–  Beijing	
  Genomics	
  Ins1tute	
  
–  Chinese	
  Rare	
  Disease	
  Research	
  Consor1um	
  
–  WuXi	
  Apptec	
  
•  EU	
  
–  European	
  Commission	
  
•  Finland	
  
–  Academy	
  of	
  Finland	
  
•  France	
  
–  French	
  Associa1on	
  against	
  Myopathies	
  
–  Agence	
  Na1onal	
  de	
  la	
  Recherche	
  
–  Lysogene	
  
–  EORTC	
  
•  Georgia	
  
–  Children’s	
  New	
  Hospital	
  Management	
  Group	
  
•  Germany	
  
–  Federal	
  Ministry	
  of	
  Educa1on	
  and	
  Research	
  
•  Italy	
  
–  Italian	
  Higher	
  Ins1tute	
  of	
  Health	
  
–  Telethon	
  Founda1on	
  
–  Chiesi	
  Farmaceu1ca	
  
•  Interna1onal	
  Consor1um	
  
–  E-­‐RARE	
  3	
  Consor1um	
  
•  Japan	
  
–  Japan	
  Agency	
  for	
  Medical	
  Research	
  and	
  Development	
  
–  Na1onal	
  Ins1tutes	
  of	
  Biomedical	
  Innova1on,	
  Health,	
  and	
  Nutri1on	
  
	
  
•  Republic	
  of	
  Korea	
  
–  Korean	
  Na1onal	
  Ins1tute	
  of	
  Health	
  
•  Netherlands	
  
–  The	
  Netherlands	
  Organiza1on	
  for	
  Health	
  Research	
  and	
  
Development	
  
–  Prosensa	
  
•  Kingdom	
  of	
  Saudi	
  Arabia	
  
–  Saudi	
  Human	
  Genome	
  Project	
  
•  Spain	
  
–  Na1onal	
  Ins1tute	
  of	
  Health	
  Carlos	
  III	
  
•  UK	
  
–  Na1onal	
  Ins1tute	
  for	
  Health	
  Research	
  
•  USA	
  
–  Food	
  and	
  Drug	
  Administra1on	
  Orphan	
  Products	
  Grants	
  
Program	
  
–  Isis	
  Pharmaceu1cals	
  
–  Na1onal	
  Human	
  Genome	
  Research	
  Ins1tute	
  (NIH)	
  
–  Na1onal	
  Center	
  for	
  Advancing	
  Transla1onal	
  
Sciences(NIH)	
  
–  Na1onal	
  Cancer	
  Ins1tute	
  (NIH)	
  
–  Na1onal	
  Eye	
  Ins1tute	
  (NIH)	
  
–  Na1onal	
  Ins1tute	
  of	
  Neurological	
  Disorders	
  and	
  Stroke	
  
(NIH)	
  
–  Na1onal	
  Ins1tute	
  of	
  Arthri1s	
  and	
  Musculoskeletal	
  and	
  
Skin	
  Diseases	
  (NIH)	
  
–  Na1onal	
  Ins1tute	
  of	
  Child	
  Health	
  and	
  Human	
  
Development	
  (NIH)	
  
–  NKT	
  Therapeu1cs	
  
–  Office	
  of	
  Rare	
  Diseases	
  (NIH)	
  
–  PTC	
  Therapeu1cs	
  
–  Sanford	
  Research	
  Ins1tute	
  
•  Interna1onal	
  Pharma	
  Companies	
  
–  Genzyme	
  (Sanofi)	
  
–  Novar1s	
  
–  Pfizer	
  
–  Shire	
  
Progress	
  toward	
  IRDiRC’s	
  goals	
  
(source:	
  www.irdirc.org)	
  
•  Diagnos1cs	
  (goal:	
  most	
  rare	
  diseases	
  by	
  2020)	
  	
  
– Nearly	
  3,600	
  rare	
  diseases	
  for	
  which	
  there	
  is	
  a	
  
gene1c	
  test	
  available,	
  as	
  compared	
  with	
  2,200	
  in	
  
2010.	
  
•  Therapies	
  (goal:	
  200	
  new	
  therapies	
  by	
  2020)	
  
– 195	
  as	
  of	
  May	
  2016.	
  	
  	
  

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Rare Disease Research in Canada: Paul Lasko (CIHR - Institute of Genetics)

  • 1. Rare Disease Research in Canada: Building on Success Paul Lasko, Scientific Director, CIHR Institute of Genetics
  • 2. Rare disease research has been funded through a larger Personalized Health Initiative Personalized Medicine Initiative •  Enhance  health  outcomes  through   pa1ent  stra1fica1on  approaches  by   integra1ng  evidence-­‐based  medicine  and   precision  diagnos1cs  into  clinical  prac1ce   •  $240M  ($85M  from  CIHR)   •  110  compe11on  and  applica1on   partners,  including  Genome  Canada   2   •  Drive  evidence-­‐based   implementa1on  of  PH  that   will  iden1fy  solu1ons  that   can  contribute  to  more   cost-­‐effec1ve  and   sustainable  healthcare   •  CIHR’s  investments   currently  planned  :  $45M   •  Alignment  with  IC  PerMed   Personalized Health Initiative 2012   2016   eHealth Innovation Initiative •  Enhance  health  outcomes  and  health   care  delivery,  through  the   implementa1on,  evalua1on  and  scale-­‐ up  of  eHealth  innova1ons   •  $34.4M  ($16.2M  from  CIHR)   •  77  applica1on  partners  
  • 3. Canadian Success Stories 3   •  Recruited  over  3000  pa1ents  and  family   members  to  study;   •  Studied  637  different  rare  diseases;   •  Have  provided  a  diagnosis  to  over  1000   pa1ents;   •  Have  iden1fied  85  novel  rare  disease   genes;   •  Are  developing  three  experimental   therapies;   •  Contribute  to  interna1onal  data  sharing   standards.   •  Interna1onal  consor1um  grouping   samples  and  exper1se  on  high  grade   astrocytomas   •  Iden1fied  recurrent  driver  muta1ons   affec1ng  DNA  structure,  now  part  of   WHO  test  recommenda1ons   •  Developed  an  oncopanel  now  used  in   clinical  trials  and  CLIA  cer1fied    
  • 4. GeneX   $25K   $2.3  M  Catalyst  Grant  
  • 5. Network Catalyst Grant: “Canadian Rare Diseases : Models & Mechanisms Network” Objectives: 1.  Enable collaboration between clinician scientists (rare disease gene discovery) and basic scientists (expertise in the the cognate gene’s function) 2.  Determine the functional consequences of the mutations found (validate protein loss of function or altered function) coincident with discovery 3.  Provide seed funding ($25K) to the collaborating scientists to obtain functional data for publication or as preliminary results for a larger grant application 4.  Develop an information portal for resources, databases, technologies, core facilitites, etc. available in Canada For more information see Hieter and Boycott (2014) Genetics 198: 443-445.
  • 6. Clinical Gene Discovery Applicants Model Organism Investigators Register to Join the Network Generate Functional Data Give Insights into Disease Pathogenesis Validate Clinical Gene Discoveries Suggest Therapeutic Targets Entry Points Foster Longer Standing Collaborations Decision Points Connections Destinations Submit a Connection Application Clinical Advisory Committee Scientific Advisory Committee Catalyst Grants Registry Network Routemap From the RDM website (have a look!) http://rare-diseases-catalyst-network.ca
  • 7. The  RDMM  has  generated  a  huge  amount  of  interest…   Ac1vity  data   as  of  4  Nov   2016   Ar1cle  about  RDMM  in  Nature  Medicine   (2015)  21:  1242-­‐3  
  • 8. …and  great  research!   Nature  Gene.cs  (2016)  48:  777-­‐784,  acknowledges  RDMM  support  
  • 9. Matchmaker  Exchange:     The  Next  Genera1on   Kym  Boyco>,  PhD,  MD,  FRCPC,  FCCMG   Professor  of  Pediatrics,  University  of  Oaawa   On  behalf  of  MME  Working  Group  
  • 10. Currently  Connected  MME  Services   Federated  Network   As  of  2016  
  • 11. •  Australia   –  Western  Australian  Department  of  Health   •  Canada   –  Canadian  Ins1tutes  for  Health  Research   –  Genome  Canada   •  China   –  Beijing  Genomics  Ins1tute   –  Chinese  Rare  Disease  Research  Consor1um   –  WuXi  Apptec   •  EU   –  European  Commission   •  Finland   –  Academy  of  Finland   •  France   –  French  Associa1on  against  Myopathies   –  Agence  Na1onal  de  la  Recherche   –  Lysogene   –  EORTC   •  Georgia   –  Children’s  New  Hospital  Management  Group   •  Germany   –  Federal  Ministry  of  Educa1on  and  Research   •  Italy   –  Italian  Higher  Ins1tute  of  Health   –  Telethon  Founda1on   –  Chiesi  Farmaceu1ca   •  Interna1onal  Consor1um   –  E-­‐RARE  3  Consor1um   •  Japan   –  Japan  Agency  for  Medical  Research  and  Development   –  Na1onal  Ins1tutes  of  Biomedical  Innova1on,  Health,  and  Nutri1on     •  Republic  of  Korea   –  Korean  Na1onal  Ins1tute  of  Health   •  Netherlands   –  The  Netherlands  Organiza1on  for  Health  Research  and   Development   –  Prosensa   •  Kingdom  of  Saudi  Arabia   –  Saudi  Human  Genome  Project   •  Spain   –  Na1onal  Ins1tute  of  Health  Carlos  III   •  UK   –  Na1onal  Ins1tute  for  Health  Research   •  USA   –  Food  and  Drug  Administra1on  Orphan  Products  Grants   Program   –  Isis  Pharmaceu1cals   –  Na1onal  Human  Genome  Research  Ins1tute  (NIH)   –  Na1onal  Center  for  Advancing  Transla1onal   Sciences(NIH)   –  Na1onal  Cancer  Ins1tute  (NIH)   –  Na1onal  Eye  Ins1tute  (NIH)   –  Na1onal  Ins1tute  of  Neurological  Disorders  and  Stroke   (NIH)   –  Na1onal  Ins1tute  of  Arthri1s  and  Musculoskeletal  and   Skin  Diseases  (NIH)   –  Na1onal  Ins1tute  of  Child  Health  and  Human   Development  (NIH)   –  NKT  Therapeu1cs   –  Office  of  Rare  Diseases  (NIH)   –  PTC  Therapeu1cs   –  Sanford  Research  Ins1tute   •  Interna1onal  Pharma  Companies   –  Genzyme  (Sanofi)   –  Novar1s   –  Pfizer   –  Shire  
  • 12. Progress  toward  IRDiRC’s  goals   (source:  www.irdirc.org)   •  Diagnos1cs  (goal:  most  rare  diseases  by  2020)     – Nearly  3,600  rare  diseases  for  which  there  is  a   gene1c  test  available,  as  compared  with  2,200  in   2010.   •  Therapies  (goal:  200  new  therapies  by  2020)   – 195  as  of  May  2016.