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WAVES AND FIELDS
IN BIO-ONTOLOGIES
    Colin Batchelor, RSC
Janna Hastings, EBI / Geneva
OVERVIEW

•   Waves in a medium
•   Waves without a medium
•   Photons
•   Fields
WAVES IN A MEDIUM
What is a wave?

• A process?
• A material portion of the waving medium?
• A disposition?
AGAINST PORTIONHOOD
Waves are superposable.

A trough of one wave may physically
  coincide with a peak of another.

Throw two pebbles into any pond if you
 need to be convinced of this.
AGAINST PORTIONHOOD
Standing waves have
  portions of the
  medium that don’t
  move.
AGAINST DISPOSITIONHOOD
Medium-borne waves need a medium and this
 medium needs the appropriate dispositions.

A Mexican Wave is borne by a discontinuous
  medium.

You collectively have the disposition to manifest a
  Mexican Wave.

If you are not waving Mexican right now then the
   wave is not identical with the disposition.
WHAT ABOUT WAVES
WITHOUT A MEDIUM?
ARE PHOTONS ENERGY?
NO.
Energy is not the kind of thing that
  can bear angular momentum.
Photons have angular
    momentum.
Spectroscopy only works because
photons have angular momentum.
When a sodium atom
 undergoes a 3p → 3s
 transition, it loses
 angular momentum.

The angular momentum is
  carried away by an
  orange photon.

This is how sodium
  streetlights work.
MASSLESSNESS AND
             MATERIALITY
Consider a massless, yet charged, cricket ball.

It is repelled by the surface charges on ordinary
    objects.
It is spatially extended, so can have angular
    momentum.
Its passage through the air is slowed by induced
    charges on nitrogen and oxygen molecules.
It will be visible because it is coated in dust and bits
    of grass.
It has a history.

But if you hit it for six you will never see it again.
WHAT IS A FIELD?
A field, in the sense we are interested in, is
  something that has different values at different
  points in space.

We can describe many things in terms of a field.


It does not follow that a field is a kind, that the
   gravitational field of Uranus is of a kind with the
   electrical field of a van der Graaff generator is of a
   kind with the population density in Graz is of a kind
   with the direction of the hairs on my head at each
   point of my scalp.
ELECTROMAGNETIC
       FIELDS
GRAVITATIONAL FIELDS
 describe the manifestation of a
  mutual disposition at a given
          point in space
ELECTROMAGNETIC
       FIELDS
GRAVITATIONAL FIELDS
describe the curvature of space–
 time at a given point in space
            and time
ELECTROMAGNETIC
       FIELDS
GRAVITATIONAL FIELDS
 have a gauge boson we have
       actually detected
IN BRIEF
Waves cannot be identified with the portions of
 their bearers, but wavefronts can.

Waves cannot be identified with a disposition of
 their bearers.

Photons are not energy.

Fields are not a natural kind.
QUESTIONS?

batchelorc@rsc.org
hastings@ebi.ac.uk

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Waves and fields in bio-ontologies

  • 1. WAVES AND FIELDS IN BIO-ONTOLOGIES Colin Batchelor, RSC Janna Hastings, EBI / Geneva
  • 2. OVERVIEW • Waves in a medium • Waves without a medium • Photons • Fields
  • 3. WAVES IN A MEDIUM What is a wave? • A process? • A material portion of the waving medium? • A disposition?
  • 4. AGAINST PORTIONHOOD Waves are superposable. A trough of one wave may physically coincide with a peak of another. Throw two pebbles into any pond if you need to be convinced of this.
  • 5. AGAINST PORTIONHOOD Standing waves have portions of the medium that don’t move.
  • 6. AGAINST DISPOSITIONHOOD Medium-borne waves need a medium and this medium needs the appropriate dispositions. A Mexican Wave is borne by a discontinuous medium. You collectively have the disposition to manifest a Mexican Wave. If you are not waving Mexican right now then the wave is not identical with the disposition.
  • 9. NO.
  • 10. Energy is not the kind of thing that can bear angular momentum.
  • 11. Photons have angular momentum.
  • 12. Spectroscopy only works because photons have angular momentum.
  • 13. When a sodium atom undergoes a 3p → 3s transition, it loses angular momentum. The angular momentum is carried away by an orange photon. This is how sodium streetlights work.
  • 14. MASSLESSNESS AND MATERIALITY Consider a massless, yet charged, cricket ball. It is repelled by the surface charges on ordinary objects. It is spatially extended, so can have angular momentum. Its passage through the air is slowed by induced charges on nitrogen and oxygen molecules. It will be visible because it is coated in dust and bits of grass. It has a history. But if you hit it for six you will never see it again.
  • 15. WHAT IS A FIELD? A field, in the sense we are interested in, is something that has different values at different points in space. We can describe many things in terms of a field. It does not follow that a field is a kind, that the gravitational field of Uranus is of a kind with the electrical field of a van der Graaff generator is of a kind with the population density in Graz is of a kind with the direction of the hairs on my head at each point of my scalp.
  • 16. ELECTROMAGNETIC FIELDS GRAVITATIONAL FIELDS describe the manifestation of a mutual disposition at a given point in space
  • 17. ELECTROMAGNETIC FIELDS GRAVITATIONAL FIELDS describe the curvature of space– time at a given point in space and time
  • 18. ELECTROMAGNETIC FIELDS GRAVITATIONAL FIELDS have a gauge boson we have actually detected
  • 19. IN BRIEF Waves cannot be identified with the portions of their bearers, but wavefronts can. Waves cannot be identified with a disposition of their bearers. Photons are not energy. Fields are not a natural kind.