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A stop codon mutation in
SCN9A causes
lack of pain sensation
By:
Hadiah Bassam Al Mahdi
Bachelor in Science
May
2010
 It is the rapid response to represent stimuli from
the environment.
 Essential for survival because these
environmental factors may cause physical
damage
 There are numerous receptors, ion channel
and other proteins involved in perception
and transmission of painful stimuli.
Introduction
Sensation:
 Is a gene located on chromosome 2 and
coded for voltage gated sodium channel
Nav1.7 which plays a significant role in
nociception signalling
 The mutation C A transvertion at
nucleotide 984 transforming the codon
tyrosine at 328 to a stop codon truncated
protein that can’t perform its function.
SCN9A
erythermalgia
Different mutations in
voltage-gated channel
Nav1.7 have been shown to
be associated with tow
congenital disorder
erythromelalgia,
paroxysmal extreme pain.
Mutation other than stop codon
Structure:
Action potential is electrical
membrane potential cells.
In neurons, it plays central role
in cell to cell communications.
Nerves impulse
Nav1.7 play a critical role in generation
and conduction of action potential
 Screning of stop codon mution in
SCN9A and its relation with lack pain
sensation .
 Knock out of Nav1.7 in mice to see
what is the effect and compare it with
human.
Objectives:
Mutational analysis and
bioinformatics
Ensembl used for deriving a list of
exons sequence.
Primer3 to design amplified exons
primers.
PCR touch down PCR were used.
Mutation detection was performed by
comparing the sequence of two affected
individuals with healthy control.
• Human NAv1.7 gene mutation assembled from
overlapping pcr fragments.
• the mutant,Nav1.7 stop 328 was generated by
replacing the codon for residue 328 with a stop
codon.
• the resulting construct was cloned into
pcDNA(pZsGreen1-N1) and was used in
co-transfection to visualize transfected cells.
Construct and site directed
mutagenesis
 The transformed cells(HEK293 and
ND7/23 ) were cultured in an
appropriate media after transfection by
lipofection.
Cell culture:
uses a
micropipette
attached to the
cell membrane to
allow recording
from a single ion
channel
cell-
attached
patch
clamp
Electrophysiology study
Membrane capacitance were contineously
monitored using a short -10mv and -100mv
pulse
Membrane capacitance were contineously
monitored using a short -10mv and -100mv pulse
Probes and in situ hybridization
Used to
defect
Nav1.7
mRNA on
selected
tissue .
 Hybridization signal intensity was
assessed using both the film
autoradiogram and the emulsion-
dipped slides.
Image analysis and
photography
 Canadian family parents noticed when
your child infection or injury did not
report pain and they never cried.
 The neurological examination of
sensory & mental function was normal
and can discriminate between hot &
cold or sharp & dull .
Results:
Genotyping of Canadian family:
Pedigree structure and genotype of Canadian
family members with congenital inability to
experience pain
Sequencing
Functional evaluation of the
mutation
Schematic representation of the Nav1.7 protein and
localization of the identified stop codon mutation
after the fifth transmembrane region in domain 1.
1. Nonsense –messenger-mediated RNA
decay which have no functional
consequences.
2. Truncated protein lacking all
pore-forming regions of the full-length
channel.
Expected results of mutation
Re-engineered the mutation (Nav1.7 stop328) and full
length human Nav1.7 cDNA in pZsGreen1-N1
Test of the functionality of truncated
protein
Transient transfected in HEK293 and ND7/23
cell lines
Performed whole-cell patch-clamp experiments
Functional effects of mutation
Typical voltage
activated sodium
current
No current
produced
Transfection of NaV1.7stop328 did not alter
the voltage gated current
control
Transfected
cells
 Global deficiency of Nav1.7 in human appear
healthy but in mice is lethal.
 To test this difference they compared the
expression of this gene in rat, mouse,
monkey and human tissue using in situ
hybridization technique.
Why Nav1.7 serves different functions
in the species ?
 First: they examined the expression of
Nav1.7 mRNA in the brain.
 Second: they also measure the
expression of mRNA in the endocrine
gland.
Two experiments were
performed
Strong hybridization signals of Nav1.7 mRNA
in all four species
In dorsal root gangelia (DRG)In dorsal root gangelia (DRG)
Prominent mRNA hybridization signal in both
rodent
ratmouse
signal in the
paraventricular
hypothalamic
nucleus(Pa)
and supraoptic
nucleus(SO)
mRNA hybridization signal in (Pa and SO)
primate is not prominent
monkey Human
The ISH
signal
observed
in primate
was much
weaker
than
strong
labeling
present in
both
rodent
species
 Nav1.7 mRNA hybridization signal is
detected in the rat but not in human.
Nav1.7 mRNA expression in adrenal
gland
 The interior lobe of the human pituitary was
devoid of Nav1.7 mRNA hybridization signal
but in the rat are labeled.
Nav1.7 mRNA expression in pituitary
gland
rat Human
 Congenital inability to experience pain phenotype is
linked to loss of function mutation in SCN9A gene.
 The patients claim to start to feel pain during
adolescence may be reflective of the emergence of a
true pain sensation, but could also be a learned
behavior.
 The difference in expression of Nav 1.7 mRNA in
rodent than primate explains why global deficiency
of Nav1.7 is lethal in mice but not in humans.
conclusion
 Wolfe JN. Breast patterns as an index of risk for
developingbreast cancer. AJR Am J Roentgenol 1976;
126: 1130-1137.
 Saftlas AF, Szklo M. Mammographic parenchymal
patterns and breast cancer risk. Epidemiol Rev 1987;
9: 146-174.
 Genetic deteminants of mammographic density.
Breast Cancer Res (on line) http://breast-
cancerresearch.com/content/4/3/R5; 2002.
 Lai JH, Vesprini D, Zhang W, Yaffe MJ, Pollak M,
Narod SA.A polymorphic locus in the promoter
region of the IGFBP3gene is related to
mammographic breast density.
Refrences
Questions????

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A stop codon mutation in scn9a causes lack of pain sensation

  • 1. A stop codon mutation in SCN9A causes lack of pain sensation By: Hadiah Bassam Al Mahdi Bachelor in Science May 2010
  • 2.  It is the rapid response to represent stimuli from the environment.  Essential for survival because these environmental factors may cause physical damage  There are numerous receptors, ion channel and other proteins involved in perception and transmission of painful stimuli. Introduction Sensation:
  • 3.  Is a gene located on chromosome 2 and coded for voltage gated sodium channel Nav1.7 which plays a significant role in nociception signalling  The mutation C A transvertion at nucleotide 984 transforming the codon tyrosine at 328 to a stop codon truncated protein that can’t perform its function. SCN9A
  • 4. erythermalgia Different mutations in voltage-gated channel Nav1.7 have been shown to be associated with tow congenital disorder erythromelalgia, paroxysmal extreme pain. Mutation other than stop codon
  • 6. Action potential is electrical membrane potential cells. In neurons, it plays central role in cell to cell communications. Nerves impulse
  • 7. Nav1.7 play a critical role in generation and conduction of action potential
  • 8.  Screning of stop codon mution in SCN9A and its relation with lack pain sensation .  Knock out of Nav1.7 in mice to see what is the effect and compare it with human. Objectives:
  • 9.
  • 10. Mutational analysis and bioinformatics Ensembl used for deriving a list of exons sequence. Primer3 to design amplified exons primers. PCR touch down PCR were used. Mutation detection was performed by comparing the sequence of two affected individuals with healthy control.
  • 11. • Human NAv1.7 gene mutation assembled from overlapping pcr fragments. • the mutant,Nav1.7 stop 328 was generated by replacing the codon for residue 328 with a stop codon. • the resulting construct was cloned into pcDNA(pZsGreen1-N1) and was used in co-transfection to visualize transfected cells. Construct and site directed mutagenesis
  • 12.  The transformed cells(HEK293 and ND7/23 ) were cultured in an appropriate media after transfection by lipofection. Cell culture:
  • 13. uses a micropipette attached to the cell membrane to allow recording from a single ion channel cell- attached patch clamp Electrophysiology study Membrane capacitance were contineously monitored using a short -10mv and -100mv pulse Membrane capacitance were contineously monitored using a short -10mv and -100mv pulse
  • 14. Probes and in situ hybridization Used to defect Nav1.7 mRNA on selected tissue .
  • 15.  Hybridization signal intensity was assessed using both the film autoradiogram and the emulsion- dipped slides. Image analysis and photography
  • 16.  Canadian family parents noticed when your child infection or injury did not report pain and they never cried.  The neurological examination of sensory & mental function was normal and can discriminate between hot & cold or sharp & dull . Results:
  • 17. Genotyping of Canadian family: Pedigree structure and genotype of Canadian family members with congenital inability to experience pain
  • 19. Functional evaluation of the mutation Schematic representation of the Nav1.7 protein and localization of the identified stop codon mutation after the fifth transmembrane region in domain 1.
  • 20. 1. Nonsense –messenger-mediated RNA decay which have no functional consequences. 2. Truncated protein lacking all pore-forming regions of the full-length channel. Expected results of mutation
  • 21. Re-engineered the mutation (Nav1.7 stop328) and full length human Nav1.7 cDNA in pZsGreen1-N1 Test of the functionality of truncated protein Transient transfected in HEK293 and ND7/23 cell lines Performed whole-cell patch-clamp experiments
  • 22. Functional effects of mutation Typical voltage activated sodium current No current produced
  • 23. Transfection of NaV1.7stop328 did not alter the voltage gated current control Transfected cells
  • 24.  Global deficiency of Nav1.7 in human appear healthy but in mice is lethal.  To test this difference they compared the expression of this gene in rat, mouse, monkey and human tissue using in situ hybridization technique. Why Nav1.7 serves different functions in the species ?
  • 25.  First: they examined the expression of Nav1.7 mRNA in the brain.  Second: they also measure the expression of mRNA in the endocrine gland. Two experiments were performed
  • 26. Strong hybridization signals of Nav1.7 mRNA in all four species In dorsal root gangelia (DRG)In dorsal root gangelia (DRG)
  • 27. Prominent mRNA hybridization signal in both rodent ratmouse signal in the paraventricular hypothalamic nucleus(Pa) and supraoptic nucleus(SO)
  • 28. mRNA hybridization signal in (Pa and SO) primate is not prominent monkey Human The ISH signal observed in primate was much weaker than strong labeling present in both rodent species
  • 29.  Nav1.7 mRNA hybridization signal is detected in the rat but not in human. Nav1.7 mRNA expression in adrenal gland
  • 30.  The interior lobe of the human pituitary was devoid of Nav1.7 mRNA hybridization signal but in the rat are labeled. Nav1.7 mRNA expression in pituitary gland rat Human
  • 31.  Congenital inability to experience pain phenotype is linked to loss of function mutation in SCN9A gene.  The patients claim to start to feel pain during adolescence may be reflective of the emergence of a true pain sensation, but could also be a learned behavior.  The difference in expression of Nav 1.7 mRNA in rodent than primate explains why global deficiency of Nav1.7 is lethal in mice but not in humans. conclusion
  • 32.  Wolfe JN. Breast patterns as an index of risk for developingbreast cancer. AJR Am J Roentgenol 1976; 126: 1130-1137.  Saftlas AF, Szklo M. Mammographic parenchymal patterns and breast cancer risk. Epidemiol Rev 1987; 9: 146-174.  Genetic deteminants of mammographic density. Breast Cancer Res (on line) http://breast- cancerresearch.com/content/4/3/R5; 2002.  Lai JH, Vesprini D, Zhang W, Yaffe MJ, Pollak M, Narod SA.A polymorphic locus in the promoter region of the IGFBP3gene is related to mammographic breast density. Refrences

Editor's Notes

  1. Membrane capacitance were contineously monitored using a short -10mv and -100mv pulse.
  2. First, section were thawed at room temp. Prior to fixation with par formaldehyde, then slide were hybridized with 35S-labeled Nav1.7 probes Mouse & Rat tissue were incubated with the mouse and rat antisense probes, whereas primate tissue were hybridized with the human probe.
  3. Three of initially affected individuals start to notice pain in there early teens whereas the forth individuals examined at age three did not display pain behaviour
  4. As expected transient transfection of Nav1.7 cDNA in HEK293 resulted in voltage activated response. Transfection with Nav1.7stop328 in HEK293 did not result in measurable response. Transfection of Nav1.7stop238 in ND7/23 would cause compensatory effects on expression of channel.
  5. Examination of emulsion-coated sections of weak labeling of cells in (Pa) regions