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Interaction of Infectious Spleen and Kidney Necrosis Virus ORF119L with PINCH1
Leads to Dominant-Negative Inhibition of ILK and Cardiovascular Defects in2
Zebrafish3
4
Running title: A Dominant-Negative Inhibitor of ILK from Iridovirus5
6
Ji-Min Yuan 1,
*, Bai-Liang He 1,
*, Lu-Yun Yang 1
, Chang-Jun Guo 1, 2
, Shao-Ping Weng 1,
7
2
, Shengwen Calvin Li 3
, and Jian-Guo He 1, 2, #
8
9
1
MOE Key Laboratory of Aquatic Product Safety / State Key Laboratory of Biocontrol,10
School of Life Sciences, Sun Yat-sen University, 135 Xingang Road West, Guangzhou11
510275, China.12
2
School of Marine Sciences, Sun Yat-sen University, 135 Xingang Road West,13
Guangzhou 510275, China.14
3
CHOC Children’s Hospital, University of California Irvine, Orange, CA 92868, USA15
* These authors contributed equally to this work.16
17
#
Corresponding Author: Dr. Jian-Guo He18
State Key Laboratory of Biocontrol, School of Life Science; Key Laboratory of Aquatic19
Food Safety, the Ministry of Education, School of Marine Sciences, Sun Yat-sen University,20
Guangzhou 510275, China.21
Tel.: +86 20 39332988; Fax: +86 20 3933284922
Email: lsshjg@mail.sysu.edu.cn23
24
JVI Accepts, published online ahead of print on 29 October 2014
J. Virol. doi:10.1128/JVI.01955-14
Copyright © 2014, American Society for Microbiology. All Rights Reserved.
2
Abstract25
Infectious spleen and kidney necrosis virus (ISKNV) is the type species of the26
Megalocytivirus genus, Iridoviridae family, causing a severe systemic disease with high27
mortality to mandarin fish (Siniperca chuatsi) in China and South-East Asia. Up to now,28
the pathogenesis of ISKNV infection is still not fully understood. Based on a genome-wide29
bioinformatics analysis of ISKNV-encoded proteins, we found that ISKNV open reading30
frame 119L (ORF119L) is predicted to encode a three ankyrin-repeats (3ANK)31
domain-containing protein, which shows high similarity to the dominant-negative form of32
integrin-linked kinase (ILK), i.e., viral ORF119L lacks the ILK kinase domain. Thus, we33
speculated that viral ORF119L might affect the host ILK complex. Here, we demonstrated34
that viral ORF119L directly interacts with particularly interesting Cys-His-rich protein35
(PINCH) and affects the host ILK-PINCH interaction in vitro in Fathead minnow (FHM)36
cells. In vivo ORF119L overexpression in zebrafish (Danio rerio) embryos resulted in37
myocardial dysfunctions with disintegration of sarcomeric Z-disk. Importantly, ORF119L38
overexpression in zebrafish highly resembles the phenotype of endogenous ILK inhibition,39
either by over-expressing a dominant-negative form of ILK or by injecting an ILK40
antisense morpholino. Intriguingly, ISKNV-infected mandarin fish develop disorganized41
sarcomeric Z-disk in cardiomyocytes. Furthermore, phosphorylation of AKT, a42
downstream effector of ILK, was remarkably decreased in ORF119L overexpressing43
zebrafish embryos. As such, we show that ISKNV ORF119L acts as a domain-negative44
inhibitor of the host ILK, providing a novel mechanism for the megalocytivirus45
pathogenesis.46
47
3
IMPORTANCE: Our work is the first to show the role of a dominant-negative inhibitor of48
the host ILK from ISKNV (an Iridovirus). Mechanistically, the viral ORF119L directly49
binds to the host PINCH, attenuates the host PINCH-ILK interaction, and thus impairs the50
ILK signalling. Intriguingly, ORF119L-overexpressing zebrafish embryos and51
ISKNV-infected mandarin fish develop similar disordered sarcomeric Z-disk in52
cadiomyocytes. These findings provide a novel mechanism for megalocytivirus53
pathogenesis.54
55
4
Introduction56
Infectious spleen and kidney necrosis virus (ISKNV) is the type species of the57
Megalocytivirus genus, Iridoviridae family. ISKNV and closely related isolates infect a58
wide range of marine and freshwater fish species, including mandarin fish (Siniperca59
chuatsi) (1), orange-spotted grouper (Epinephelus coioides) (2), large yellow croaker60
(Larimichthys crocea) (3), Aplocheilichthys normani (4), turbot (Scophthalmus maximus),61
zebrafish (Danio rerio) (5), and more than 50 species of marine fish (6). In China, ISKNV62
causes a serious disease with high mortality in mandarin fish, leading to economic loss and63
ecological problems. To control the virus, we started the viral pathogenesis study by64
sequencing ISKNV genome.65
66
In this study, we found that ISKNV open reading frame 119L (ORF119L) is predicted to67
encode an ankyrin-repeat-containing protein but without the kinase domain. The68
NH2-terminal three ankyrin-repeats (3ANK)-containing domain of ORF119L is highly69
similar to that of integrin-linked kinase (ILK). The myxoma virus M-T5 (7, 8), myxoma70
nuclear factor (MNF) (9), poxvirus ankyrin-repeats proteins (10, 11), vaccinia virus K1L71
protein (12), and ISKNV ORF124L (13) have this ankyrin-repeat-containing domain. All72
of these proteins have been reported to be involved in viral pathogenesis.73
74
In the host ILK signalling, ILK complexes with particularly interesting Cys-His-rich75
protein (PINCH) and Parvin, and plays a crucial role in the cell-adhesion and intracellular76
signal transduction (14, 15). Structurally, the NH2-terminus of ILK is a 3ANK-containing77
domain capable of binding to the LIM1 domain of PINCH (16-19), while the78
5
COOH-terminus of ILK contains a kinase domain responsible for interacting with Parvin.79
Functionally, ILK phosphorylates protein kinase B (PKB, also known as AKT) and80
glycogen synthase kinase 3 (GSK-3) for intracellular signal transduction (18). Mice with81
the germ line mutated ILK in which Val(386) and Thr(387) in the kinase domain are82
substituted with glycine residues (ILK-VT/GG) dies of vasculogenesis defects at83
embryonic day 12.5 due to the fact that VT/GG substitutions decrease ILK protein stability84
leading to decreased ILK levels and reduced binding to paxillin and α-parvin (20). Heart85
failure and pericardial edema phenotypes are found in zebrafish expressing ILKL308P
86
(kinase-dead mutant) during early embryogenesis (21). In mammalian cells,87
overexpression of the 3ANK domain of ILK without its kinase domain disrupts the88
assembly of the PINCH-ILK-Parvin complex, exerting its dominant-negative inhibitory89
(DNI) effect on ILK-mediated signalling (22, 23).90
91
All of these prompted us to hypothesize that ORF119L may play a role in the host ILK92
signalling. We studied the function of ORF119L in vivo by using the zebrafish model93
because we could observe the rapid embryonic development of zebrafish and manipulate94
its embryos outside of the parental animal (24-26). Furthermore, zebrafish have been used95
to study the viral gene function and pathogenesis of ISKNV as previously described96
(27-31). Here, we demonstrated that ORF119L interacts with PINCH and affects the97
binding of ILK to PINCH, which leads to cardiovascular defects in zebrafish likely derived98
from its ability to reduce ILK-mediated AKT phosphorylation. Consistent with this,99
inhibiting the endogenous zebrafish ILK effectively mimics ORF119L-induced abnormal100
phenotype. Taken together, our data suggest that ISKNV ORF119L may function as a novel101
6
DNI-like factor of ILK.102
103
Materials and Methods104
Collection of ISKNV-infected fish and isolation of viral DNA105
The moribund mandarin fish showing the common symptom of ISKNV infection were106
collected and kept at -80°C. ISKNV infection in mandarin fish, virus purification, and viral107
DNA extraction (Universal Genomic DNA Extraction Kit Ver.3.0, TaKaRa, Dalian, China)108
were performed as described previously (5, 27).109
110
Zebrafish maintenance, plasmid construction and micro-injection111
A zebrafish transgenic line, Tg (flk1:GFP) expressing an green fluorescence protein (GFP)112
that is driven by the zebrafish flk1(also known as vascular endothelial growth factor113
receptor) promoter was used with the Wild-type zebrafish as the control group. All114
zebrafish were maintained at 28°C as previously described (31). Zebrafish embryos were115
kept in E3 zebrafish water containing 5.0 mM NaCl, 0.17 mM KCl, 0.33 mM CaCl2, 0.33116
mM MgSO4, pH=7.4 at 28.5°C and their developmental stages were defined as hour117
post-fertilization (hpf) or day post-fertilization (dpf) (27, 32). To construct the plasmids for118
micro-injection in zebrafish embryos, the full-length of ISKNV ORF119L was PCR119
amplified (Primers in Table. 1) using the ISKNV genomic DNA. The PCR products were120
subcloned into the pDsRed2-C1 (Takara Bio Company, Clontech; Mountain View, CA) to121
generate the RFP-ORF119L expressing plasmid pRFP-ORF119L. Similarly, the ORF119L122
PCR products were subcloned into the pEGFP-N3 vector (Clontech; Mountain View, CA)123
to generate the ORF119L-EGFP expressing plasmid pORF119L-EGFP. The124
7
RFP-ORF119L or ORF119L-EGFP overexpressing embryos were simply named as125
ORF119L embryos hereafter. To over-express the ORF119L mutant lacking the126
3ANK-containing domain (119LΔ3ANK), the 119LΔ3ANK sequence was PCR amplified127
and subcloned into the pEGFP-N3 plasmid to generate the 119LΔ3ANK-EGFP expressing128
plasmid p119LΔ3ANK-EGFP. The zebrafish first strand cDNA was synthesized as129
previously described (31). To over-express the 3ANK domain of ILK (ILK3ANK),130
zebrafish ILK3ANK sequence (without the ILK kinase domain) was PCR amplified from131
zebrafish cDNA, and then subcloned into the pEGFP-N3 vector to generate the132
ILK3ANK-EGFP expressing plasmid pILK3ANK-EGFP. All plasmids and inserts were133
confirmed by bi-direction sequencing. The protocol of plasmids micro-injection and image134
capture was described previously (31). Briefly, the plasmids were linearized and purified135
(QIAquick PCR Purification Kit, USA), and resuspended in water at 100 ng/ul. Plasmids136
were micro-injected (IM300 Microinjector, Narishige, Japan) into one-cell stage zebrafish137
embryos at 1 nl per embryo. Embryos were captured at different developmental stages138
using an OlympusDP71 digital camera mounted onto an OLYMPUS MVX10 fluorescence139
stereomicroscope.140
141
Bioinformatics analysis142
A BLAST (Basic Local Alignment Search Tool) (33) search was performed to compare the143
ISKNV ORF119L protein sequence to the NCBI (National Center for Biotechnology144
Information) zebrafish protein database (39495 reference sequence). Phylogenetic tree145
analysis was performed using the Fast Minimum Evolution method (34). Domains feature146
from different proteins were analyzed by SMART program147
8
(http://smart.embl-heidelberg.de/) (35). The model structure of the proteins were generated148
using the SWISS-MODEL Workspace (http://swissmodel.expasy.org/workspace/) (36).149
Multiple sequence alignments were performed as described previously150
(http://www.ebi.ac.uk/Tools/clustalw) (37).151
152
Immunofluorescence staining153
To examine the intracellular distribution of PINCH in the presence or absence of ORF119L,154
MYC-ORF119L, MYC-ILK, and FLAG-PINCH fusion protein expressing plasmids were155
constructed. The full-length of ORF119L and 119LΔ3ANK was PCR amplified (Primers in156
Table. 1) by using the ISKNV genomic DNA, and subcloned into pc-Myc-CMV-2 vector157
(SIGMA; Ronkonkoma, NY, USA) to generate the MYC-ORF119L and158
MYC-119LΔ3ANK expressing plasmid pMYC-ORF119L and pMYC-119LΔ3ANK,159
respectively. The full-length of zebrafish ILK and PINCH was PCR amplified (Primers in160
Table. 1) by using the zebrafish cDNA, subcloned into pc-Myc-CMV-2 and161
pFLAG-CMV-2 vector (SIGMA; Ronkonkoma, NY, USA) to generate the MYC-ILK162
expressing plasmid pMYC-ILK and FLAG-PINCH expressing plasmid pFLAG-PINCH,163
respectively. Fathead minnow (FHM) cells were cultured on coverslips, and transfected164
with pMYC-ORF119L, pMYC-ILK, and pFLAG-PINCH (as specified in each165
experiment). One day post-transfection, the samples were fixed by methanol for 30166
minutes at 4°C. After washing in three changes of PBS and blocking (PBS with 10%167
normal blocking serum), samples were incubated with 1:500 diluted primary antibodies168
(rabbit anti-FLAG antibody and mouse anti-MYC antibody, Sigma) overnight at 4°C.169
After washing for 3 times, the cells were incubated in 1:500 diluted secondary antibodies170
9
[Alexa Fluor 488 Goat Anti-Mouse IgG (H+L) antibody, and Alexa Fluor 555 Goat171
Anti-Rabbit IgG (H+L) antibody, Life technologies] for 1 hour at room temperature in the172
dark. Heochst 33342 was then applied for nucleus staining. After rinsing for 5 times in PBS,173
cells were examined under ZEISS LSM7 DUO NLO confocal microscope.174
175
GST pull-down assay176
The full-length of zebrafish ILK, and ISKNV ORF119L were PCR amplified (Primers in177
Table. 1) and subcloned into pGEX-4T-1 vector (GE Healthcare) to generate the GST-ILK178
expressing plasmid pGST-ILK, and GST-ORF119L expressing plasmid pGST-ORF119L,179
respectively. Plasmid pGEX-4T-1, pGST-ILK, and pGST-ORF119L were transformed into180
Escherichia coli (E. coli) BL21 cells to express GST, GST-ILK, and GST-ORF119L,181
respectively. Human embryonic kidney 293T (HEK293T) cells were cultured in182
Dulbecco’s Modified Eagle’ Medium with 10% fetal bovine serum at 5% CO2. Plasmid183
pFLAG-PINCH was transfected (Lipofectamine 2000, Life Technologies) into HEK293T184
cells (cultured in 10 cm plate) to express the FLAG-PINCH fusion proteins. GST185
pull-down assays were performed as described previously (31), according to the186
manufacturer's instructions (MagneGSTTM
Pull-Down System, Promega, Madison, WI,187
USA). Briefly, 1 ml GST, GST-ILK, and GST-ORF119L expressing BL21 bacterial cells188
were harvested, lysed by 200 μl of MagneGSTTM
Cell Lysis Reagent, incubated for 30189
minutes on a rotating platform, and then precleared lysats were added into the tube190
containing the pre-equilibrated MagneGSTTM
Glutathione particles (20 μl for each sample).191
After incubating for 30 minutes at room temperature, the GST control, GST-ILK, and192
GST-ORF119L immobilized particles were captured by a magnet stand; the particles were193
10
then washed by MagneGSTTM
Binding/Wash Buffer for 5 minutes at three times, and194
resuspended in 20 μl MagneGSTTM
Binding/Wash Buffer. Aliquots of 5 μl of particles195
bound to the GST control, GST-ILK, GST-ORF119L fusion protein, respectively, were196
saved for analysis of the specificity and efficiency of immobilization by Coomassie197
staining of SDS-PAGE. The FLAG-PINCH expressing HEK293T cells were lysed by 1 ml198
cell lysis buffer (Beyotime, Jiangsu, China) containing the phosphatase/protease inhibitor199
cocktail. 100 μl cell lysate was saved at -20°C for loading control, and the other 800 μl was200
added into the GST control, GST-ILK, and GST-ORF119L pre-immobilized particles,201
respectively, and incubated for 1hour at room temperature on a rotating platform.202
Non-specific binding was removed by washing in 400 μl MagneGSTTM
Binding/Wash203
Buffer for 5 minutes at five times. Finally, the FLAG-PINCH bound to particles were204
released by boiling in 20 μl 1X SDS loading buffer for 5 minutes. The samples were205
analyzed by Western blotting (rabbit anti-FLAG antibody, Life technologies).206
207
Co-immunoprecipitation (CO-IP) assay208
HEK293T cells were cultured in complete medium in 10 cm culture plates. Transfected209
cells (as specified in each experiment) were rinsed twice with cold PBS, and directly lysed210
on the plate by 1 ml cell lysis buffer (Beyotime, Jiangsu, China) containing the211
phosphatase/protease inhibitor cocktail. Co-IP was performed according to the212
manufacturer’s instructions (Dynabeads® Protein G Immunoprecipitation Kit, Life213
technologies). Briefly, aliquots of 100-μl cell lysate were saved at -20°C for loading214
control, and the other 800-μl lysate was added into mouse anti-MYC antibody (Sigma)215
pre-immobilized on protein G beads and incubated for 1 hour at room temperature. The216
11
beads were washed three times with PBS containing 0.1% Tween-20. Proteins bound to the217
beads were released by boiling in 20 μl 1X SDS loading buffer for 5 minutes. The samples218
were analyzed by Western blotting (rabbit anti-FLAG antibody, Life technologies). For219
CO-IP analysis with ORF119L-GFP co-expression, the 800-μl cell lysate was added to the220
pre-washed ANTI-FLAG M2 affinity gel (FLAG-Tagged Protein Immunoptrcipitation Kit;221
Sigma, Ronkonkoma, USA). The mixture of cell lysate and ANTI-FLAG resin was222
incubated for 4 hours (hrs) at 4°C on a rotating platform. The beads were washed for three223
times by 0.5 ml of 1x Wash Buffer (0.5 M Tris HCl, pH 7.4, with 1.5 M NaCl). Proteins224
bound to the beads were released by boiling for 5 minutes in 20 μl 1X SDS loading buffer.225
The samples were analyzed by Western blotting (mouse anti-MYC antibody, Sigma).226
227
Whole mount alkaline phosphatise (AP) staining228
Zebrafish embryos at 3 dpf were fixed in 4% para-formaldehyde (PFA) in PBS for 2 hrs at229
room temperature. Fixed embryos were dehydrated in methanol and stored overnight at230
-20°C. After permeabilization in acetone at -20°C for 30 mins, embryos were washed in231
PBS and were incubated in staining buffer for 45 mins as described (38, 39). Briefly, the232
staining reaction was started by adding 5 μL nitro blue233
tetrazolium/5-bromo-4-chloro-3-indolyl phosphate (NBT/BCIP, Roche: Basel,234
Switzerland) per milliliter of staining buffer, and stopped by washing in PBST buffer, 5235
mins for three times. The stained embryos were mounted in 70% glycerol and all images236
were captured using an OlympusDP71 digital camera mounted to an OLYMPUS MVX10237
fluorescence stereomicroscope (Olympus, Tokyo, Japan).238
239
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Hematoxylin-eosin (H&E) and transmission electron microscopy (TEM) analysis240
For H&E staining, samples were collected and treated as described (40). Samples were241
paraffin sectioned at 5 μm using a Leica RM2145 microtome, and then H&E staining was242
performed using standard protocol. For TEM, samples were dechorionated and fixed in243
Karnofsky’s fixative (2% paraformaldehyde, 2.5% glutaraldehyde, 5% sucrose, 0.1%244
CaCl2, in 0.2 M cacodylate buffer pH 7.2) overnight at 4°C. Samples were then washed245
three times with 0.1 M phosphate buffer for 1 h at 4°C, dehydrated in graduated ethanol246
series and embedded in Spurr’s resin. The blocks were sectioned and double-stained with247
uranyl acetate and lead citrate (41). The samples were examined under a Philips CM10248
electron microscope (Philips, Eindhoven, Netherlands).249
250
Whole mount RNA in situ hybridization251
Atrial natriuretic factor (anf) is a cardiac stretch-responsive gene, and used as a maker for252
development of zebrafish ventricle and atrium during early embryogenesis (21). Partial253
cDNA sequences of zebrafish anf were amplified by PCR and cloned into pGEM-T easy254
vector (Promega, Madison, WI, USA) as templates to generate an antisense riboprobe255
(DIG RNA Labelling Kit, Roche Applied Science, Germany) for in situ hybridization in256
the embryos (31). Briefly, embryos were incubated in 0.003% 1-phenyl-2-thiourea (PTU,257
Sigma, USA) to block pigmentation. Embryos were fixed at 4% PFA at room temperature258
for 4 hrs, and dehydrated in methanol at -20°C overnight. After pre-hybridization at 65°C259
for 6hrs, embryos were incubated with the anf antisense RNA probe (0.25 ng/μl) buffer at260
65°C overnight. After washing and blocking, the embryos were incubated in alkaline261
phosphatise conjugated sheep anti-digoxigenin Fab antibody at 4°C overnight. After262
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30mins washing for 4 times in PBS with 0.1% tween-20, the anf expression signal was263
detected by incubating in the NBT/BCIP substrates.264
265
Antisense morpholino oligonucleotides-mediated gene knockdown266
Morpholino oligonucleotides (MO) (Gene Tools, LLC, USA), an antisense technology267
used as a research tool for reverse genetics to knock down gene expression, have been268
successfully applied in zebrafish model (42, 43). Sequence of antisense MO targeting the269
translation initiation site (ATG) of zebrafish ILK (ILK-MO,270
3’-TACCTACTGTAGAAGTGAGTCACGG-5’) was injected into one-cell stage embryos271
(21, 44, 45). A standard control MO (Ctrl-MO) antisense oligonucleotide was injected at272
the same concentrations (27). Embryos were maintained in E3 medium at 28 °C until273
analyzed.274
275
Quantitative real-time PCR (qRT-PCR) assay276
Total RNA was extracted from thirty embryos of different treatments, and reverse277
transcribed into first strand cDNA as described previously (31, 46). The anf, nkx2.5, and278
cmlc2 specific primers (Table S1) were used to analyze their transcription quantitatively in279
different groups of embryos by a LightCycler480 System (Roche, Germany). The280
transcription of anf, nkx2.5, and cmlc2 were assayed in triplicate. The zebrafish GAPDH281
was used as house-keeping gene to normalize the starting RNA quantity. The fold change282
of gene transcription levels were calculated using the 2-ΔΔCt
relative quantification method.283
284
Statistical analysis285
14
The data were presented as means ± standard error of the mean (SEM). Student’s t-test was286
used to calculate the comparisons between groups of numerical data. Statistically287
significance were represented with asterisk (*, p<0.05, or **, p<0.01).288
289
Results290
Sequence of ORF119L resembles the dominant-negative form of ILK291
Through a genome-wide search for viral genes responsible for virus-host interactions that292
are critical to viral pathogenesis, we found several ankyrin-repeats containing genes in293
ISKNV. One of these genes, ISKNV ORF119L, 1371 base pairs (bp) long, is predicted to294
encode a protein of 456-amino acid (aa) residues with a predicted molecular weight of 50.1295
kDa. The BLAST analysis of ISKNV ORF119L revealed 30 highly similar sequences that296
are clustered with gene for ILK (Figure 1A). ISKNV ORF119L contains a three297
ankyrin-repeats domain (3ANK, 59-152aa) which is aligned with ILK of zebrafish, mouse,298
and human (Figure 1B). In zebrafish, mouse, and human ILK, a kinase domain is localised299
at the COOH-terminal end. However, in the COOH-terminus of ORF119L, only three300
separated ankyrin motifs were found without kinase domain (Figure 1B). The model301
structure of the 3ANK domain from ISKNV ORF119L (Figure 1C) shows high similarity to302
the 3ANK domain from human ILK (Figure 1D). The 3ANK of ISKNV ORF119L is 42%303
identical to those of ILK from zebrafish, 43% to mouse, and 43% to human (Figure 1E). In304
addition, ISKNV ORF119L shares an overall identity of 92% by the multiple sequence305
alignment analysis with an orthologous found in red sea bream iridovirus (RSIV), 93% in306
orange-spotted grouper iridovirus (OSGIV), and 92% in turbot reddish body iridovirus307
(TRBIV) (Figure 2A). Thus, ORF119L is evolutionarily conserved among308
15
megalocytiviruses including RSIV, OSGIV and TRBIV. All of these sequence analyses309
suggest that the viral 3ANK homologues might be unique among the megalocytiviruses,310
implying that they play a specific role in megalocytivirus pathogenesis. Specifically, we311
wanted to determine the functional consequence of ISKNV ORF119L expression in312
virus-host interactions.313
314
ORF119L directly interacts with PINCH to affect the PINCH-ILK interaction315
The NH2-terminal 3ANK domain of ILK is critical for its binding to the LIM domain of316
PINCH and the formation of PINCH-ILK-Parvin complex in a host (22). Since we found317
out the high similarity of 3ANK structure between the viral ORF119L and the host ILK, we318
hypothesized that ORF119L might directly bind to PINCH in virus-host interactions. An319
immunefluorescence microscopy analysis showed that zebrafish ILK and PINCH were320
co-localized in the cytoplasm in the absence of ORF119L in fish FHM cells (Figure 2B-2E).321
However, co-expression of viral ORF119L shifted PINCH to be co-localized with322
ORF119L in both cytoplasm and nucleus (Figure 2F-2I), suggesting that ORF119L might323
directly interact with PINCH.324
325
We performed a GST pull-down assay to explore the binding of ORF119L with PINCH326
(Figure 3A). Coomassie blue staining of SDS-PAGE showed the homogeneity of GST,327
GST-ILK, and GST-ORF119L proteins obtained by GST-tag affinity purification (Figure328
3A, panel 3). When GST, GST-ILK, or GST-ORF119L bound magnetic beads were329
respectively incubated with a cellular lysate containing FLAG-tagged PINCH proteins, we330
found that PINCH specifically bound to GST-ILK fusion protein (positive control) (Figure331
16
3A, lane 2, panel 2) or GST-ORF119L fusion protein (Figure 3A, lane 3, panel 2) but not to332
GST alone (negative control) (Figure 3A, lane 1, panel 2), demonstrating that viral333
ORF119L directly bound to the zebrafish PINCH.334
335
We further confirmed the above results with a mammalian expression system. We336
co-expressed the MYC-ORF119L and FLAG-PINCH in HEK293T cells, and then337
performed a CO-IP assay (Figure 3B). When incubating the cell lysates with the anti-MYC338
antibody pre-immobilized on protein G beads, we found that MYC-ORF119L specifically339
co-immunoprecipitated with FLAG-PINCH (Figure 3B, lane 3, panel 3), but not with other340
controls (Figure 3B, lane 1, lane 2, panel 3), confirming the direct binding of ORF119L341
with PINCH. Subsequently, we generated an ORF119L mutant lacking the342
3ANK-containing domain (designated as 119LΔ3ANK) to investigate the binding domain343
of ORF119L to PINCH by the CO-IP assay. Cell lysates containing FLAG-PINCH (Figure344
3C, lane 1), MYC-119LΔ3ANK (Figure 3C, lane 2), FLAG-PINCH + MYC-119LΔ3ANK345
(Figure 3C, lane 3), or FLAG-PINCH + MYC-ILK (Figure 3C, lane 4) fusion proteins346
were separately incubated with the anti-MYC antibody pre-immobilized protein G beads.347
We found that FLAG-PINCH was specifically co-immunoprecipitated with MYC-ILK348
(Figure 3C, lane 4, panel 3, as positive control), but not with the 119LΔ3ANK (Figure 3C,349
lane 3, panel 3), demonstrating that the deletion of 3ANK-containing domain abolished the350
ORF119L-PINCH interaction.351
352
We then tried to test whether ORF119L could affect the PINCH-ILK interaction in cells. A353
CO-IP assay was performed with co-expression of PINCH and ILK in cells in the absence354
17
or presence of ORF119L (Figure 3D). In the absence of ORF119L, cell lysates containing355
FLAG-PINCH, MYC-ILK, or FLAG-PINCH + MYC-ILK fusion proteins were separately356
incubated with anti-FLAG (M2) monoclonal antibody-conjugated agarose beads. After357
three washes to remove non-specific binding and then followed with anti-MYC antibody358
detection, we found that MYC-ILK was co-immunoprecipitated with FLAG-PINCH in the359
sample containing FLAG-PINCH and MYC-ILK (Figure 3D, lane 3, left panel 3), but not360
in the FLAG-PINCH alone (Figure 3D, lane1, left panel 3), or MYC-ILK alone (Figure 3D,361
lane 2, left panel 3), demonstrating that PINCH interacts with ILK. However, in the362
presence of ORF119L in the same system as above, when ORF119L expression was363
increased (Figure 3D, lanes 4-6, right panel 1), the bound MYC-ILK fusion proteins was364
decreased (Figure 3D, lane 4-5, right panel 4) and diminished (Figure 3D, lane 6, right365
panel 4). This suggests that FLAG-PINCH binding to MYC-ILK was attenuated with the366
escalated levels of ORF119L expression, implying that ISKNV ORF119L competed with367
ILK for binding PINCH in a dose-dependent manner. To test the specificity of the368
competitive binding effect of ISKKV ORF119L, we performed the PINCH-ILK CO-IP369
assay in the presence of 119LΔ3ANK mutant. Importantly, when co-expression of370
119LΔ3ANK mutant was increased (Figure 3E, panel 1), the bound FLAG-PINCH fusion371
proteins was not affected (Figure 3E, panel 4), demonstrating that the 3ANK-containing372
domain is critical for the competitive binding activity of ORF119L to PINCH.373
374
ORF119L overexpression affects zebrafish embryogenesis375
To explore the functions of ORF119L in vivo, we microinjected a recombinant plasmid376
expressing ORF119L-EGFP into wild-type zebrafish embryos while using an empty vector377
18
as a control. While the mock vector-injected embryos did not show any phenotypic378
abnormality from 4 hpf (hours post fertilization) to 4 dpf (days post fertilization) (Figure379
4A-4F), the ORF119L-EGFP-injected embryos developed normally at 4 hpf (Figure 4G),380
12 hpf (Figure 4H), and 1 dpf (Figure 4I). However, pericardial edema (Figure 4J, arrow)381
and opaque yolk sac phenotype (Figure 4K, asterisk) were evident at 2 dpf and 3 dpf,382
respectively, in the ORF119L-EGFP-injected embryos. These embryos became less active383
at 4 dpf (Figure 4L), and most of them were dead at 5 dpf (data not shown). In contrast,384
embryos overexpressing the 119LΔ3ANK mutant were relatively normal from 4 hpf to 4385
dpf (Figure 4M-4R). We observed GFP expression among the mock vector control,386
ORF119L-EGFP and 119LΔ3ANK-EGFP expressing embryos at 12 hpf (Figure 4S-4U),387
indicating that ORF119L expression contributed to the abnormal embryogenesis. In388
ORF119L expressing embryos at 3 dpf, we found statistically significant developmental389
defects of cardiac edema (Figure 4V, mock, 4.58% ± 2.18%; ORF119L, 79.79% ± 6.93%;390
p=0.005), opaque yolk (Figure 4W, mock, 4.80% ± 1.79%; ORF119L, 83.12% ± 3.51%;391
p=7E-04), and slow blood cells circulation (Figure 4X, mock, 3.56% ± 0.37%; ORF119L,392
81.65% ± 3.76%; p=9E-04). In contrast, these defects were significantly reduced in393
119LΔ3ANK-expressing embryos (Figure 4V-4X).394
395
ORF119L overexpression disturbs embryonic angiogenesis in zebrafish396
Previous reports show that ILK is crucial for the vascular basement membrane397
development during certain angiogenic sprouting (47, 48). Thus, we tested whether398
ORF119L could affect the embryonic angiogenesis. An RFP-ORF119L (Red Fluorescent399
Protein-tagged ORF119L) expressing plasmid was microinjected into Tg (flk1:GFP)400
19
transgenic zebrafish embryos (GFP expression is driven by the vascular endothelium cells401
specific promoter flk1). Compared to the normal conformation of intersegmental vessel402
(ISV) in mock vector-injected embryos at 3 dpf (Figure 5A), ISV was severely disrupted in403
ORF119L expressing embryos (Figure 5B). In a whole mount AP staining assay,404
pronephric duct (PD), subintestinal vessels (SIV), and posterior cardinal veins (PCV) were405
normal in the control embryos (Figure 5C-D, and 5G-H). However, overexpressing406
ORF119L led to the absence of SIV and PCV but no effects on PD (Figure 5E-F, and 5I-J).407
In contrast, embryos expressing 119LΔ3ANK mutant did not show any ISV defects408
(Figure 5K and 5L).409
410
ORF119L overexpression induces cardiac defects in zebrafish411
ORF119L over-expressing embryos make evident pericardial edema and stretched heart,412
which are highly similar to the abnormal phenotype of zebrafish ILKL308P
kinase-dead413
mutant (21, 49). This led us to perform the histological and ultra-cellular analysis to414
delineate the detailed cardiac defects in ORF119L embryos. In an H&E staining assay, the415
structure of ventricle and atrium were normal in mock vector control embryos (Figure 6A416
and 6C). However, a stretched heart (Figure 6B), an enlarged pericardial cavity (Figure 6D,417
PC) and a thinner ventricular wall (Figure 6D, arrowheads) were clearly observed in418
ORF119L expressing embryos. In a TEM analysis of the embryonic ventricle, sarcomeric419
structure was clearly found in mock control embryos (Figure 6E, S*), whereas it became420
sparse and immature in ORF119L expressing embryos (Figure 6F, S*). Distinct Z-disk, A421
band, and I band in the sarcomere were shown in the mock control embryos (Figure 6G). In422
contrast, sarcomeric Z-disk was disappeared in ORF119L expressing embryos (Figure 6H).423
20
Intriguingly, similar disruption of sarcomeric Z-disk was also found in the mandarin fish424
cardiomyocytes after 5 days (Figure 7E-F) and 7 days (Figure 7G-H) post ISKNV425
infection.426
427
ORF119L overexpression resembles the effect of ILK inhibition428
All of above results prompted us to speculate a mechanism by which the ISKNV429
ORF119L-induced abnormal phenotype might ascribe to dysfunctional ILK signaling. We430
blockaded the endogenous ILK expression, either by expressing the dominant-negative431
form of ILK (ILK-DN) or by injecting ILK antisense morpholino oligo (ILK-MO). While432
the heart development in the standard control MO (Ctrl-MO)-injected embryos (Figure433
8A), as well as the mock vector-injected and 119LΔ3ANK-overexpressing embryos (as434
shown in Figure 4A-4F and 4M-4R) were relatively normal at 3 dpf, However; inhibition435
of endogenous ILK by either ILK-DN overexpression (Figure 8G, arrowhead), or by436
ILK-MO injection (Figure 8J, arrowhead), resulted in evident pericardial edema similar to437
the pattern found in ORF119L-expressing embryos (Figure 8D, arrowhead, and 8M).438
Because the heart beating rate was hard to quantify by using our experimental device, here439
we used atrial natriuretic factor (anf) (21) as a marker of heart development in the whole440
mount in situ hybridization analysis. While anf transcription was normal in ventricle (v)441
and atrium (a) in Ctrl-MO-injected embryos at 2 dpf (Figure 8B) and 3 dpf (Figure 8C), anf442
transcription was impaired in ORF119L expressing embryos (Figure 8E-F), ILK-DN443
expressing embryos (Figure 8H-I), and ILK-MO expressing embryos (Figure 8K-L),444
respectively. Besides, the percentage of the cardiac edema was similar among the445
ORF119L-overexpressing, ILK-DN-overexpressing, and ILK-MO-injected embryos at 3446
21
dpf (Figure 8M). Furthermore, phosphorylation of AKT, a downstream effector of ILK,447
was decreased in ORF119L expressing embryos (Figure 8N). Compared with the448
Ctrl-MO-injected embryos, ORF119L-overexpressing, ILK-DN-overexpressing, and449
ILK-MO-injected embryos showed decreased transcription of the cardiac markers anf450
(Figure 8O), as well as nkx2.5 (Figure 8P), and cmlc2 (Figure 8Q) by the qRT-PCR assay,451
demonstrating that ORF119L may affect the cardiac function.452
453
Discussion454
In this study, we identified a three ankyrin-repeats domain-containing protein (ISKNV455
ORF119L) from a megalocytivirus. In vitro studies show that ORF119L directly interacts456
with zebrafish PINCH and affects the binding of PINCH to ILK. In vivo studies show that457
overexpression of ORF119L in zebrafish predominantly affect angiogenic and cardiac458
system. Phosphorylation of AKT, a downstream effector of ILK, was decreased in459
ORF119L overexpressing embryos. Intriguingly, ISKNV infection alters the cardiac460
sarcomeric structure of mandarin fish. Besides, ORF119L-induced phenotypes are similar461
to the abnormality derived from the expression of dominant-negative ILK kinase-dead462
mutant in zebrafish.463
464
When a mutant subunit of a multi-subunit complex is co-expressed with a functionally465
related wild-type protein, a dysfunctional complex is formed due to the dominant-negative466
inhibitory (DNI) effect (50, 51). The DNI phenomenon has been reported in mammals,467
such as the wild-type p53 inhibited by ΔNp73 (52), NF-κB inhibited by IκBm (53), C/EBP468
inhibited by CHOP (54), and promyelocytic leukemia zinc finger protein (PLZF) inhibited469
22
by AML-1/ETO fusion protein (34). Viral DNI factors also have been reported, such as the470
human cytomegalovirus-derived truncated unique short 3 (US3) isoform (55),471
Epstein-Barr virus EBNA-1 (56). In this study, we demonstrate that escalated expression of472
ISKNV ORF119L attenuates the PINCH-ILK interaction, affects the cardiomyocytes473
development in zebrafish and decreases the AKT phosphorylation. In fact, we further show474
that the 119LΔ3ANK mutant did not bind to PINCH and the escalated expression of475
119LΔ3ANK mutant did not show the competitive binding effect on the PINCH-ILK476
interaction. Moreover, overexpression of the 119LΔ3ANK mutant in vivo did not affect the477
embryonic morphology and their cardiovascular system, consolidating that the ILK-like478
dominant-negative inhibiting effect of ISKNV ORF119L is due to the 3ANK-containing479
domain. Therefore, we propose that ISKNV ORF119L as a novel ILK-like480
dominant-negative inhibitor most likely due to the fact that ISKNV ORF119L contains a481
3ANK-containig domain and lacks the kinase domain of ILK.482
483
ILK-mediated PINCH/AKT signal transduction functions as the cardiac mechanical stretch484
sensor machinery and plays a crucial role for contractility in the zebrafish heart (21, 57). In485
an ethylnitros-urea (ENU) mutagenesis screening, Garnet Bendig and colleagues identified486
a main squeeze (msq) zebrafish mutant, which contains a point mutation (L308P) in the487
kinase domain of ILK. The msq ILKL308P
mutation leads to reduced ILK kinase activity and488
cardiac defects in zebrafish embryos (21). In line with these findings, we show that489
ORF119L is a three ankyrin-repeats domain-containing protein without kinase domain.490
Overexpression of ORF119L induces a stretched heart in zebrafish. In addition, we showed491
reduced expression of cardiac marker anf by WISH and qRT-PCR assay (not significant in492
23
qRT-PCR assay because of the variation of the triplicate experiments) in493
ORF119L-overexpressing embryos. Likewise, additional cardiac markers such as nkx2.5494
and cmlc2 were consistently and significantly reduced after ORF119L overexpression,495
providing the evidence that ORF119L may affect the cardiac function. We hypothesized496
that the cardiac defects may result from disrupting the ILK-PINCH interaction thereby497
decreasing the phosphorylation of AKT. In fact, both ILK and PINCH localise at the498
sarcomeric Z-disk in the zebrafish heart and skeletal muscle (21, 57), and are pivotal for the499
sarcomeric cytoarchitecture and Z-disk integrity (58). In keeping with these, we also show500
the disorganized sarcomere and disintegrated Z-disk of cardiomyocytes in501
ORF119L-expressing embryos. Intriguingly, ISKNV infection leads to the disordered502
sarcomere and Z-disk in the mandarin fish cardiomyocyte, providing a potential503
explanation for low vitality in mandarin fish showing accelerated breathing and dyspnea as504
shown previously (59). Taken together, our studies on ORF119L might provide novel505
insights into the pathogenesis of ISKNV infection.506
507
The complex formed by PINCH-ILK-Parvin provides crucial physical linkages between508
integrins and the actin cytoskeleton for transducing diverse signals from extracellular509
matrix to intracellular effectors (60). In this study, we demonstrated that ORF119L510
attenuates the binding of PINCH to ILK and induces cardiomyocytes defects in zebrafish.511
However, it remains to be determined for the effects of ORF119L on the function of Parvin512
and on the function of spleen or kidney necrosis.513
514
Acknowledgement515
24
We sincerely thank Dr. Zi-Liang Wang, Dr. Xiao-Peng Xu, Dr. Jun-Feng Xie, Dr. Jing516
Wang for technical assistance; Dr. Chuan-Fu Dong for providing the ISKNV virus and fish517
cell lines, Ms. Qiu-Ling Liang for help in cell culture, and Mr. Hai-Bin Liu for careful518
zebrafish maintenance. We wish to thank Prof. Wen-qing Zhang (Southern Medical519
University, Guangzhou, China) for providing the zebrafish line. This work was supported520
by the National Natural Science Foundation of China under Grant (No.31330080,521
No.31322056, and No.31370048), the National Basic Research Program of China522
(973Program) (No.2012CB114402), the Guangdong Natural Science Foundation523
(No.S2013010012161), the Pearl River Nova Program of Guangzhou (No.2014J2200055),524
the Foundation for Yong Teacher (No.20130171220009), and the Doctoral student525
innovative talent training projects of the Sun Yat-sen University.526
527
25
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32
Table 1. Summary of primers used in this study.701
Designation Primers sequence (5’-3’) *
Plasmid microinjection
pORF119L-EGFP-F CGGAATTCATGCCTGTACATGGGTGTGT
pORF119L-EGFP-R CGGGATCCTCGCCTTGTGTTCTGTTTT
pRFP-ORF119L-F CGGGATCCATGCCTGTACATGGGTGTGT
pRFP-ORF119L-R CGGAATTCTCGCCTTGTGTTCTGTTTT
pILK3ANK-EGFP-F CGGAATTCATGGATGACATCTTCACTCAG
pILK3ANK-EGFP-R CGGGATCCAGGGACTTTTGACAGG
p119LΔ3ANK-EGFP-F CGGAATTCTATGGACCTGCGGGCAGT
p119LΔ3ANK-EGFP-R CGGGATCCTCGCCTTGTGTTCTGTTTT
Mammalian cell expression vector
pMYC-ORF119L-F CGGAATTCAATGCCTGTACATGGGTGT
pMYC-ORF119L-R CGGGATCCTCATCGCCTTGTGTTCT
pMYC-ILK-F CGGAATTCAATGGATGACATCTTCACTCAG
pMYC-ILK-R CGGGATCCTTATTTGTCTTGCATCTTCTC
pFLAG-PINCH-F CGGAATTCAATGCTGGGGGTGTCAG
pFLAG-PINCH-R CGGGATCCTTACTTGCGGCCCA
pMYC-119LΔ3ANK-F CGGAATTCAATGGACCTGCGGGCAGT
pMYC-119LΔ3ANK-R CGGGATCCTTATCGCCTTGTGTTCTGTTTT
GST fusion constructs
pGST-119L-F CGGGATCCATGCCTGTACATGG
pGST-119L-R CGGAATTCTCGCCTTGTGTTCTGTT
pGST-ILK-F CGGGATCCATGGATGACATCTTCACT
pGST-ILK-R CGGAATTCTTTGTCTTGCATCTTCTCCAG
Whole mount in situ hybridization of anf
33
Note: * Underlining letters are the cleavage site of restriction endonuclease.702
703
pGEM-T-anf-F GACAGTCTTAATCAGGGGGCCGGTA
pGEM-T-anf-R TGGGAGCCAACGTTGAGATTTTTTCCAATC
qRT-PCR
anf-QF GACGGATGTACAAGCGCACACGTTGAG
anf-QR CGGTGTTGCTGTCTTCATAATCTACGGCTC
nkx2.5-QF TTCACCTACAACACCTACCCTGCGTTTAGT
nkx2.5-QR TGGATGCTGGACATGCTCGACGGATAG
cmlc2-QF GCAGCATATCTCAAGAGCCAAGGACCAG
cmlc2-QR CTCAGCACCCATCACTGTTCCGTTTCC
34
Figure legends704
Figure 1. Sequence similarity alignment of ORF119L with dominant-negative form of705
ILK. (A) Phylogenetic tree analysis of ORF119L orthologues (top 30 identical) from706
NCBI zebrafish protein database. Genebank accession numbers of proteins (based on the707
order) are as follow: XP_005157118.1; NP_001186697.1; XP_005161412.1;708
XP_697378.6; XP_001920876.2; XP_003199303.2; XP_005158347.1; XP_001920092.1;709
NP_899192.1; XP_689875.3; XP_005167841.1; XP_005167842.1; XP_005167840.1;710
XP_003200555.2; NP_001018164.1; XP_689244.2; XP_005166638.1; XP_005156096.1;711
NP_001093460.1; XP_002663935.3; XP_001920231.2; XP_005165903.1;712
XP_005165902.1; XP_005160666.1; XP_696390.3; NP_001020714.1; NP_991159.1;713
XP_002666119.1; XP_001923751.2; AAL98843, and NP_956865.1. (B) Analysis of the714
three ankyrin-repeats-containing domain of ISKNV ORF119L and ILK proteins from715
zebrafish (zILK, GenBank accession AAH56593), mouse (mILK, GenBank accession716
NP_001155196) and human (hILK, GenBank accession CAG28601) by SMART program717
(http://smart.embl-heidelberg.de). Compared to zILK, mILK, and hILK, the718
COOH-terminus of ISKNV ORF119L lacks a kinase domain. The numbers indicate the719
position of amino acid residues. (C-D) The model structures of 119L3ANK (C) and720
hILK3ANK (D) domain were generated using the SWISS-MODEL Workspace. (E)721
Multiple sequence alignment of the three ankyrin-repeats-containing domain of ISKNV722
ORF119L, zebrafish, mouse, and human was performed by using the ClustalW program723
with default setting. Abbreviation: 3ANK, the three ankyrin-repeats domain.724
725
Figure 2. Conservation of ORF119L among megalocytiviruses, and alteration of726
35
cellular distribution of PINCH by co-expression of ORF119L. (A) ISKNV ORF119L727
(GenBank accession AAL98843) and the three ankyrin-repeats domain-containing728
proteins from orange-spotted grouper iridovirus (OSGIV) (GenBank accession729
AAX82423), turbot reddish body iridovirus (TRBIV) (GenBank accession ADE34453),730
red sea bream iridovirus (RSIV) (GenBank accession BAK14289) and rock bream731
iridovirus (RBIV) (GenBank accession AFR68193) were used for a multiple sequence732
alignment analysis with default setting (http://www.ebi.ac.uk/Tools/msa/clustalw2/). (B-I)733
Immunofluorescent microscopy for co-transfection of MYC-ILK + FLAG-PINCH (B-E),734
and MYC-ORF119L + FLAG-PINCH (F-I) plasmids in FHM fish cells for735
immunofluorescence analysis. Alexa fluor 555- (ILK and ORF119L in red colour) or 488-736
(PINCH in green colour) conjugated secondary antibodies were applied for the detection.737
Abbreviation: ANKP, predicted three ankyrin-repeats domain-containing protein.738
739
Figure 3. ORF119 interacts with PINCH to affect the PINCH-ILK interaction. (A) In740
GST pull-down assay, the expression of FLAG-PINCH fusion proteins from transfected741
HEK293T cells were detected by anti-FLAG antibody Western blotting. After incubating742
with the GST, GST-ILK, and GST-ORF119L bound beads, the associated FLAG-PINCH743
fusion proteins were detected by anti-FLAG antibody Western blotting. The purity of GST,744
GST-ILK, and GST-ORF119L was examined by Coomassie blue staining of SDS-PAGE.745
(B-C) In co-immunoprecipitation assay, plasmids [B: (pFLAG-PINCH + pc-Myc-CMV-2;746
pFLAG-CMV-2 + pMYC-ORF119L; and pFLAG-PINCH + pMYC-ORF119L,747
respectively); C: (pFLAG-PINCH + pc-Myc-CMV-2; pFLAG-CMV-2 +748
pMYC-119LΔ3ANK; pFLAG-PINCH + pMYC-119LΔ3ANK; and pFLAG-PINCH +749
36
pMYC-ILK, respectively)] were co-transfected into HEK293T cells. The expression of750
MYC-ORF119L, MYC-ILK and FLAG-PINCH fusion proteins was examined by751
anti-MYC and anti-FLAG antibodies Western blotting respectively. After incubating with752
the anti-MYC antibody bound protein G beads, the associated FLAG-PINCH fusion753
proteins were examined by anti-FLAG antibody Western blotting. GAPDH was used as the754
loading control. (D-E) In the co-immunoprecipitation assay, plasmids (pFLAG-PINCH +755
pc-Myc-CMV-2; pFLAG-CMV-2 + pMYC-ILK; and pFLAG-PINCH + pMYC-ILK) was756
co-transfected with pORF119L-EGFP (D, right panel 4-6) or p119LΔ3ANK-EGFP (E,757
panel 1-3), respectively. The expression of ORF119L-GFP, 119LΔ3ANK-GFP,758
FLAG-PINCH, and MYC-ILK were detected by anti-GFP, anti-PINCH, and anti-MYC759
antibodies respectively. After incubating with the ANTI-FLAG M2 affinity gel (D) or760
anti-MYC antibody bound protein G beads (E), the associated MYC-ILK (D) or761
FLAG-PINCH (E) fusion proteins were examined by anti-MYC (D) or anti-FLAG (E)762
antibody Western blotting, respectively. β-actin (D) and GAPDH (E) was used as the763
loading control, respectively.764
765
Figure 4. ORF119L overexpression perturbs zebrafish embryogenesis. Morphology of766
mock vector-injected (A-F), ORF119L-overexpressing (G-L) and767
119LΔ3ANK-overexpressing (M-R) embryos from 4 hpf (hours post fertilization) to 4 dpf768
(days post fertilization). Abnormal phenotypes were found in ISKNV769
ORF119L-overexpressing embryos (G-L). A black arrow indicates pericardial edema and a770
white asterisk is for opaque yolk sac abnormality. (S-U) GFP expression in mock vector-,771
pORF119L-EGFP-, or p119LΔ3ANK-EGFP-injected embryos at 12 hpf. (V-X).772
37
Percentage of embryos showing cardiac edema (V), opaque yolk sas (W), and slow blood773
circulation (X) phenotype at 3 dpf. Scale bars=500 μm.774
775
Figure 5. ORF119L overexpression affects angiogenesis in zebrafish embryos. (A-B)776
The ISV structure was examined in the Tg(flk1:GFP) transgenic embryos. The ISV777
development was normal in mock vector-injected embryos (A), whereas disorganized ISV778
was found after ORF119L over-expression (B) at 3 dpf. (C-J) Whole mount AP staining779
showing the vessels development in mock control (C, D, G and H) and780
ORF119L-overexpressing (E, F, I and J) embryos at 3 dpf. SIV was impaired after781
ORF119L over-expression. (K-L) ISV structure was normal in 119LΔ3ANK-expressing782
embryos at 3 dpf. Abbreviation: ISV, intersegmental vessel; PCV, posterior cardinal vein;783
DA, dorsal aorta; PD, pronephric duct; SIV, subintestinal vessel. Scale bars=500 μm in784
A-F. Scale bars=200 μm in c-f.785
786
Figure 6. ORF119L overexpression results in cardiac defects in zebrafish. (A-D)787
Paraffin section and H&E staining in mock control (A and C) and788
ORF119L-overexpressing (B and D) embryos at 3 dpf. The arrowheads indicate the789
ventricular wall. (E-H) TEM assay detecting the ultra-cellular structure of ventricle muscle790
in mock control (E and G) and ORF119L-overexpressing embryos (F and H) at 3 dpf.791
Images in C, D, G and H showed higher magnifications of the boxed areas in A, B, E and F,792
respectively. Abbreviation: PC, pericardial cavity; v, ventricle; a, atrium; S*, sarcomeric793
structure. Bars=500 μm in A-B, 100 μm in C-D, 2 μm in E-F, and 500 nm in G-H.794
795
38
Figure 7. ISKNV infection disrupted the sarcomeric Z-disk of cardiomyocyte in796
mandarin fish. The structure of sarcomere and Z-disk of cardiac muscle in PBS-injected797
control (A-B), and ISKNV-infected mandarin fish at 3 (C-D), 5 (E-F), and 7 (G-H) days798
post infection. Images of B, D, F, and H are higher magnifications of the boxed areas in A,799
C, E, and G. Abbreviation: S*, sarcomeric structure.800
801
Figure 8. ORF119L overexpression resembles the effect of ILK inhibition. (A-L)802
Developmental morphology and whole mount in situ hybridization of anf in Ctrl-MO803
control embryos (A-C), ORF119L-overexpressing embryos (D-F), ILK-DN-expressing804
embryos (G-I), and ILK-MO-injected embryos (J-L). Arrowheads indicate the pericardial805
edema. (M) Percentage of embryos showing pericardial edema in806
ORF119L-overexpressing, ILK-DN-overexpressing, and ILK-MO-injected embryos at 3807
dpf. (N) Fifty old embryos were collected and lysed by using RIPA lysis buffer containing808
the phosphatase/protease inhibitor cocktail (Merck). Western blotting was performed to809
examine the phosphorylation of AKT (Ser473) and total AKT in mock control and810
ORF119L-overexpressing embryos at 3dpf. The relative level of p-AKT and total AKT811
were calculated by normalizing to their corresponding GAPDH (Quantity One 4.6.2812
software program). (O-Q) Quantitative RT-PCR showing the fold change of anf (O),813
nkx2.5 (P), and cmlc2 (Q) transcription in Ctrl-MO-injected, ORF119L-overexpressing,814
ILK-DN-overexpressing, and ILK-MO-injected embryos at 3 dpf. Abbreviation: v,815
ventricle; a, atrium. Scale bars=500 μm for A, D, G, and J, and 100 μm for B, C, E, F, H, I,816
K, and L.817
818
39
Figure 1819
820
821
822
40
Figure 2823
824
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826
41
Figure 3827
828
829
830
831
832
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834
835
42
Figure 4836
837
838
839
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43
Figure 5845
846
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Figure 6855
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Figure 7857
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Figure 8859
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JVI.01955-14.full

  • 1. 1 Interaction of Infectious Spleen and Kidney Necrosis Virus ORF119L with PINCH1 Leads to Dominant-Negative Inhibition of ILK and Cardiovascular Defects in2 Zebrafish3 4 Running title: A Dominant-Negative Inhibitor of ILK from Iridovirus5 6 Ji-Min Yuan 1, *, Bai-Liang He 1, *, Lu-Yun Yang 1 , Chang-Jun Guo 1, 2 , Shao-Ping Weng 1, 7 2 , Shengwen Calvin Li 3 , and Jian-Guo He 1, 2, # 8 9 1 MOE Key Laboratory of Aquatic Product Safety / State Key Laboratory of Biocontrol,10 School of Life Sciences, Sun Yat-sen University, 135 Xingang Road West, Guangzhou11 510275, China.12 2 School of Marine Sciences, Sun Yat-sen University, 135 Xingang Road West,13 Guangzhou 510275, China.14 3 CHOC Children’s Hospital, University of California Irvine, Orange, CA 92868, USA15 * These authors contributed equally to this work.16 17 # Corresponding Author: Dr. Jian-Guo He18 State Key Laboratory of Biocontrol, School of Life Science; Key Laboratory of Aquatic19 Food Safety, the Ministry of Education, School of Marine Sciences, Sun Yat-sen University,20 Guangzhou 510275, China.21 Tel.: +86 20 39332988; Fax: +86 20 3933284922 Email: lsshjg@mail.sysu.edu.cn23 24 JVI Accepts, published online ahead of print on 29 October 2014 J. Virol. doi:10.1128/JVI.01955-14 Copyright © 2014, American Society for Microbiology. All Rights Reserved.
  • 2. 2 Abstract25 Infectious spleen and kidney necrosis virus (ISKNV) is the type species of the26 Megalocytivirus genus, Iridoviridae family, causing a severe systemic disease with high27 mortality to mandarin fish (Siniperca chuatsi) in China and South-East Asia. Up to now,28 the pathogenesis of ISKNV infection is still not fully understood. Based on a genome-wide29 bioinformatics analysis of ISKNV-encoded proteins, we found that ISKNV open reading30 frame 119L (ORF119L) is predicted to encode a three ankyrin-repeats (3ANK)31 domain-containing protein, which shows high similarity to the dominant-negative form of32 integrin-linked kinase (ILK), i.e., viral ORF119L lacks the ILK kinase domain. Thus, we33 speculated that viral ORF119L might affect the host ILK complex. Here, we demonstrated34 that viral ORF119L directly interacts with particularly interesting Cys-His-rich protein35 (PINCH) and affects the host ILK-PINCH interaction in vitro in Fathead minnow (FHM)36 cells. In vivo ORF119L overexpression in zebrafish (Danio rerio) embryos resulted in37 myocardial dysfunctions with disintegration of sarcomeric Z-disk. Importantly, ORF119L38 overexpression in zebrafish highly resembles the phenotype of endogenous ILK inhibition,39 either by over-expressing a dominant-negative form of ILK or by injecting an ILK40 antisense morpholino. Intriguingly, ISKNV-infected mandarin fish develop disorganized41 sarcomeric Z-disk in cardiomyocytes. Furthermore, phosphorylation of AKT, a42 downstream effector of ILK, was remarkably decreased in ORF119L overexpressing43 zebrafish embryos. As such, we show that ISKNV ORF119L acts as a domain-negative44 inhibitor of the host ILK, providing a novel mechanism for the megalocytivirus45 pathogenesis.46 47
  • 3. 3 IMPORTANCE: Our work is the first to show the role of a dominant-negative inhibitor of48 the host ILK from ISKNV (an Iridovirus). Mechanistically, the viral ORF119L directly49 binds to the host PINCH, attenuates the host PINCH-ILK interaction, and thus impairs the50 ILK signalling. Intriguingly, ORF119L-overexpressing zebrafish embryos and51 ISKNV-infected mandarin fish develop similar disordered sarcomeric Z-disk in52 cadiomyocytes. These findings provide a novel mechanism for megalocytivirus53 pathogenesis.54 55
  • 4. 4 Introduction56 Infectious spleen and kidney necrosis virus (ISKNV) is the type species of the57 Megalocytivirus genus, Iridoviridae family. ISKNV and closely related isolates infect a58 wide range of marine and freshwater fish species, including mandarin fish (Siniperca59 chuatsi) (1), orange-spotted grouper (Epinephelus coioides) (2), large yellow croaker60 (Larimichthys crocea) (3), Aplocheilichthys normani (4), turbot (Scophthalmus maximus),61 zebrafish (Danio rerio) (5), and more than 50 species of marine fish (6). In China, ISKNV62 causes a serious disease with high mortality in mandarin fish, leading to economic loss and63 ecological problems. To control the virus, we started the viral pathogenesis study by64 sequencing ISKNV genome.65 66 In this study, we found that ISKNV open reading frame 119L (ORF119L) is predicted to67 encode an ankyrin-repeat-containing protein but without the kinase domain. The68 NH2-terminal three ankyrin-repeats (3ANK)-containing domain of ORF119L is highly69 similar to that of integrin-linked kinase (ILK). The myxoma virus M-T5 (7, 8), myxoma70 nuclear factor (MNF) (9), poxvirus ankyrin-repeats proteins (10, 11), vaccinia virus K1L71 protein (12), and ISKNV ORF124L (13) have this ankyrin-repeat-containing domain. All72 of these proteins have been reported to be involved in viral pathogenesis.73 74 In the host ILK signalling, ILK complexes with particularly interesting Cys-His-rich75 protein (PINCH) and Parvin, and plays a crucial role in the cell-adhesion and intracellular76 signal transduction (14, 15). Structurally, the NH2-terminus of ILK is a 3ANK-containing77 domain capable of binding to the LIM1 domain of PINCH (16-19), while the78
  • 5. 5 COOH-terminus of ILK contains a kinase domain responsible for interacting with Parvin.79 Functionally, ILK phosphorylates protein kinase B (PKB, also known as AKT) and80 glycogen synthase kinase 3 (GSK-3) for intracellular signal transduction (18). Mice with81 the germ line mutated ILK in which Val(386) and Thr(387) in the kinase domain are82 substituted with glycine residues (ILK-VT/GG) dies of vasculogenesis defects at83 embryonic day 12.5 due to the fact that VT/GG substitutions decrease ILK protein stability84 leading to decreased ILK levels and reduced binding to paxillin and α-parvin (20). Heart85 failure and pericardial edema phenotypes are found in zebrafish expressing ILKL308P 86 (kinase-dead mutant) during early embryogenesis (21). In mammalian cells,87 overexpression of the 3ANK domain of ILK without its kinase domain disrupts the88 assembly of the PINCH-ILK-Parvin complex, exerting its dominant-negative inhibitory89 (DNI) effect on ILK-mediated signalling (22, 23).90 91 All of these prompted us to hypothesize that ORF119L may play a role in the host ILK92 signalling. We studied the function of ORF119L in vivo by using the zebrafish model93 because we could observe the rapid embryonic development of zebrafish and manipulate94 its embryos outside of the parental animal (24-26). Furthermore, zebrafish have been used95 to study the viral gene function and pathogenesis of ISKNV as previously described96 (27-31). Here, we demonstrated that ORF119L interacts with PINCH and affects the97 binding of ILK to PINCH, which leads to cardiovascular defects in zebrafish likely derived98 from its ability to reduce ILK-mediated AKT phosphorylation. Consistent with this,99 inhibiting the endogenous zebrafish ILK effectively mimics ORF119L-induced abnormal100 phenotype. Taken together, our data suggest that ISKNV ORF119L may function as a novel101
  • 6. 6 DNI-like factor of ILK.102 103 Materials and Methods104 Collection of ISKNV-infected fish and isolation of viral DNA105 The moribund mandarin fish showing the common symptom of ISKNV infection were106 collected and kept at -80°C. ISKNV infection in mandarin fish, virus purification, and viral107 DNA extraction (Universal Genomic DNA Extraction Kit Ver.3.0, TaKaRa, Dalian, China)108 were performed as described previously (5, 27).109 110 Zebrafish maintenance, plasmid construction and micro-injection111 A zebrafish transgenic line, Tg (flk1:GFP) expressing an green fluorescence protein (GFP)112 that is driven by the zebrafish flk1(also known as vascular endothelial growth factor113 receptor) promoter was used with the Wild-type zebrafish as the control group. All114 zebrafish were maintained at 28°C as previously described (31). Zebrafish embryos were115 kept in E3 zebrafish water containing 5.0 mM NaCl, 0.17 mM KCl, 0.33 mM CaCl2, 0.33116 mM MgSO4, pH=7.4 at 28.5°C and their developmental stages were defined as hour117 post-fertilization (hpf) or day post-fertilization (dpf) (27, 32). To construct the plasmids for118 micro-injection in zebrafish embryos, the full-length of ISKNV ORF119L was PCR119 amplified (Primers in Table. 1) using the ISKNV genomic DNA. The PCR products were120 subcloned into the pDsRed2-C1 (Takara Bio Company, Clontech; Mountain View, CA) to121 generate the RFP-ORF119L expressing plasmid pRFP-ORF119L. Similarly, the ORF119L122 PCR products were subcloned into the pEGFP-N3 vector (Clontech; Mountain View, CA)123 to generate the ORF119L-EGFP expressing plasmid pORF119L-EGFP. The124
  • 7. 7 RFP-ORF119L or ORF119L-EGFP overexpressing embryos were simply named as125 ORF119L embryos hereafter. To over-express the ORF119L mutant lacking the126 3ANK-containing domain (119LΔ3ANK), the 119LΔ3ANK sequence was PCR amplified127 and subcloned into the pEGFP-N3 plasmid to generate the 119LΔ3ANK-EGFP expressing128 plasmid p119LΔ3ANK-EGFP. The zebrafish first strand cDNA was synthesized as129 previously described (31). To over-express the 3ANK domain of ILK (ILK3ANK),130 zebrafish ILK3ANK sequence (without the ILK kinase domain) was PCR amplified from131 zebrafish cDNA, and then subcloned into the pEGFP-N3 vector to generate the132 ILK3ANK-EGFP expressing plasmid pILK3ANK-EGFP. All plasmids and inserts were133 confirmed by bi-direction sequencing. The protocol of plasmids micro-injection and image134 capture was described previously (31). Briefly, the plasmids were linearized and purified135 (QIAquick PCR Purification Kit, USA), and resuspended in water at 100 ng/ul. Plasmids136 were micro-injected (IM300 Microinjector, Narishige, Japan) into one-cell stage zebrafish137 embryos at 1 nl per embryo. Embryos were captured at different developmental stages138 using an OlympusDP71 digital camera mounted onto an OLYMPUS MVX10 fluorescence139 stereomicroscope.140 141 Bioinformatics analysis142 A BLAST (Basic Local Alignment Search Tool) (33) search was performed to compare the143 ISKNV ORF119L protein sequence to the NCBI (National Center for Biotechnology144 Information) zebrafish protein database (39495 reference sequence). Phylogenetic tree145 analysis was performed using the Fast Minimum Evolution method (34). Domains feature146 from different proteins were analyzed by SMART program147
  • 8. 8 (http://smart.embl-heidelberg.de/) (35). The model structure of the proteins were generated148 using the SWISS-MODEL Workspace (http://swissmodel.expasy.org/workspace/) (36).149 Multiple sequence alignments were performed as described previously150 (http://www.ebi.ac.uk/Tools/clustalw) (37).151 152 Immunofluorescence staining153 To examine the intracellular distribution of PINCH in the presence or absence of ORF119L,154 MYC-ORF119L, MYC-ILK, and FLAG-PINCH fusion protein expressing plasmids were155 constructed. The full-length of ORF119L and 119LΔ3ANK was PCR amplified (Primers in156 Table. 1) by using the ISKNV genomic DNA, and subcloned into pc-Myc-CMV-2 vector157 (SIGMA; Ronkonkoma, NY, USA) to generate the MYC-ORF119L and158 MYC-119LΔ3ANK expressing plasmid pMYC-ORF119L and pMYC-119LΔ3ANK,159 respectively. The full-length of zebrafish ILK and PINCH was PCR amplified (Primers in160 Table. 1) by using the zebrafish cDNA, subcloned into pc-Myc-CMV-2 and161 pFLAG-CMV-2 vector (SIGMA; Ronkonkoma, NY, USA) to generate the MYC-ILK162 expressing plasmid pMYC-ILK and FLAG-PINCH expressing plasmid pFLAG-PINCH,163 respectively. Fathead minnow (FHM) cells were cultured on coverslips, and transfected164 with pMYC-ORF119L, pMYC-ILK, and pFLAG-PINCH (as specified in each165 experiment). One day post-transfection, the samples were fixed by methanol for 30166 minutes at 4°C. After washing in three changes of PBS and blocking (PBS with 10%167 normal blocking serum), samples were incubated with 1:500 diluted primary antibodies168 (rabbit anti-FLAG antibody and mouse anti-MYC antibody, Sigma) overnight at 4°C.169 After washing for 3 times, the cells were incubated in 1:500 diluted secondary antibodies170
  • 9. 9 [Alexa Fluor 488 Goat Anti-Mouse IgG (H+L) antibody, and Alexa Fluor 555 Goat171 Anti-Rabbit IgG (H+L) antibody, Life technologies] for 1 hour at room temperature in the172 dark. Heochst 33342 was then applied for nucleus staining. After rinsing for 5 times in PBS,173 cells were examined under ZEISS LSM7 DUO NLO confocal microscope.174 175 GST pull-down assay176 The full-length of zebrafish ILK, and ISKNV ORF119L were PCR amplified (Primers in177 Table. 1) and subcloned into pGEX-4T-1 vector (GE Healthcare) to generate the GST-ILK178 expressing plasmid pGST-ILK, and GST-ORF119L expressing plasmid pGST-ORF119L,179 respectively. Plasmid pGEX-4T-1, pGST-ILK, and pGST-ORF119L were transformed into180 Escherichia coli (E. coli) BL21 cells to express GST, GST-ILK, and GST-ORF119L,181 respectively. Human embryonic kidney 293T (HEK293T) cells were cultured in182 Dulbecco’s Modified Eagle’ Medium with 10% fetal bovine serum at 5% CO2. Plasmid183 pFLAG-PINCH was transfected (Lipofectamine 2000, Life Technologies) into HEK293T184 cells (cultured in 10 cm plate) to express the FLAG-PINCH fusion proteins. GST185 pull-down assays were performed as described previously (31), according to the186 manufacturer's instructions (MagneGSTTM Pull-Down System, Promega, Madison, WI,187 USA). Briefly, 1 ml GST, GST-ILK, and GST-ORF119L expressing BL21 bacterial cells188 were harvested, lysed by 200 μl of MagneGSTTM Cell Lysis Reagent, incubated for 30189 minutes on a rotating platform, and then precleared lysats were added into the tube190 containing the pre-equilibrated MagneGSTTM Glutathione particles (20 μl for each sample).191 After incubating for 30 minutes at room temperature, the GST control, GST-ILK, and192 GST-ORF119L immobilized particles were captured by a magnet stand; the particles were193
  • 10. 10 then washed by MagneGSTTM Binding/Wash Buffer for 5 minutes at three times, and194 resuspended in 20 μl MagneGSTTM Binding/Wash Buffer. Aliquots of 5 μl of particles195 bound to the GST control, GST-ILK, GST-ORF119L fusion protein, respectively, were196 saved for analysis of the specificity and efficiency of immobilization by Coomassie197 staining of SDS-PAGE. The FLAG-PINCH expressing HEK293T cells were lysed by 1 ml198 cell lysis buffer (Beyotime, Jiangsu, China) containing the phosphatase/protease inhibitor199 cocktail. 100 μl cell lysate was saved at -20°C for loading control, and the other 800 μl was200 added into the GST control, GST-ILK, and GST-ORF119L pre-immobilized particles,201 respectively, and incubated for 1hour at room temperature on a rotating platform.202 Non-specific binding was removed by washing in 400 μl MagneGSTTM Binding/Wash203 Buffer for 5 minutes at five times. Finally, the FLAG-PINCH bound to particles were204 released by boiling in 20 μl 1X SDS loading buffer for 5 minutes. The samples were205 analyzed by Western blotting (rabbit anti-FLAG antibody, Life technologies).206 207 Co-immunoprecipitation (CO-IP) assay208 HEK293T cells were cultured in complete medium in 10 cm culture plates. Transfected209 cells (as specified in each experiment) were rinsed twice with cold PBS, and directly lysed210 on the plate by 1 ml cell lysis buffer (Beyotime, Jiangsu, China) containing the211 phosphatase/protease inhibitor cocktail. Co-IP was performed according to the212 manufacturer’s instructions (Dynabeads® Protein G Immunoprecipitation Kit, Life213 technologies). Briefly, aliquots of 100-μl cell lysate were saved at -20°C for loading214 control, and the other 800-μl lysate was added into mouse anti-MYC antibody (Sigma)215 pre-immobilized on protein G beads and incubated for 1 hour at room temperature. The216
  • 11. 11 beads were washed three times with PBS containing 0.1% Tween-20. Proteins bound to the217 beads were released by boiling in 20 μl 1X SDS loading buffer for 5 minutes. The samples218 were analyzed by Western blotting (rabbit anti-FLAG antibody, Life technologies). For219 CO-IP analysis with ORF119L-GFP co-expression, the 800-μl cell lysate was added to the220 pre-washed ANTI-FLAG M2 affinity gel (FLAG-Tagged Protein Immunoptrcipitation Kit;221 Sigma, Ronkonkoma, USA). The mixture of cell lysate and ANTI-FLAG resin was222 incubated for 4 hours (hrs) at 4°C on a rotating platform. The beads were washed for three223 times by 0.5 ml of 1x Wash Buffer (0.5 M Tris HCl, pH 7.4, with 1.5 M NaCl). Proteins224 bound to the beads were released by boiling for 5 minutes in 20 μl 1X SDS loading buffer.225 The samples were analyzed by Western blotting (mouse anti-MYC antibody, Sigma).226 227 Whole mount alkaline phosphatise (AP) staining228 Zebrafish embryos at 3 dpf were fixed in 4% para-formaldehyde (PFA) in PBS for 2 hrs at229 room temperature. Fixed embryos were dehydrated in methanol and stored overnight at230 -20°C. After permeabilization in acetone at -20°C for 30 mins, embryos were washed in231 PBS and were incubated in staining buffer for 45 mins as described (38, 39). Briefly, the232 staining reaction was started by adding 5 μL nitro blue233 tetrazolium/5-bromo-4-chloro-3-indolyl phosphate (NBT/BCIP, Roche: Basel,234 Switzerland) per milliliter of staining buffer, and stopped by washing in PBST buffer, 5235 mins for three times. The stained embryos were mounted in 70% glycerol and all images236 were captured using an OlympusDP71 digital camera mounted to an OLYMPUS MVX10237 fluorescence stereomicroscope (Olympus, Tokyo, Japan).238 239
  • 12. 12 Hematoxylin-eosin (H&E) and transmission electron microscopy (TEM) analysis240 For H&E staining, samples were collected and treated as described (40). Samples were241 paraffin sectioned at 5 μm using a Leica RM2145 microtome, and then H&E staining was242 performed using standard protocol. For TEM, samples were dechorionated and fixed in243 Karnofsky’s fixative (2% paraformaldehyde, 2.5% glutaraldehyde, 5% sucrose, 0.1%244 CaCl2, in 0.2 M cacodylate buffer pH 7.2) overnight at 4°C. Samples were then washed245 three times with 0.1 M phosphate buffer for 1 h at 4°C, dehydrated in graduated ethanol246 series and embedded in Spurr’s resin. The blocks were sectioned and double-stained with247 uranyl acetate and lead citrate (41). The samples were examined under a Philips CM10248 electron microscope (Philips, Eindhoven, Netherlands).249 250 Whole mount RNA in situ hybridization251 Atrial natriuretic factor (anf) is a cardiac stretch-responsive gene, and used as a maker for252 development of zebrafish ventricle and atrium during early embryogenesis (21). Partial253 cDNA sequences of zebrafish anf were amplified by PCR and cloned into pGEM-T easy254 vector (Promega, Madison, WI, USA) as templates to generate an antisense riboprobe255 (DIG RNA Labelling Kit, Roche Applied Science, Germany) for in situ hybridization in256 the embryos (31). Briefly, embryos were incubated in 0.003% 1-phenyl-2-thiourea (PTU,257 Sigma, USA) to block pigmentation. Embryos were fixed at 4% PFA at room temperature258 for 4 hrs, and dehydrated in methanol at -20°C overnight. After pre-hybridization at 65°C259 for 6hrs, embryos were incubated with the anf antisense RNA probe (0.25 ng/μl) buffer at260 65°C overnight. After washing and blocking, the embryos were incubated in alkaline261 phosphatise conjugated sheep anti-digoxigenin Fab antibody at 4°C overnight. After262
  • 13. 13 30mins washing for 4 times in PBS with 0.1% tween-20, the anf expression signal was263 detected by incubating in the NBT/BCIP substrates.264 265 Antisense morpholino oligonucleotides-mediated gene knockdown266 Morpholino oligonucleotides (MO) (Gene Tools, LLC, USA), an antisense technology267 used as a research tool for reverse genetics to knock down gene expression, have been268 successfully applied in zebrafish model (42, 43). Sequence of antisense MO targeting the269 translation initiation site (ATG) of zebrafish ILK (ILK-MO,270 3’-TACCTACTGTAGAAGTGAGTCACGG-5’) was injected into one-cell stage embryos271 (21, 44, 45). A standard control MO (Ctrl-MO) antisense oligonucleotide was injected at272 the same concentrations (27). Embryos were maintained in E3 medium at 28 °C until273 analyzed.274 275 Quantitative real-time PCR (qRT-PCR) assay276 Total RNA was extracted from thirty embryos of different treatments, and reverse277 transcribed into first strand cDNA as described previously (31, 46). The anf, nkx2.5, and278 cmlc2 specific primers (Table S1) were used to analyze their transcription quantitatively in279 different groups of embryos by a LightCycler480 System (Roche, Germany). The280 transcription of anf, nkx2.5, and cmlc2 were assayed in triplicate. The zebrafish GAPDH281 was used as house-keeping gene to normalize the starting RNA quantity. The fold change282 of gene transcription levels were calculated using the 2-ΔΔCt relative quantification method.283 284 Statistical analysis285
  • 14. 14 The data were presented as means ± standard error of the mean (SEM). Student’s t-test was286 used to calculate the comparisons between groups of numerical data. Statistically287 significance were represented with asterisk (*, p<0.05, or **, p<0.01).288 289 Results290 Sequence of ORF119L resembles the dominant-negative form of ILK291 Through a genome-wide search for viral genes responsible for virus-host interactions that292 are critical to viral pathogenesis, we found several ankyrin-repeats containing genes in293 ISKNV. One of these genes, ISKNV ORF119L, 1371 base pairs (bp) long, is predicted to294 encode a protein of 456-amino acid (aa) residues with a predicted molecular weight of 50.1295 kDa. The BLAST analysis of ISKNV ORF119L revealed 30 highly similar sequences that296 are clustered with gene for ILK (Figure 1A). ISKNV ORF119L contains a three297 ankyrin-repeats domain (3ANK, 59-152aa) which is aligned with ILK of zebrafish, mouse,298 and human (Figure 1B). In zebrafish, mouse, and human ILK, a kinase domain is localised299 at the COOH-terminal end. However, in the COOH-terminus of ORF119L, only three300 separated ankyrin motifs were found without kinase domain (Figure 1B). The model301 structure of the 3ANK domain from ISKNV ORF119L (Figure 1C) shows high similarity to302 the 3ANK domain from human ILK (Figure 1D). The 3ANK of ISKNV ORF119L is 42%303 identical to those of ILK from zebrafish, 43% to mouse, and 43% to human (Figure 1E). In304 addition, ISKNV ORF119L shares an overall identity of 92% by the multiple sequence305 alignment analysis with an orthologous found in red sea bream iridovirus (RSIV), 93% in306 orange-spotted grouper iridovirus (OSGIV), and 92% in turbot reddish body iridovirus307 (TRBIV) (Figure 2A). Thus, ORF119L is evolutionarily conserved among308
  • 15. 15 megalocytiviruses including RSIV, OSGIV and TRBIV. All of these sequence analyses309 suggest that the viral 3ANK homologues might be unique among the megalocytiviruses,310 implying that they play a specific role in megalocytivirus pathogenesis. Specifically, we311 wanted to determine the functional consequence of ISKNV ORF119L expression in312 virus-host interactions.313 314 ORF119L directly interacts with PINCH to affect the PINCH-ILK interaction315 The NH2-terminal 3ANK domain of ILK is critical for its binding to the LIM domain of316 PINCH and the formation of PINCH-ILK-Parvin complex in a host (22). Since we found317 out the high similarity of 3ANK structure between the viral ORF119L and the host ILK, we318 hypothesized that ORF119L might directly bind to PINCH in virus-host interactions. An319 immunefluorescence microscopy analysis showed that zebrafish ILK and PINCH were320 co-localized in the cytoplasm in the absence of ORF119L in fish FHM cells (Figure 2B-2E).321 However, co-expression of viral ORF119L shifted PINCH to be co-localized with322 ORF119L in both cytoplasm and nucleus (Figure 2F-2I), suggesting that ORF119L might323 directly interact with PINCH.324 325 We performed a GST pull-down assay to explore the binding of ORF119L with PINCH326 (Figure 3A). Coomassie blue staining of SDS-PAGE showed the homogeneity of GST,327 GST-ILK, and GST-ORF119L proteins obtained by GST-tag affinity purification (Figure328 3A, panel 3). When GST, GST-ILK, or GST-ORF119L bound magnetic beads were329 respectively incubated with a cellular lysate containing FLAG-tagged PINCH proteins, we330 found that PINCH specifically bound to GST-ILK fusion protein (positive control) (Figure331
  • 16. 16 3A, lane 2, panel 2) or GST-ORF119L fusion protein (Figure 3A, lane 3, panel 2) but not to332 GST alone (negative control) (Figure 3A, lane 1, panel 2), demonstrating that viral333 ORF119L directly bound to the zebrafish PINCH.334 335 We further confirmed the above results with a mammalian expression system. We336 co-expressed the MYC-ORF119L and FLAG-PINCH in HEK293T cells, and then337 performed a CO-IP assay (Figure 3B). When incubating the cell lysates with the anti-MYC338 antibody pre-immobilized on protein G beads, we found that MYC-ORF119L specifically339 co-immunoprecipitated with FLAG-PINCH (Figure 3B, lane 3, panel 3), but not with other340 controls (Figure 3B, lane 1, lane 2, panel 3), confirming the direct binding of ORF119L341 with PINCH. Subsequently, we generated an ORF119L mutant lacking the342 3ANK-containing domain (designated as 119LΔ3ANK) to investigate the binding domain343 of ORF119L to PINCH by the CO-IP assay. Cell lysates containing FLAG-PINCH (Figure344 3C, lane 1), MYC-119LΔ3ANK (Figure 3C, lane 2), FLAG-PINCH + MYC-119LΔ3ANK345 (Figure 3C, lane 3), or FLAG-PINCH + MYC-ILK (Figure 3C, lane 4) fusion proteins346 were separately incubated with the anti-MYC antibody pre-immobilized protein G beads.347 We found that FLAG-PINCH was specifically co-immunoprecipitated with MYC-ILK348 (Figure 3C, lane 4, panel 3, as positive control), but not with the 119LΔ3ANK (Figure 3C,349 lane 3, panel 3), demonstrating that the deletion of 3ANK-containing domain abolished the350 ORF119L-PINCH interaction.351 352 We then tried to test whether ORF119L could affect the PINCH-ILK interaction in cells. A353 CO-IP assay was performed with co-expression of PINCH and ILK in cells in the absence354
  • 17. 17 or presence of ORF119L (Figure 3D). In the absence of ORF119L, cell lysates containing355 FLAG-PINCH, MYC-ILK, or FLAG-PINCH + MYC-ILK fusion proteins were separately356 incubated with anti-FLAG (M2) monoclonal antibody-conjugated agarose beads. After357 three washes to remove non-specific binding and then followed with anti-MYC antibody358 detection, we found that MYC-ILK was co-immunoprecipitated with FLAG-PINCH in the359 sample containing FLAG-PINCH and MYC-ILK (Figure 3D, lane 3, left panel 3), but not360 in the FLAG-PINCH alone (Figure 3D, lane1, left panel 3), or MYC-ILK alone (Figure 3D,361 lane 2, left panel 3), demonstrating that PINCH interacts with ILK. However, in the362 presence of ORF119L in the same system as above, when ORF119L expression was363 increased (Figure 3D, lanes 4-6, right panel 1), the bound MYC-ILK fusion proteins was364 decreased (Figure 3D, lane 4-5, right panel 4) and diminished (Figure 3D, lane 6, right365 panel 4). This suggests that FLAG-PINCH binding to MYC-ILK was attenuated with the366 escalated levels of ORF119L expression, implying that ISKNV ORF119L competed with367 ILK for binding PINCH in a dose-dependent manner. To test the specificity of the368 competitive binding effect of ISKKV ORF119L, we performed the PINCH-ILK CO-IP369 assay in the presence of 119LΔ3ANK mutant. Importantly, when co-expression of370 119LΔ3ANK mutant was increased (Figure 3E, panel 1), the bound FLAG-PINCH fusion371 proteins was not affected (Figure 3E, panel 4), demonstrating that the 3ANK-containing372 domain is critical for the competitive binding activity of ORF119L to PINCH.373 374 ORF119L overexpression affects zebrafish embryogenesis375 To explore the functions of ORF119L in vivo, we microinjected a recombinant plasmid376 expressing ORF119L-EGFP into wild-type zebrafish embryos while using an empty vector377
  • 18. 18 as a control. While the mock vector-injected embryos did not show any phenotypic378 abnormality from 4 hpf (hours post fertilization) to 4 dpf (days post fertilization) (Figure379 4A-4F), the ORF119L-EGFP-injected embryos developed normally at 4 hpf (Figure 4G),380 12 hpf (Figure 4H), and 1 dpf (Figure 4I). However, pericardial edema (Figure 4J, arrow)381 and opaque yolk sac phenotype (Figure 4K, asterisk) were evident at 2 dpf and 3 dpf,382 respectively, in the ORF119L-EGFP-injected embryos. These embryos became less active383 at 4 dpf (Figure 4L), and most of them were dead at 5 dpf (data not shown). In contrast,384 embryos overexpressing the 119LΔ3ANK mutant were relatively normal from 4 hpf to 4385 dpf (Figure 4M-4R). We observed GFP expression among the mock vector control,386 ORF119L-EGFP and 119LΔ3ANK-EGFP expressing embryos at 12 hpf (Figure 4S-4U),387 indicating that ORF119L expression contributed to the abnormal embryogenesis. In388 ORF119L expressing embryos at 3 dpf, we found statistically significant developmental389 defects of cardiac edema (Figure 4V, mock, 4.58% ± 2.18%; ORF119L, 79.79% ± 6.93%;390 p=0.005), opaque yolk (Figure 4W, mock, 4.80% ± 1.79%; ORF119L, 83.12% ± 3.51%;391 p=7E-04), and slow blood cells circulation (Figure 4X, mock, 3.56% ± 0.37%; ORF119L,392 81.65% ± 3.76%; p=9E-04). In contrast, these defects were significantly reduced in393 119LΔ3ANK-expressing embryos (Figure 4V-4X).394 395 ORF119L overexpression disturbs embryonic angiogenesis in zebrafish396 Previous reports show that ILK is crucial for the vascular basement membrane397 development during certain angiogenic sprouting (47, 48). Thus, we tested whether398 ORF119L could affect the embryonic angiogenesis. An RFP-ORF119L (Red Fluorescent399 Protein-tagged ORF119L) expressing plasmid was microinjected into Tg (flk1:GFP)400
  • 19. 19 transgenic zebrafish embryos (GFP expression is driven by the vascular endothelium cells401 specific promoter flk1). Compared to the normal conformation of intersegmental vessel402 (ISV) in mock vector-injected embryos at 3 dpf (Figure 5A), ISV was severely disrupted in403 ORF119L expressing embryos (Figure 5B). In a whole mount AP staining assay,404 pronephric duct (PD), subintestinal vessels (SIV), and posterior cardinal veins (PCV) were405 normal in the control embryos (Figure 5C-D, and 5G-H). However, overexpressing406 ORF119L led to the absence of SIV and PCV but no effects on PD (Figure 5E-F, and 5I-J).407 In contrast, embryos expressing 119LΔ3ANK mutant did not show any ISV defects408 (Figure 5K and 5L).409 410 ORF119L overexpression induces cardiac defects in zebrafish411 ORF119L over-expressing embryos make evident pericardial edema and stretched heart,412 which are highly similar to the abnormal phenotype of zebrafish ILKL308P kinase-dead413 mutant (21, 49). This led us to perform the histological and ultra-cellular analysis to414 delineate the detailed cardiac defects in ORF119L embryos. In an H&E staining assay, the415 structure of ventricle and atrium were normal in mock vector control embryos (Figure 6A416 and 6C). However, a stretched heart (Figure 6B), an enlarged pericardial cavity (Figure 6D,417 PC) and a thinner ventricular wall (Figure 6D, arrowheads) were clearly observed in418 ORF119L expressing embryos. In a TEM analysis of the embryonic ventricle, sarcomeric419 structure was clearly found in mock control embryos (Figure 6E, S*), whereas it became420 sparse and immature in ORF119L expressing embryos (Figure 6F, S*). Distinct Z-disk, A421 band, and I band in the sarcomere were shown in the mock control embryos (Figure 6G). In422 contrast, sarcomeric Z-disk was disappeared in ORF119L expressing embryos (Figure 6H).423
  • 20. 20 Intriguingly, similar disruption of sarcomeric Z-disk was also found in the mandarin fish424 cardiomyocytes after 5 days (Figure 7E-F) and 7 days (Figure 7G-H) post ISKNV425 infection.426 427 ORF119L overexpression resembles the effect of ILK inhibition428 All of above results prompted us to speculate a mechanism by which the ISKNV429 ORF119L-induced abnormal phenotype might ascribe to dysfunctional ILK signaling. We430 blockaded the endogenous ILK expression, either by expressing the dominant-negative431 form of ILK (ILK-DN) or by injecting ILK antisense morpholino oligo (ILK-MO). While432 the heart development in the standard control MO (Ctrl-MO)-injected embryos (Figure433 8A), as well as the mock vector-injected and 119LΔ3ANK-overexpressing embryos (as434 shown in Figure 4A-4F and 4M-4R) were relatively normal at 3 dpf, However; inhibition435 of endogenous ILK by either ILK-DN overexpression (Figure 8G, arrowhead), or by436 ILK-MO injection (Figure 8J, arrowhead), resulted in evident pericardial edema similar to437 the pattern found in ORF119L-expressing embryos (Figure 8D, arrowhead, and 8M).438 Because the heart beating rate was hard to quantify by using our experimental device, here439 we used atrial natriuretic factor (anf) (21) as a marker of heart development in the whole440 mount in situ hybridization analysis. While anf transcription was normal in ventricle (v)441 and atrium (a) in Ctrl-MO-injected embryos at 2 dpf (Figure 8B) and 3 dpf (Figure 8C), anf442 transcription was impaired in ORF119L expressing embryos (Figure 8E-F), ILK-DN443 expressing embryos (Figure 8H-I), and ILK-MO expressing embryos (Figure 8K-L),444 respectively. Besides, the percentage of the cardiac edema was similar among the445 ORF119L-overexpressing, ILK-DN-overexpressing, and ILK-MO-injected embryos at 3446
  • 21. 21 dpf (Figure 8M). Furthermore, phosphorylation of AKT, a downstream effector of ILK,447 was decreased in ORF119L expressing embryos (Figure 8N). Compared with the448 Ctrl-MO-injected embryos, ORF119L-overexpressing, ILK-DN-overexpressing, and449 ILK-MO-injected embryos showed decreased transcription of the cardiac markers anf450 (Figure 8O), as well as nkx2.5 (Figure 8P), and cmlc2 (Figure 8Q) by the qRT-PCR assay,451 demonstrating that ORF119L may affect the cardiac function.452 453 Discussion454 In this study, we identified a three ankyrin-repeats domain-containing protein (ISKNV455 ORF119L) from a megalocytivirus. In vitro studies show that ORF119L directly interacts456 with zebrafish PINCH and affects the binding of PINCH to ILK. In vivo studies show that457 overexpression of ORF119L in zebrafish predominantly affect angiogenic and cardiac458 system. Phosphorylation of AKT, a downstream effector of ILK, was decreased in459 ORF119L overexpressing embryos. Intriguingly, ISKNV infection alters the cardiac460 sarcomeric structure of mandarin fish. Besides, ORF119L-induced phenotypes are similar461 to the abnormality derived from the expression of dominant-negative ILK kinase-dead462 mutant in zebrafish.463 464 When a mutant subunit of a multi-subunit complex is co-expressed with a functionally465 related wild-type protein, a dysfunctional complex is formed due to the dominant-negative466 inhibitory (DNI) effect (50, 51). The DNI phenomenon has been reported in mammals,467 such as the wild-type p53 inhibited by ΔNp73 (52), NF-κB inhibited by IκBm (53), C/EBP468 inhibited by CHOP (54), and promyelocytic leukemia zinc finger protein (PLZF) inhibited469
  • 22. 22 by AML-1/ETO fusion protein (34). Viral DNI factors also have been reported, such as the470 human cytomegalovirus-derived truncated unique short 3 (US3) isoform (55),471 Epstein-Barr virus EBNA-1 (56). In this study, we demonstrate that escalated expression of472 ISKNV ORF119L attenuates the PINCH-ILK interaction, affects the cardiomyocytes473 development in zebrafish and decreases the AKT phosphorylation. In fact, we further show474 that the 119LΔ3ANK mutant did not bind to PINCH and the escalated expression of475 119LΔ3ANK mutant did not show the competitive binding effect on the PINCH-ILK476 interaction. Moreover, overexpression of the 119LΔ3ANK mutant in vivo did not affect the477 embryonic morphology and their cardiovascular system, consolidating that the ILK-like478 dominant-negative inhibiting effect of ISKNV ORF119L is due to the 3ANK-containing479 domain. Therefore, we propose that ISKNV ORF119L as a novel ILK-like480 dominant-negative inhibitor most likely due to the fact that ISKNV ORF119L contains a481 3ANK-containig domain and lacks the kinase domain of ILK.482 483 ILK-mediated PINCH/AKT signal transduction functions as the cardiac mechanical stretch484 sensor machinery and plays a crucial role for contractility in the zebrafish heart (21, 57). In485 an ethylnitros-urea (ENU) mutagenesis screening, Garnet Bendig and colleagues identified486 a main squeeze (msq) zebrafish mutant, which contains a point mutation (L308P) in the487 kinase domain of ILK. The msq ILKL308P mutation leads to reduced ILK kinase activity and488 cardiac defects in zebrafish embryos (21). In line with these findings, we show that489 ORF119L is a three ankyrin-repeats domain-containing protein without kinase domain.490 Overexpression of ORF119L induces a stretched heart in zebrafish. In addition, we showed491 reduced expression of cardiac marker anf by WISH and qRT-PCR assay (not significant in492
  • 23. 23 qRT-PCR assay because of the variation of the triplicate experiments) in493 ORF119L-overexpressing embryos. Likewise, additional cardiac markers such as nkx2.5494 and cmlc2 were consistently and significantly reduced after ORF119L overexpression,495 providing the evidence that ORF119L may affect the cardiac function. We hypothesized496 that the cardiac defects may result from disrupting the ILK-PINCH interaction thereby497 decreasing the phosphorylation of AKT. In fact, both ILK and PINCH localise at the498 sarcomeric Z-disk in the zebrafish heart and skeletal muscle (21, 57), and are pivotal for the499 sarcomeric cytoarchitecture and Z-disk integrity (58). In keeping with these, we also show500 the disorganized sarcomere and disintegrated Z-disk of cardiomyocytes in501 ORF119L-expressing embryos. Intriguingly, ISKNV infection leads to the disordered502 sarcomere and Z-disk in the mandarin fish cardiomyocyte, providing a potential503 explanation for low vitality in mandarin fish showing accelerated breathing and dyspnea as504 shown previously (59). Taken together, our studies on ORF119L might provide novel505 insights into the pathogenesis of ISKNV infection.506 507 The complex formed by PINCH-ILK-Parvin provides crucial physical linkages between508 integrins and the actin cytoskeleton for transducing diverse signals from extracellular509 matrix to intracellular effectors (60). In this study, we demonstrated that ORF119L510 attenuates the binding of PINCH to ILK and induces cardiomyocytes defects in zebrafish.511 However, it remains to be determined for the effects of ORF119L on the function of Parvin512 and on the function of spleen or kidney necrosis.513 514 Acknowledgement515
  • 24. 24 We sincerely thank Dr. Zi-Liang Wang, Dr. Xiao-Peng Xu, Dr. Jun-Feng Xie, Dr. Jing516 Wang for technical assistance; Dr. Chuan-Fu Dong for providing the ISKNV virus and fish517 cell lines, Ms. Qiu-Ling Liang for help in cell culture, and Mr. Hai-Bin Liu for careful518 zebrafish maintenance. We wish to thank Prof. Wen-qing Zhang (Southern Medical519 University, Guangzhou, China) for providing the zebrafish line. This work was supported520 by the National Natural Science Foundation of China under Grant (No.31330080,521 No.31322056, and No.31370048), the National Basic Research Program of China522 (973Program) (No.2012CB114402), the Guangdong Natural Science Foundation523 (No.S2013010012161), the Pearl River Nova Program of Guangzhou (No.2014J2200055),524 the Foundation for Yong Teacher (No.20130171220009), and the Doctoral student525 innovative talent training projects of the Sun Yat-sen University.526 527
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  • 32. 32 Table 1. Summary of primers used in this study.701 Designation Primers sequence (5’-3’) * Plasmid microinjection pORF119L-EGFP-F CGGAATTCATGCCTGTACATGGGTGTGT pORF119L-EGFP-R CGGGATCCTCGCCTTGTGTTCTGTTTT pRFP-ORF119L-F CGGGATCCATGCCTGTACATGGGTGTGT pRFP-ORF119L-R CGGAATTCTCGCCTTGTGTTCTGTTTT pILK3ANK-EGFP-F CGGAATTCATGGATGACATCTTCACTCAG pILK3ANK-EGFP-R CGGGATCCAGGGACTTTTGACAGG p119LΔ3ANK-EGFP-F CGGAATTCTATGGACCTGCGGGCAGT p119LΔ3ANK-EGFP-R CGGGATCCTCGCCTTGTGTTCTGTTTT Mammalian cell expression vector pMYC-ORF119L-F CGGAATTCAATGCCTGTACATGGGTGT pMYC-ORF119L-R CGGGATCCTCATCGCCTTGTGTTCT pMYC-ILK-F CGGAATTCAATGGATGACATCTTCACTCAG pMYC-ILK-R CGGGATCCTTATTTGTCTTGCATCTTCTC pFLAG-PINCH-F CGGAATTCAATGCTGGGGGTGTCAG pFLAG-PINCH-R CGGGATCCTTACTTGCGGCCCA pMYC-119LΔ3ANK-F CGGAATTCAATGGACCTGCGGGCAGT pMYC-119LΔ3ANK-R CGGGATCCTTATCGCCTTGTGTTCTGTTTT GST fusion constructs pGST-119L-F CGGGATCCATGCCTGTACATGG pGST-119L-R CGGAATTCTCGCCTTGTGTTCTGTT pGST-ILK-F CGGGATCCATGGATGACATCTTCACT pGST-ILK-R CGGAATTCTTTGTCTTGCATCTTCTCCAG Whole mount in situ hybridization of anf
  • 33. 33 Note: * Underlining letters are the cleavage site of restriction endonuclease.702 703 pGEM-T-anf-F GACAGTCTTAATCAGGGGGCCGGTA pGEM-T-anf-R TGGGAGCCAACGTTGAGATTTTTTCCAATC qRT-PCR anf-QF GACGGATGTACAAGCGCACACGTTGAG anf-QR CGGTGTTGCTGTCTTCATAATCTACGGCTC nkx2.5-QF TTCACCTACAACACCTACCCTGCGTTTAGT nkx2.5-QR TGGATGCTGGACATGCTCGACGGATAG cmlc2-QF GCAGCATATCTCAAGAGCCAAGGACCAG cmlc2-QR CTCAGCACCCATCACTGTTCCGTTTCC
  • 34. 34 Figure legends704 Figure 1. Sequence similarity alignment of ORF119L with dominant-negative form of705 ILK. (A) Phylogenetic tree analysis of ORF119L orthologues (top 30 identical) from706 NCBI zebrafish protein database. Genebank accession numbers of proteins (based on the707 order) are as follow: XP_005157118.1; NP_001186697.1; XP_005161412.1;708 XP_697378.6; XP_001920876.2; XP_003199303.2; XP_005158347.1; XP_001920092.1;709 NP_899192.1; XP_689875.3; XP_005167841.1; XP_005167842.1; XP_005167840.1;710 XP_003200555.2; NP_001018164.1; XP_689244.2; XP_005166638.1; XP_005156096.1;711 NP_001093460.1; XP_002663935.3; XP_001920231.2; XP_005165903.1;712 XP_005165902.1; XP_005160666.1; XP_696390.3; NP_001020714.1; NP_991159.1;713 XP_002666119.1; XP_001923751.2; AAL98843, and NP_956865.1. (B) Analysis of the714 three ankyrin-repeats-containing domain of ISKNV ORF119L and ILK proteins from715 zebrafish (zILK, GenBank accession AAH56593), mouse (mILK, GenBank accession716 NP_001155196) and human (hILK, GenBank accession CAG28601) by SMART program717 (http://smart.embl-heidelberg.de). Compared to zILK, mILK, and hILK, the718 COOH-terminus of ISKNV ORF119L lacks a kinase domain. The numbers indicate the719 position of amino acid residues. (C-D) The model structures of 119L3ANK (C) and720 hILK3ANK (D) domain were generated using the SWISS-MODEL Workspace. (E)721 Multiple sequence alignment of the three ankyrin-repeats-containing domain of ISKNV722 ORF119L, zebrafish, mouse, and human was performed by using the ClustalW program723 with default setting. Abbreviation: 3ANK, the three ankyrin-repeats domain.724 725 Figure 2. Conservation of ORF119L among megalocytiviruses, and alteration of726
  • 35. 35 cellular distribution of PINCH by co-expression of ORF119L. (A) ISKNV ORF119L727 (GenBank accession AAL98843) and the three ankyrin-repeats domain-containing728 proteins from orange-spotted grouper iridovirus (OSGIV) (GenBank accession729 AAX82423), turbot reddish body iridovirus (TRBIV) (GenBank accession ADE34453),730 red sea bream iridovirus (RSIV) (GenBank accession BAK14289) and rock bream731 iridovirus (RBIV) (GenBank accession AFR68193) were used for a multiple sequence732 alignment analysis with default setting (http://www.ebi.ac.uk/Tools/msa/clustalw2/). (B-I)733 Immunofluorescent microscopy for co-transfection of MYC-ILK + FLAG-PINCH (B-E),734 and MYC-ORF119L + FLAG-PINCH (F-I) plasmids in FHM fish cells for735 immunofluorescence analysis. Alexa fluor 555- (ILK and ORF119L in red colour) or 488-736 (PINCH in green colour) conjugated secondary antibodies were applied for the detection.737 Abbreviation: ANKP, predicted three ankyrin-repeats domain-containing protein.738 739 Figure 3. ORF119 interacts with PINCH to affect the PINCH-ILK interaction. (A) In740 GST pull-down assay, the expression of FLAG-PINCH fusion proteins from transfected741 HEK293T cells were detected by anti-FLAG antibody Western blotting. After incubating742 with the GST, GST-ILK, and GST-ORF119L bound beads, the associated FLAG-PINCH743 fusion proteins were detected by anti-FLAG antibody Western blotting. The purity of GST,744 GST-ILK, and GST-ORF119L was examined by Coomassie blue staining of SDS-PAGE.745 (B-C) In co-immunoprecipitation assay, plasmids [B: (pFLAG-PINCH + pc-Myc-CMV-2;746 pFLAG-CMV-2 + pMYC-ORF119L; and pFLAG-PINCH + pMYC-ORF119L,747 respectively); C: (pFLAG-PINCH + pc-Myc-CMV-2; pFLAG-CMV-2 +748 pMYC-119LΔ3ANK; pFLAG-PINCH + pMYC-119LΔ3ANK; and pFLAG-PINCH +749
  • 36. 36 pMYC-ILK, respectively)] were co-transfected into HEK293T cells. The expression of750 MYC-ORF119L, MYC-ILK and FLAG-PINCH fusion proteins was examined by751 anti-MYC and anti-FLAG antibodies Western blotting respectively. After incubating with752 the anti-MYC antibody bound protein G beads, the associated FLAG-PINCH fusion753 proteins were examined by anti-FLAG antibody Western blotting. GAPDH was used as the754 loading control. (D-E) In the co-immunoprecipitation assay, plasmids (pFLAG-PINCH +755 pc-Myc-CMV-2; pFLAG-CMV-2 + pMYC-ILK; and pFLAG-PINCH + pMYC-ILK) was756 co-transfected with pORF119L-EGFP (D, right panel 4-6) or p119LΔ3ANK-EGFP (E,757 panel 1-3), respectively. The expression of ORF119L-GFP, 119LΔ3ANK-GFP,758 FLAG-PINCH, and MYC-ILK were detected by anti-GFP, anti-PINCH, and anti-MYC759 antibodies respectively. After incubating with the ANTI-FLAG M2 affinity gel (D) or760 anti-MYC antibody bound protein G beads (E), the associated MYC-ILK (D) or761 FLAG-PINCH (E) fusion proteins were examined by anti-MYC (D) or anti-FLAG (E)762 antibody Western blotting, respectively. β-actin (D) and GAPDH (E) was used as the763 loading control, respectively.764 765 Figure 4. ORF119L overexpression perturbs zebrafish embryogenesis. Morphology of766 mock vector-injected (A-F), ORF119L-overexpressing (G-L) and767 119LΔ3ANK-overexpressing (M-R) embryos from 4 hpf (hours post fertilization) to 4 dpf768 (days post fertilization). Abnormal phenotypes were found in ISKNV769 ORF119L-overexpressing embryos (G-L). A black arrow indicates pericardial edema and a770 white asterisk is for opaque yolk sac abnormality. (S-U) GFP expression in mock vector-,771 pORF119L-EGFP-, or p119LΔ3ANK-EGFP-injected embryos at 12 hpf. (V-X).772
  • 37. 37 Percentage of embryos showing cardiac edema (V), opaque yolk sas (W), and slow blood773 circulation (X) phenotype at 3 dpf. Scale bars=500 μm.774 775 Figure 5. ORF119L overexpression affects angiogenesis in zebrafish embryos. (A-B)776 The ISV structure was examined in the Tg(flk1:GFP) transgenic embryos. The ISV777 development was normal in mock vector-injected embryos (A), whereas disorganized ISV778 was found after ORF119L over-expression (B) at 3 dpf. (C-J) Whole mount AP staining779 showing the vessels development in mock control (C, D, G and H) and780 ORF119L-overexpressing (E, F, I and J) embryos at 3 dpf. SIV was impaired after781 ORF119L over-expression. (K-L) ISV structure was normal in 119LΔ3ANK-expressing782 embryos at 3 dpf. Abbreviation: ISV, intersegmental vessel; PCV, posterior cardinal vein;783 DA, dorsal aorta; PD, pronephric duct; SIV, subintestinal vessel. Scale bars=500 μm in784 A-F. Scale bars=200 μm in c-f.785 786 Figure 6. ORF119L overexpression results in cardiac defects in zebrafish. (A-D)787 Paraffin section and H&E staining in mock control (A and C) and788 ORF119L-overexpressing (B and D) embryos at 3 dpf. The arrowheads indicate the789 ventricular wall. (E-H) TEM assay detecting the ultra-cellular structure of ventricle muscle790 in mock control (E and G) and ORF119L-overexpressing embryos (F and H) at 3 dpf.791 Images in C, D, G and H showed higher magnifications of the boxed areas in A, B, E and F,792 respectively. Abbreviation: PC, pericardial cavity; v, ventricle; a, atrium; S*, sarcomeric793 structure. Bars=500 μm in A-B, 100 μm in C-D, 2 μm in E-F, and 500 nm in G-H.794 795
  • 38. 38 Figure 7. ISKNV infection disrupted the sarcomeric Z-disk of cardiomyocyte in796 mandarin fish. The structure of sarcomere and Z-disk of cardiac muscle in PBS-injected797 control (A-B), and ISKNV-infected mandarin fish at 3 (C-D), 5 (E-F), and 7 (G-H) days798 post infection. Images of B, D, F, and H are higher magnifications of the boxed areas in A,799 C, E, and G. Abbreviation: S*, sarcomeric structure.800 801 Figure 8. ORF119L overexpression resembles the effect of ILK inhibition. (A-L)802 Developmental morphology and whole mount in situ hybridization of anf in Ctrl-MO803 control embryos (A-C), ORF119L-overexpressing embryos (D-F), ILK-DN-expressing804 embryos (G-I), and ILK-MO-injected embryos (J-L). Arrowheads indicate the pericardial805 edema. (M) Percentage of embryos showing pericardial edema in806 ORF119L-overexpressing, ILK-DN-overexpressing, and ILK-MO-injected embryos at 3807 dpf. (N) Fifty old embryos were collected and lysed by using RIPA lysis buffer containing808 the phosphatase/protease inhibitor cocktail (Merck). Western blotting was performed to809 examine the phosphorylation of AKT (Ser473) and total AKT in mock control and810 ORF119L-overexpressing embryos at 3dpf. The relative level of p-AKT and total AKT811 were calculated by normalizing to their corresponding GAPDH (Quantity One 4.6.2812 software program). (O-Q) Quantitative RT-PCR showing the fold change of anf (O),813 nkx2.5 (P), and cmlc2 (Q) transcription in Ctrl-MO-injected, ORF119L-overexpressing,814 ILK-DN-overexpressing, and ILK-MO-injected embryos at 3 dpf. Abbreviation: v,815 ventricle; a, atrium. Scale bars=500 μm for A, D, G, and J, and 100 μm for B, C, E, F, H, I,816 K, and L.817 818