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UMBC Research Day Presentation
- 7. Unique Conformer Angles δ-1 ε ζ α β γ δ 84 -165 -140 -110 -175 -65 84 147 -150 -100 -85 -170 -60 147 -140 -75 -65 -160 55 -125 -70 65 -135 170 -120 45 70 80 175 -115 60 155 110 180 -100 85 165 135 175 170 150 180 165 170 175 180 145,152 Conformer Possibilities
- 9. Program Results… DEGREE RANGE TABLE BASE No. PASS CONFORMER RANGE FAILED δ -1 ε ζ α β γ δ 3 x 17 9 2 6 -5 3 9 -1 4 4 x 17 17 4 6 -8 17 14 3 4 5 x 17 9 4 -9 1 -1 2 7 3 6 x 1 9 3 -9 -7 2 1 3 2 7 x 1 21 2 -21 -4 -14 14 1 4 8 x 17 8 4 1 1 5 5 6 8 9 x 1 8 8 -3 -6 -2 5 -4 6 10 x 17 8 6 3 5 8 2 -4 -4 11 x 39 32 -4 18 -15 32 -4 -6 29 12 x 5 30 29 -9 4 30 27 12 -12 13 x 1 12 -12 -1 -9 10 9 2 0 14 x 1 16 0 16 7 -1 1 6 4 15 x 1 9 2 -5 -8 -9 2 -2 2 16 x 17 12 2 7 -1 4 12 -1 3 17 x 1 7 3 -5 -2 -2 7 -4 -2 18 35 x 86 -151 -89 -151 129 60 113 19 35 x 113 -113 -44 -110 -137 67 93 20 35 x 93 62 -80 139 177 161 88 21 x 13 28 -4 -12 14 28 12 -1 -2 22 x 17 5 -2 -1 5 -1 -2 2 1 23 x 1 6 1 -5 -3 -6 1 0 4 24 x 1 10 4 -5 -5 2 10 -6 2 25 x 1 25 2 17 -20 22 18 2 -25 26 x 15 34 -25 -26 27 -34 28 12 2 27 x 17 7 2 -4 7 -3 -4 5 2 28 x 17 6 2 4 4 -4 -2 6 4 29 x 1 8 4 2 -7 8 8 7 4 30 x 17 7 4 -2 7 1 -2 7 3 31 x 17 10 3 -1 2 2 1 10 2 32 x 1 12 2 -2 -8 7 2 12 6 33 x 14 20 6 -20 8 1 3 3 0 34 x 1 16 0 16 -16 10 11 7 5 35 x 17 8 5 7 7 6 6 -1 8 36 x 1 26 8 -26 -11 -3 6 1 0
- 10. General Results Several Angles Outside of Published Range Novel Conformations 1 or 2 Angles Outside of Range Range Around 10 Degrees Most common conformers 1, 17 for α - helices
- 12. Target Motifs Unpaired Base Bulges Stem Loop Turn S-Turn
Editor's Notes
- - suite going from base to base
- - Add what xc, yc, and zc are from FcBc vector - Rezeroed at Bc
- - common conformers are 1 and 17 - the range of the highest degree usually falls between plus or minus 15 degrees - those that are higher may have one angle out of range - some have several causing us to question validity - those that failed commonly appear near complex sites