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NEUROIMAGING
DATA VIZ
CASE STUDY
B I O D A T A C L U B , 4 / 6 / 2 0 1 8
B Y E R I C E A R L
O H S U B E H A V I O R A L N E U R O S C I E N C E D C A N L A B S
TELLING STORIES
“There are many true statements about complex
topics that are too long to fit on a PowerPoint slide.”
~ Edward Tufte
“An American statistician and professor
emeritus of political science, statistics, and computer
science at Yale University. He is noted for his writings
on information design and as a pioneer in the field
of data visualization.”
~ Wikipedia, 4/3/18
TODAY’S STORIES
The Reproducible Figure
Dosenbach, et al, 2017, Real-time motion analytics during brain MRI improve data quality
quality and reduce costs, NeuroImage.
http://www.sciencedirect.com/science/article/pii/S1053811917306729
The Franken-Figure
Urbanski, et al, 2012, Changes in spontaneous activity assessed by accelerometry correlate
correlate with extent of cerebral ischemia-reperfusion injury in the nonhuman primate,
Translational Stroke Research.
https://link.springer.com/article/10.1007/s12975-012-0191-8
THE REPRODUCIBLE FIGURE
THE REPRODUCIBLE FIGURE
THE REPRODUCIBLE FIGURE
THE REPRODUCIBLE FIGURE
THE FRANKEN-FIGURE
THE FRANKEN-FIGURE

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Neuroimaging Data Viz Case Study

  • 1. NEUROIMAGING DATA VIZ CASE STUDY B I O D A T A C L U B , 4 / 6 / 2 0 1 8 B Y E R I C E A R L O H S U B E H A V I O R A L N E U R O S C I E N C E D C A N L A B S
  • 2. TELLING STORIES “There are many true statements about complex topics that are too long to fit on a PowerPoint slide.” ~ Edward Tufte “An American statistician and professor emeritus of political science, statistics, and computer science at Yale University. He is noted for his writings on information design and as a pioneer in the field of data visualization.” ~ Wikipedia, 4/3/18
  • 3. TODAY’S STORIES The Reproducible Figure Dosenbach, et al, 2017, Real-time motion analytics during brain MRI improve data quality quality and reduce costs, NeuroImage. http://www.sciencedirect.com/science/article/pii/S1053811917306729 The Franken-Figure Urbanski, et al, 2012, Changes in spontaneous activity assessed by accelerometry correlate correlate with extent of cerebral ischemia-reperfusion injury in the nonhuman primate, Translational Stroke Research. https://link.springer.com/article/10.1007/s12975-012-0191-8

Editor's Notes

  1. The reproducible figure is from a paper on giving the MRI operator feedback on patient motion between WUSTL and OHSU The franken-figure is from a paper on a non-human primate stroke model from the ONPRC
  2. What story is this trying to tell? (A trend in 4 scatter plots and 2 scatter plots) [advance] How about now? (The colors represent groups) [advance] How about now? (“Mean FD vs Age” in the same cohort split differently) What do you notice about the points on the a and b plots? (The same points, but different colors) [advance] And here’s the whole story. A reproducible figure is good when you may have to refine the figure many times.
  3. What story is this trying to tell? (A trend in 4 scatter plots and 2 scatter plots) [advance] How about now? (The colors represent groups) [advance] How about now? (“Mean FD vs Age” in the same cohort split differently) What do you notice about the points on the a and b plots? (The same points, but different colors) [advance] And here’s the whole story. A reproducible figure is good when you may have to refine the figure many times.
  4. What story is this trying to tell? (A trend in 4 scatter plots and 2 scatter plots) [advance] How about now? (The colors represent groups) [advance] How about now? (“Mean FD vs Age” in the same cohort split differently) What do you notice about the points on the a and b plots? (The same points, but different colors) [advance] And here’s the whole story. A reproducible figure is good when you may have to refine the figure many times.
  5. What story is this trying to tell? (A trend in 4 scatter plots and 2 scatter plots) [advance] How about now? (The colors represent groups) [advance] How about now? (“Mean FD vs Age” in the same cohort split differently) What do you notice about the points on the a and b plots? (The same points, but different colors) [advance] And here’s the whole story. A reproducible figure is good when you may have to refine the figure many times.
  6. “The Franken-figure: A Frankenstein’s Monster of different plots or images used to tell a more cohesive story.” Any guesses as to the story here? On the left are axial slices of a rhesus macaque’s brain On the right are 3D models of those same brains The top and bottom are 2 days after stroke and 7 days after stroke for that same macaque, respectively How many pieces of software do you think I used to make this figure? [advance] And here’s the whole story. A franken-figure is good to tell a story outside the bounds of one piece of software.
  7. “The Franken-figure: A Frankenstein’s Monster of different plots or images used to tell a more cohesive story.” Any guesses as to the story here? On the left are axial slices of a rhesus macaque’s brain On the right are 3D models of those same brains The top and bottom are 2 days after stroke and 7 days after stroke for that same macaque, respectively How many pieces of software do you think I used to make this figure? [advance] And here’s the whole story. A franken-figure is good to tell a story outside the bounds of one piece of software.