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Deep Neural Networks for
Irregular Noisy Time Series
With applications to Astronomical
Time Series Prediction
Abhishek Malali, Pavlos Protopapas
Silicon Valley Big Data Science
Motivation
● Irregular time series can be found
in transactional data, event logs
and astronomy.
● Currently the series are converted
into regular time series.
● Standard methods like ARIMA,
Kalman filters and Markov models
are used to predict.
Example of an Irregular and noisy time series.
Silicon Valley Big Data Science
Recurrent Neural Networks (RNN)
● RNNs have been previously used in text and speech recognition.
● Suffer from vanishing gradient problem.
● Does not allow RNN units to remember long term dependencies.
Silicon Valley Big Data Science
Long Short Term Memory(LSTM) Models
● LSTM models are capable of remembering long term tendencies in
sequences and suitably adjust to the short term signal behaviour.
● Do not suffer from vanishing gradient problem due to addition of the cell
memory state.
● The memory updates over time depending on the input.
● Powerful recurrent neural network architecture and adaptability to
variable length sequences.
Silicon Valley Big Data Science
Network Architecture
Silicon Valley Big Data Science
Multiple Error Realizations
● With error budget for
astronomical light curves, new
realization of time series are
generated.
● Results indicate that using
multiple realizations of the
model, helps the model become
noise invariant and hence, predict
better.
Silicon Valley Big Data Science
Results
1. Irregular Sinusoids 2. Irregular Gaussian Processes
Silicon Valley Big Data Science
Results
3. Transient Signals 4. Long Period Variable stars
Silicon Valley Big Data Science
Correlations in Residuals
We find correlations in the residuals, which means improvement in the
prediction can be made.
Silicon Valley Big Data Science
Correlations in Residuals
● For regular time series, the autocorrelation at lag k is defined as
where R represents the residuals.
Silicon Valley Big Data Science
Correlation in Residuals
● The aim is to modify the Loss function in order to make the network learn
not only to optimize on the RMSE but on the autocorrelation of the
residuals as well.
● Φ here is the normalized autocorrelation of the previous n lags. [For our
experiments, we chose this n to be 5]
Silicon Valley Big Data Science
Results
λ = 0 λ = 100
Silicon Valley Big Data Science
Correlation in Residuals
● Equation to define the correlated residual behaviour in irregular series
● Log Likelihood
Silicon Valley Big Data Science
Correlation in Residuals
Silicon Valley Big Data Science
Correlation in Residuals
● The autocorrelation Φ is estimated by minimizing the log-likelihood using
stochastic gradient descent.
● Once Φ is determined, gradients are propagated during training to modify
the LSTM weights. During this process, the network used to estimate Φ is
static.
Silicon Valley Big Data Science
Network Architecture in TensorFlow
Autocorrelation Estimation
Network
Prediction Network
Silicon Valley Big Data Science
Network Architecture in TensorFlow
Autocorrelation Estimation NetworkPrediction Network
Silicon Valley Big Data Science
Additional work
● Focusing on LSTM based time series classifiers for variable
length sequences.
● Building a Tensorflow based time series machine learning
library. Can be found at
https://github.com/abhishekmalali/TimeFlow
● Time series generation library(TimeSynth). The repo can be
found at https://github.com/TimeSynth/TimeSynth

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Deep Neural Networks for Irregular Noisy Time Series

  • 1. Deep Neural Networks for Irregular Noisy Time Series With applications to Astronomical Time Series Prediction Abhishek Malali, Pavlos Protopapas
  • 2. Silicon Valley Big Data Science Motivation ● Irregular time series can be found in transactional data, event logs and astronomy. ● Currently the series are converted into regular time series. ● Standard methods like ARIMA, Kalman filters and Markov models are used to predict. Example of an Irregular and noisy time series.
  • 3. Silicon Valley Big Data Science Recurrent Neural Networks (RNN) ● RNNs have been previously used in text and speech recognition. ● Suffer from vanishing gradient problem. ● Does not allow RNN units to remember long term dependencies.
  • 4. Silicon Valley Big Data Science Long Short Term Memory(LSTM) Models ● LSTM models are capable of remembering long term tendencies in sequences and suitably adjust to the short term signal behaviour. ● Do not suffer from vanishing gradient problem due to addition of the cell memory state. ● The memory updates over time depending on the input. ● Powerful recurrent neural network architecture and adaptability to variable length sequences.
  • 5. Silicon Valley Big Data Science Network Architecture
  • 6. Silicon Valley Big Data Science Multiple Error Realizations ● With error budget for astronomical light curves, new realization of time series are generated. ● Results indicate that using multiple realizations of the model, helps the model become noise invariant and hence, predict better.
  • 7. Silicon Valley Big Data Science Results 1. Irregular Sinusoids 2. Irregular Gaussian Processes
  • 8. Silicon Valley Big Data Science Results 3. Transient Signals 4. Long Period Variable stars
  • 9. Silicon Valley Big Data Science Correlations in Residuals We find correlations in the residuals, which means improvement in the prediction can be made.
  • 10. Silicon Valley Big Data Science Correlations in Residuals ● For regular time series, the autocorrelation at lag k is defined as where R represents the residuals.
  • 11. Silicon Valley Big Data Science Correlation in Residuals ● The aim is to modify the Loss function in order to make the network learn not only to optimize on the RMSE but on the autocorrelation of the residuals as well. ● Φ here is the normalized autocorrelation of the previous n lags. [For our experiments, we chose this n to be 5]
  • 12. Silicon Valley Big Data Science Results λ = 0 λ = 100
  • 13. Silicon Valley Big Data Science Correlation in Residuals ● Equation to define the correlated residual behaviour in irregular series ● Log Likelihood
  • 14. Silicon Valley Big Data Science Correlation in Residuals
  • 15. Silicon Valley Big Data Science Correlation in Residuals ● The autocorrelation Φ is estimated by minimizing the log-likelihood using stochastic gradient descent. ● Once Φ is determined, gradients are propagated during training to modify the LSTM weights. During this process, the network used to estimate Φ is static.
  • 16. Silicon Valley Big Data Science Network Architecture in TensorFlow Autocorrelation Estimation Network Prediction Network
  • 17. Silicon Valley Big Data Science Network Architecture in TensorFlow Autocorrelation Estimation NetworkPrediction Network
  • 18. Silicon Valley Big Data Science Additional work ● Focusing on LSTM based time series classifiers for variable length sequences. ● Building a Tensorflow based time series machine learning library. Can be found at https://github.com/abhishekmalali/TimeFlow ● Time series generation library(TimeSynth). The repo can be found at https://github.com/TimeSynth/TimeSynth