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GenomeBrowser
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GenomeBrowser
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, Genome Browser 4
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An Interview with
Ewan Birney: Keynote Speaker at O’Relly’s Bioinformatics Technology Conference 2001/10
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•UCSC Human Genome
Browser •50,000 Hit/Day •3,000 users/Day • •1,257 Hit/Day •10 users/Day
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Code Name :
Acuvue Objective: !
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1
3 2
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Google Maps API
Presentation SNP Population Reference Link
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•Part of Generic
Model Organism Database Project •Lightweight & portable •Highly configurable •Clean user interface •Promotes data sharing
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Glyphs DAS Adaptor Remote Source
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Glyphs DAS Adaptor UCSC Genome Browser
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•Gbrowse on UCSC •Gbrowse
on EnsEMBL •Gbrowse on both
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Gbrowse 2 Gbrowse 1 Gbrowse 3 My Gbrowse
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•BioPerl and Bio::Graphics
Software Libraries •Bio::DB::GFF Database •GadFly Database •Plug-ins
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seqid source type start end score strand phase attribute Chr1 dbsnp snp 200 300 . + . ID=SNP:rs1234;alleles:G/T Chr1 dbsnp snp 400 700 . + . ID=SNP:rs4321;alleles:G/T
39.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 A B C (1,2,3,7,8,9,10,11) (1,4,14,15,16,17) (1,5,20)
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