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Chemical named entity recognition and literature mark-up

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Duncan Hull
Duncan Hull

Presentation by Colin Batchelor, Royal Society of Chemistry publishing, in Manchester, March 2008

TechnologyEducation
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Chemical named entity recognition and literature mark-up Colin Batchelor Informatics Department Royal Society of Chemistry [email_address]
Overview ,[object Object],[object Object],[object Object]
 
 
 
 
 
 
Project Prospect: What do we find? ,[object Object],[object Object],[object Object],[object Object],[object Object]
Project Prospect: How do we find it? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
 
RDF in an RSS reader
RDF: how we do it now ,[object Object],[object Object],[object Object],[object Object]
RDF: what it looks like now ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Basics for a chemical ontology ,[object Object],[object Object]
Basics for a chemical ontology: 1. Objects of chemical discourse ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Imidazole
An imidazole
The imidazole side-chain/group/ring
Can ChEBI handle this? ,[object Object],[object Object],[object Object],[object Object],[object Object]
Disambiguation ,[object Object],[object Object],[object Object],[object Object]
Disambiguation: What a one sense per collocation feature set might look like ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Basics for a chemical ontology: 2. Parthood relations ,[object Object],[object Object],[object Object]
Basics for a chemical ontology: 2. Parthood relations ,[object Object],[object Object],[object Object],[object Object]
Basics for a chemical ontology: 2. Parthood relations ,[object Object],[object Object]
Basics for a chemical ontology: 2. Parthood relations ,[object Object],[object Object],[object Object],[object Object],[object Object]
Basics for a chemical ontology: 2. Parthood relations ,[object Object],[object Object],[object Object],[object Object],[object Object]
Open questions ,[object Object],[object Object],[object Object]
Acknowledgements ,[object Object],[object Object],[object Object]
Open questions ,[object Object],[object Object],[object Object]

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Chemical named entity recognition and literature mark-up