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DETECTING
ALTERNARIA
SOLANI USING
POLYMRASE CHAIN REACTION
ALTERNARIA SOLANI
Alternaria solani is a pathogenic fungus that attack and cuase diseases in green
plants especially Potato, Tomato, Peppers. Early blight is one of the diseases
caused by A.solani.
2
INTRODUCTION
 Early blight is a common threat to many
economically important crops
 including potatoes
 As this disease cause serious loss in
yield and quality
 Thus, it is important to detect this
pathogen at early stage.
3
DETECTION METHOD
 There are many other molecular
techniques for the detection
 Using RT-PCR is one of the best technique
in detection
 PCR enables highly sensitive and accurate
detection of fungal pathogens
 It is primer and temperature based
technique, amplify the targeted nucleic
acid strand
4
DETECTION PROCESS
MATERIAL
 Infected plant samples
 DNA extraction
 Alternaria solani primer
 PCR mixture
 Gel electropherasis
 UV light
METHOD
 Taking infected and fresh potato leaves as a
sample
 Extraction of DNA
 Amplification using PCR
 Results detection using ultraviolet light
5
CONCLUSIONS
RESULTS
 A.Solani must be identified using RT-PCR
 DNA strands will be separated based upon
there amplification
 Amplified strands appeared as bright bands
under UV. light
 Hence using PCR technique has great
importance
 It could be the revolutionary method , to save
the fields
 Earlier detection helps to decrease the loss
IMPORTANCE
6
EFFECTIVENESS
PCR and other techniques
1st Qtr 2nd Qtr 3rd Qtr 4th Qtr
7
 The graph is showing the effectiveness of PCR detection as
compared with other molecular techniques
 The 1st Qtr representing the pcr
 Other three Qtrs (2,3,4) are representing other molecular
technques
DISCUSSIONS
8
 The study introduces an RNA-based method for detecting Alternaria solani overcoming limitations of conventional PCR, morphological
identification
 identification of a specific and stably expressed gene, jg1677, in A. solani, providing a basis for RNA-based detection. The gene's specificity
was confirmed among 22 potato pathogens, making it a reliable marker for A. solani.
 The study addressed the issue of sample transport in plastic bags, confirming that storing samples for up to 24 hours did not significantly
affect the stability of jg1677 expression.
 The RNA-based qPCR method is highlighted as more effective for early detection compared to morphological examination and DNA-based
methods. Early detection facilitates timely control and prevention of disease spread in agricultural production.
 The study represents a significant advancement in the field of pathogen detectionoffering a sensitive, specific, and efficient RNA-based
method
REFFERENCES
9
https://apsjournals.apsnet.org/doi/abs/10.1094/PDIS-04-19-0765-RE
https://www.frontiersin.org/articles/10.3389/fmicb.2022.1016996/full
https://www.tandfonline.com/doi/abs/10.1080/00275514.1998.12026975
THANKYOU!
MOEENUDEEN1321@GMAIL.COM
HTTPS://CHAT.WHATSAPP.COM/GEVLJLKERKMK6EW
FZISDHE

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A.solani detection using pcr by md .pptx

  • 2. ALTERNARIA SOLANI Alternaria solani is a pathogenic fungus that attack and cuase diseases in green plants especially Potato, Tomato, Peppers. Early blight is one of the diseases caused by A.solani. 2
  • 3. INTRODUCTION  Early blight is a common threat to many economically important crops  including potatoes  As this disease cause serious loss in yield and quality  Thus, it is important to detect this pathogen at early stage. 3
  • 4. DETECTION METHOD  There are many other molecular techniques for the detection  Using RT-PCR is one of the best technique in detection  PCR enables highly sensitive and accurate detection of fungal pathogens  It is primer and temperature based technique, amplify the targeted nucleic acid strand 4
  • 5. DETECTION PROCESS MATERIAL  Infected plant samples  DNA extraction  Alternaria solani primer  PCR mixture  Gel electropherasis  UV light METHOD  Taking infected and fresh potato leaves as a sample  Extraction of DNA  Amplification using PCR  Results detection using ultraviolet light 5
  • 6. CONCLUSIONS RESULTS  A.Solani must be identified using RT-PCR  DNA strands will be separated based upon there amplification  Amplified strands appeared as bright bands under UV. light  Hence using PCR technique has great importance  It could be the revolutionary method , to save the fields  Earlier detection helps to decrease the loss IMPORTANCE 6
  • 7. EFFECTIVENESS PCR and other techniques 1st Qtr 2nd Qtr 3rd Qtr 4th Qtr 7  The graph is showing the effectiveness of PCR detection as compared with other molecular techniques  The 1st Qtr representing the pcr  Other three Qtrs (2,3,4) are representing other molecular technques
  • 8. DISCUSSIONS 8  The study introduces an RNA-based method for detecting Alternaria solani overcoming limitations of conventional PCR, morphological identification  identification of a specific and stably expressed gene, jg1677, in A. solani, providing a basis for RNA-based detection. The gene's specificity was confirmed among 22 potato pathogens, making it a reliable marker for A. solani.  The study addressed the issue of sample transport in plastic bags, confirming that storing samples for up to 24 hours did not significantly affect the stability of jg1677 expression.  The RNA-based qPCR method is highlighted as more effective for early detection compared to morphological examination and DNA-based methods. Early detection facilitates timely control and prevention of disease spread in agricultural production.  The study represents a significant advancement in the field of pathogen detectionoffering a sensitive, specific, and efficient RNA-based method