SlideShare a Scribd company logo
1 of 49
Download to read offline
AN ABSTRACT OF THE THESIS OF
Megan E. Guerre for the degree of Honors Baccalaureate of Science in Biology presented on May
22, 2014. Title: Isotopic Analysis of Diet Specificity in the Chisel-toothed Kangaroo Rat,
Dipodomys microps
Abstract approved: _________________________________________________
Rebecca C. Terry
Rapid changes in global climate have put many species at risk, particularly niche
specialists. The Chisel-toothed kangaroo rat, Dipodomys microps, is thought to specialize on the
desert shrub Atriplex confertifolia. Because of this close relationship, D. microps was presumed
to have tracked the shrub as its distribution shifted south during the last glacial maximum.
However, recent phylogeographic evidence shows that D. microps’ distribution did not shift,
despite the environmental changes during the last glacial maximum, posing an interesting
question: How did D. microps persist in place when the plant on which it specializes did not
inhabit the area?
Concentrations of stable isotopes found within D. microps bone collagen were used to
explore diet variability in the species over the past 8,000 years. Average δ13
C values through time
indicated that D. microps is capable of consuming plants other than A. confertifolia and a
comparison of δ15
N values to sympatric species showed that D. microps could also be consuming
animal protein. Analysis of body size indicated that populations of D. microps did not experience
a shift in average body size through time, but instead responded to changing abiotic conditions by
shifting its dietary niche, as indicated by fluctuating values of δ13
C and δ15
N through time.
Understanding which species are capable of behavioral and/or physiological responses to
changing climate will allow us to better predict the impacts of ongoing and future climate change.
Key words: Stable Isotopes, Dipodomys microps, Atriplex confertifolia, Climate Change, Niche
(Ecology)
Corresponding email address: mgnguerre@gmail.com
Isotopic Analysis of Diet Specificity in the Chisel-toothed Kangaroo Rat, Dipodomys microps
By
Megan E. Guerre
A PROJECT
submitted to
Oregon State University
University Honors College
in partial fulfillment of
the requirements for the
degree of
Honors Baccalaureate of Science in Biology (Honors Associate)
Presented May 22, 2014
Commencement June 2014
©Copyright by Megan Guerre
May 22, 2014
All Rights Reserved
Honors Baccalaureate of Science in Biology project by Megan E. Guerre presented on May 22,
2014.
APPROVED:
Mentor, representing Integrative Biology, Oregon State University
Committee member, representing Fisheries and Wildlife, Oregon State University
Committee member, representing Life Sciences, University of Nevada, Las Vegas
Dean, University Honors College
I understand that my project will become part of the permanent collection of Oregon State
University, University Honors College. My signature below authorizes release of my project to
any reader upon request.
Megan E. Guerre, Author
ACKNOWLEDGMENTS
I would first like to thank my mentor, Rebecca Terry for all of her help during this
process. She has patiently explained so many things and provided incredible feedback at every
stage. I’ve learned so much from her and am so grateful to her for sharing her knowledge with
me. Thank you for everything, Becca!
I would also like to thank the University Honors College for providing funding for my
research as well as guiding me through the process of completing my thesis.
Finally, I would like to thank my friends and family for all of the encouragement, help,
and support they’ve given me throughout my life and during the duration of this project. I
couldn’t have accomplished any of this without them.
TABLE OF CONTENTS
INTRODUCTION………………………………………………………………………..... 1
1.1 Species Response to Climate Change………………………………………….1
1.2 Dipodomys microps………………………………………………………….... 1
1.3 Atriplex confertifolia…………………………………………………………...3
1.4 Dipodomys microps Feeding Behaviors………………………………………. 4
1.5 Dipodomys microps at the Last Glacial Maximum (LGM)……………………5
1.6 Isotopic Analyses of δ13
C and δ15
N…………………………………………… 6
1.7 Physiological Responses……………………………………………………….9
1.8 Predictions…………………………………………………………………….. 9
METHODS………………………………………………………………………………… 11
2.1 Sample Collection and Preparation…………………………………………….11
2.2 Collagen Extraction…………………………………………………………….12
2.3 Analysis of Stable Isotopes and Body Size…………………………………….13
RESULTS………………………………………………………………………………….. 15
3.1 δ13
C Analysis………………………………………………………………….. 15
3.2 Cross-correlation Analysis of δ13
C and δ18
O………………………………….. 19
3.3 δ15
N Analysis………………………………………………………………….. 20
3.4 Comparisons Among Sympatric Species………………………………………22
3.5 Cross-correlation Analysis of δ15
N and δ18
O…………………………………..24
3.6 Variance in δ13
C and δ15
N values……………………………………………... 25
3.7 Diastema Length Analysis……………………………………………………..26
3.8 Cross-correlation Analysis of Diastema Length and δ18
O……………………..31
DISCUSSION………………………………………………………………………………32
4.1 Introduction…………………………………………………………………….32
4.2 δ13
C……………………………………………………………………………. 32
4.3 δ15
N……………………………………………………………………………. 34
4.4 Variance in δ13
C and δ15
N……………………………………………………...36
4.5 Diastema Length……………………………………………………………….36
4.6 Conclusions…………………………………………………………………….37
LITERATURE CITED……………………………………………………………………..39
LIST OF FIGURES AND TABLES
Figures
1. Chisel-toothed kangaroo rat, Dipodomys microps….…………………………………... 2
2. Great Basin Map…..…………………………………………………………………….. 3
3. Dipodomys microps feeding on A. confertifolia………………………………………… 4
4. Comparison of D. microps’ and D. merriami’s incisors……………………..…………..5
5. CO2 fixation in the C3 photosynthetic pathway…………………………………………. 8
6. CO2 fixation in the C4 photosynthetic pathway…………………………………………. 8
7. Mandible measurements………………………………………………………………… 12
8. Boxplot of binned δ13
C values….……………………………………………………….. 15
9. Times series of δ13
C values………………………………………………………………16
10. Time series of δ18
O values….………………………………………………………….. 19
11. Cross-correlation analysis of δ18
O and δ13
C time series……………………………….. 20
12. Boxplot of binned δ15
N values………………………………………………………….21
13. Time series of δ15
N values……………………………………………………………... 22
14. Average δ15
N and δ13
C values of D. microps and sympatric species………………….. 23
15. Cross-correlation analysis of δ18
O and δ15
N time series………………………………..24
16. Variance in δ13
C and δ15
N data……………………………………………………….... 25
17. Boxplot of binned diastema length values……………………………………………...26
18. Time series of diastema length values…………………………………………………. 28
19. Variance in diastema length data………………………………………………………. 28
20. Cross-correlation analysis of diastema length and δ18
O time series…………………....31
Tables
1. Average δ13
C and δ15
N values (‰) and standard deviations……………………………. 17
2. ANOVA table for δ13
C data……………………………………………………………...17
3. All δ13
C and δ15
N values (‰)…………………………………….……………………....18
4. ANOVA table for δ15
N data….…………………………………………………………. 21
5. Average δ15
N and δ13
C values and standard deviations of D. microps and
sympatric species………….…………………………………………………………......23
6. ANOVA table for diastema length data………………………………………………….27
7. Average diastema length values (mm) and standard deviations…………………………27
8. All diastema length (mm) values………………………………………………………... 29
ABBREVIATIONS
Before Present (BP)
Interquartile Range (IQR)
Last Glacial Maximum (LGM)
Isotopic Analysis of Diet Specificity in the Chisel-toothed Kangaroo Rat, Dipodomys microps
INTRODUCTION
1.1 Species Response to Climate Change
Recent, rapid shifts in global climate have caused changes in many habitats, placing
species and ecosystems at risk. Increasing temperatures have changed the distribution of plant
communities, causing some consumer species to shift their distributions in turn in order to track
the resources they need to survive (Grayson 2011). Others have developed strategies that allow
them to persist in place during times of climatic change. One of these mechanisms involves a
shift in a species’ average body size. During the cool, wet climate of the last glacial maximum,
warm-blooded mammals would have likely exhibited larger body sizes than those of their
relatives living in warmer, drier climates, according to Bergmann’s rule (Meiri and Dayan 2003).
Another strategy may involve a species shifting its fundamental or realized niche in order to take
advantage of the resources that are still available or resources that are newly available in the
original location (Jezkova, Olah-Hemmings, Riddle 2011). Here I will examine the concept of
niche shifting in a single species of small mammal, Dipodomys microps, in the Great Basin of
Western North America. Specifically, in order to evaluate its ability to adapt to a changing
environment, I use stable isotope analysis and morphological size measurements to address diet
flexibility and physiological response to climate change that has unfolded over the last 8,000
years in the Smoke Creek desert of northwestern Nevada.
1.2 Dipodomys microps
Dipodomys microps (Fig. 1) is a medium-sized, small-eared kangaroo rat with a narrow
face, prominent face-mask, dark tail stripes, and a metallic gray pelage (Hayssen 1991). Like
other kangaroo rats of its genus, D. microps possesses short front feet and legs, large rear ones,
2
and a long tail that assists with balance and leaping (Grayson 2011). Other shared characteristics
include large auditory apparatuses used to detect nearly imperceptible sounds made by desert
predators and the abilities to concentrate urine, a water conservation technique, and extract water
from their food (Grayson 2011). The aforementioned adaptations make it possible for these
rodents to inhabit the arid deserts of the Great Basin (Fig. 2), a vast region of internal drainage,
which is bordered to the west by the Sierra Nevada Mountains, to the east by the Wasatch
Mountains and to the south by the Colorado River (Hayssen 1991).
One way in which D. microps is distinguishable from other members of the Dipodomys
genus is its diet preference. While most Great Basin kangaroo rats are classified as granivorous,
or feeding primarily on seeds, D. microps is folivorous, with a diet thought to consist almost
entirely of leaves from the desert shrub Atriplex confertifolia, commonly known as shadscale or
spiny saltbush (Kenagy 1973).
Fig. 1 The Chisel-toothed kangaroo rat, Dipodomys microps. (American Society of
Mammalogists 2014).
3
Fig. 2 The deserts of the Western United States. Study site (in the Smoke Creek Desert) indicated
by the star. (Rand McNally 2010)
1.3 Atriplex confertifolia
Shadscale Saltbush (A. confertifolia) is a drought tolerant, low-growing shrub, distributed
throughout Western North America with the largest concentrations found in the Great Basin and
Colorado Plateau (USDA 2014). Characterized by spine-tipped branches and gray-green leaves,
A. confertifolia is classified as a facultative halophyte and can tolerate soils of high salinity and
low moisture (Grayson 2011, USDA 2014). Many Atriplex species possess the ability to
concentrate salt in the outermost leaf tissue layers, specifically the vesicular trichome and the
epidermis (Kenagy 1973). This adaptation contributes to leaf color which allows leaves to reflect
4
sunlight, keeps the plant cooler due to the lighter color of its leaves, and provides a defense from
herbivores, which may find the high salinity of the leaves to be unpalatable (Grayson 2011).
1.4 Dipodomys microps Feeding Behaviors
Despite the deterrent of leaves with hypersaline tissues, Kenagy reportedly observed D.
microps exhibiting selective harvesting with most individuals choosing to collect leaves from A.
confertifolia shrubs (1973, Fig. 3). Kenagy postulated that D. microps’ namesake, anteriorly
flattened chisel-shaped incisors (Fig. 4), provide it with the ability to scrape off the hypersaline
outer layer of A. confertifolia leaves in order to reach the comparably more succulent layers
beneath (1973).
Fig. 3 Dipodomys microps feeding on A. confertifolia shrub (Kenagy 1973).
392 G. J. Kenagy:
Fig. 4. Dipodomys microps in the top of a spiny saltbush shrub, Atriplex confertifolia
Although D. microps near Big Pine uses leaves of A. confertifolia
to the nearly total exclusion of other plant species (see list under "Ve-
getation at the Study Site"), the other leaves taken were all chenopods:
A. canescens, A. polycarpa, Sarcobatus, and Eurotia lanata. Of 14 records
of the food plants of D. microps in Nevada (summarized by Hall, 1946),
10 are for fresh leaves and four are for seeds. Six of the 10 records of
leaves are for chenopods, four of which are Atriplex spp. However,
D. microps is not the only species of kangaroo rat known to utilize
chenopod leaves. Tappe (1941) recorded leaves and stems of Atriplex sp.
in six of 17 excavated burrows of D. heermanni, and Culbertson (1946)
recorded "very small quantities of alkali blite" (Suaeda sp.) in burrows
of D. nitratoides. Hall (1946) reports leaves of Atriplex sp. in cheek
pouches of D. dese?i, and Bradley and Mauer (1971) recorded leaves of
A. canescens in cheek pouches of D. merriami. However, there is no
evidence that any other species of Dipodomys relies as heavily as D.
microps on these leaves.
5
Fig. 4 Anteriorly flattened chisel-shaped incisors of D. microps (left) and the rounded, narrower
incisors of relative D. merriami (right) (Kenagy 1973).
Selective pressure likely favored the broad and flat lower incisor because through its use,
D. microps is able to consume all of the water it requires from specific tissues in these leaves
(Kenagy 1973). This unique diet provides for niche segregation between D. microps and other
species in the Dipodomys genus and makes it possible for these species to occur sympatrically,
inhabiting the same regions and even the same microhabitats on a local scale (Baumgardener and
Kennedy 1994). In times of climatic change, habitats with climate conditions suitable for D.
microps shift in latitude. The commonly held assumption is that the fauna of a given habitat are
likely to track that habitat as the climate changes in order to continue to live within areas
exhibiting the climate conditions they require, (otherwise known as a species’ “climate
envelope.”)
1.5 Dipodomys microps at the Last Glacial Maximum (LGM)
During the last glacial maximum (LGM), approximately 21,000 years before present, the
Great Basin was characterized by increased precipitation and cooler temperatures (Grayson
2011), resulting in elevational and latitudinal shifts, as well as compositional turn-over in Great
Basin plant assemblages (Jezkova, Olah-Hemmings, Riddle 2011). Because of its close
association with shadscale, D. microps has been classified as a diet and niche specialist and was
assumed to experience range shifts mirroring those of A. confertifolia during this period of
extensive climate change (Jezkova, Olah-Hemmings, Riddle 2011). Specifically, D. microps
394 G. J. Kenagy:
^Wk -km*-.
Fig. 5. Lower incisors of D. microps (left) and D. merriami (right). The broad,
anteriorly flattened, chisel-shaped lower incisors of D. microps are uniquely spe-
cialized for shaving off the surface tissues of leaves. The narrower, anteriorly
rounded, awl-shaped lower incisors of D. merriami are typical of the genus
stripped and the dark green tissue is exposed. The debris falls from the
lower surface of the leaf during this stripping process. Pieces of debris
were usually no greater than 2-3 mm in diamter, but one captive in-
dividual occasionally removed the surface tissue of a whole side of a leaf
in a single intact piece. The leaf is turned over and the process repeated
on the other side. After the outer tissue is shaved off the second side,
the inner part of the leaf is eaten. It takes about 15-20 sec for D. microps
to strip and eat a leaf.
The lower incisors of D. microps are uniquely adapted for shaving
off the surface tissue of leaves. They are broad and chisel-shaped, unlike
the incisors of other kangaroo rats (Fig. 5). Hall and Dale (1939) first
pointed out that D. microps can be identified by these unique incisors,
but Merriam (1904) did not even mention the lower incisors in the origi-
nal description of the species. Due to the general relationship of the
incisors, diastema, and cheek teeth in rodents, the leaf-shaving process
employed by D. microps occurs outside of the mouth. The mouth cavity
is closed off by the upper lip, which covers the diastemal palate behind
the upper incisors, as described by other investigators (for example
Quay, 1954).
of
Use of Leaves as a Water Source
D. microps kept at 26? C and provided with 100 g twigs and leaves
A. confertifolia every other day, in addition to ad lib. seeds, main-
tained or gained body weight for 20 days, until fresh leaves were no
longer provided (Fig. 3b). Under the same conditions, except without
leaves, D. microps lost weight rapidly, as mentioned already ?Fig. 3a).
By the day following the first feeding of leaves and twigs, almost all
leaves were stripped from the twigs. Leaf shavings began to accumulate,
and unchewed leaves were piled together and buried. I removed bare
This content downloaded from 128.193.164.203 on Tue, 2 Jul 2013 00:20:23 AM
All use subject to JSTOR Terms and Conditions
6
should have tracked Atriplex towards lower latitudes as the shrub tracked the warm, dry climate it
requires to grow. (Reconstructions based on packrat midden and pollen records of the
environment at the LGM indicate that low-elevation Atriplex habitat was covered in assemblages
of plants that today would be found at higher elevations, Spaulding 1990). However, recent
phylogeographic analyses show that D. microps does not exhibit a genetic signal indicative of a
species that had recently expanded its range out from a refugium, as would be the case if the
kangaroo rat had become restricted in the LGM to southern refugia in the Mojave desert and then
moved northwards with climate warming toward the end of the ice age (Jezkova, Olah-
Hemmings, Riddle 2011). In contrast, the genetic evidence supports the hypothesis that D.
microps remained in place during the last glacial maximum even though the plant on which it
specializes did not inhabit the area (Spaulding 1990), posing an interesting question regarding
diet flexibility and response to climate change.
1.6 Isotopic Analyses of δ13
C and δ15
N
Isotopic analysis of D. microps bone collagen allows for an exploration of diet variability
based on differential incorporation of certain concentrations of δ13
C and δ15
N isotopes obtained
from an animal’s food (Coltrain and Janetski 2013). δ13
C analysis provides us with information
about the types of plants that contribute to D. microps’ diet throughout its lifetime. Plants
employing the Calvin cycle photosynthetic pathway (Fig. 5), also know as C3 plants, discriminate
against CO2 molecules containing the heavier carbon isotope in a number of ways. Atmospheric
13
CO2 molecules diffuse more slowly through the air within stomatal pores, resulting in a
fractionation of approximately 4.4‰ between the air and plant tissue (Marshal, Brooks, and
Lajtha 2007). Additionally, atmospheric 13
CO2 is discriminated against by the photosynthetic
enzyme ribulose bisphosphate carboxylase, also known as rubisco, causing a further fractionation
of about 29‰ (Marshal, Brooks, and Lajtha 2007). C3 plants thus exhibit δ13
C values between
7
-12.4‰ and -37‰ with a median of -27‰ (Marshal, Brooks, and Lajtha 2007). Most plants in
Great Basin deserts follow the C3 photosynthetic pathway and possess δ13
C values within this
previously stated range. Enrichment of δ13
C values upon incorporation into bone collagen is
minor – approximately 1‰ per trophic level (0.4‰ –Post 2002, 1‰-2‰ –Sweeting et al. 2007,
and 0.8‰ –Vander Zanden and Rasmussen 2001).
The 13
C signature of A. confertifolia is distinct because it uses the C4 photosynthetic
pathway (Fig. 6), named for the four-carbon molecule to which CO2 is initially fixed. This
fixation is completed by the C4 photosynthetic enzyme phosphoenolpyruvate (PEP) carboxylase,
which has a higher affinity for atmospheric 13
CO2 than does rubisco (Marshal, Brooks, and Lajtha
2007). Sugars containing 13
CO2 diffuse from mesophyll cells (the site of initial fixation) to bundle
sheath cells where 13
CO2 is released and concentrated around rubisco, reducing discrimination
against and fractionation of atmospheric 13
CO2 (Marshal, Brooks, and Lajtha 2007). Diffusion of
some 13
CO2 out of the bundle sheath cells during this process results in more negative δ13
C values
in some C4 plants. Environmental stressors such as soil salinity and habitat elevation can affect
the permeability of bundle sheath cell membranes, influencing this process (Sandquist and
Ehleringer 1995).
C4 plants exhibit a range of δ13
C values of approximately -10‰ to -18‰, with a median
of approximately -14‰ (O’Leary 1988). The δ13
C signal recorded in the bones of D. microps
reflects the dominant plants (C3 or C4) consumed over the lifetime of the individual and a
comparison of many individuals through time can thus be used to show possible variation in diet
within a population over multiple generations. We hypothesized that in order for D. microps to
persist in place during the last glacial maximum, the species is able to exhibit diet flexibility and
consume plants other than A. confertifolia.
Analysis of δ15
N values can provide insight into climate conditions and the amount of
animal protein (e.g. insects) that might be consumed by an animal. Plant δ15
N ratios tend to
8
Fig. 5 Steps in CO2 fixation in the C3 photosynthetic pathway. Size of font represents relative
CO2 concentration at each stage (O’Leary 1988).
Fig. 6 Steps in CO2 fixation in the C4 photosynthetic pathway. Size of font represents relative CO2
concentration at each stage (O’Leary 1988).
9
increase both with decreasing precipitation and increasing temperature and aridity (Koch 2007).
The δ15
N signal recorded in the bones of D. microps might thus be expected to rise as the climate
became warmer and more arid after the last glacial maximum. An additional increase in δ15
N
values (approximately 3.4‰ per trophic level) could result from the consumption of animal
protein (Post 2002, Vander Zanden and Rasmussen 2001).
1.7 Physiological Responses
In addition to changes in diet associated with climate change, animals can also respond to
changing climates physiologically. One of these responses, described by Bergmann’s rule,
corresponds to a change in average body size of individuals within a population due to the
physics of surface area to body volume and thus the ability of an animal to dissipate heat (Meiri
and Dayan 2003). As climate warms and dries, average body size across populations tends to
decrease, thus increasing the surface area to volume ratio and increasing the efficiency of heat
loss. Conversely, cool, wet climates correspond to increases in body size across populations due
to an increase in the surface area to volume ratio and thus increase in heat retention capabilities.
1.8 Predictions
To evaluate the behavioral and physiological response of D. microps to changes in
climate, we analyzed variation in body size as well as δ13
C values and δ15
N values, within and
between separate time periods spanning the early Holocene to recent (approximately the past
9,000 years). With a local trend of warming and drying, we expect D. microps mandibles to
decrease in size (affirming Bergmann’s rule), and δ15
N values to increase, reflecting increased
aridity in the environment. Given the genetic signature of geographic stability in D. microps
through time despite the absence of the C4 shrub Atriplex confertifolia in the northern Great Basin
10
(Jezkova, Olah-Hemmings, Riddle 2011), we expect to see δ13
C values that are not exclusively in
the C4 range, indicating that D. microps is less of a dietary specialist than has previously been
considered.
11
METHODS
2.1 Sample Collection and Preparation
Fossil and modern-day samples of D. microps mandibles were collected at a long-term
owl roost located in the Smoke Creek Desert of northwestern Nevada (Fig. 2). The existence of
these samples indicates that D. microps was present for the last 8,000 years at this site. Fossil
specimens were extracted from the research site in 1993 by B. Hocket (Nevada BLM) and
identified and catalogued by R. Terry (OSU) in 2008-10. Modern samples were collected from
owl pellets gathered at the research site in the years 2007 and 2013. Data from the youngest fossil
samples (aged 25 years), which had previously been analyzed for δ13
C and δ15
N concentrations,
were included in the study and were considered additional modern samples (Terry unpublished
data).
Mandibles were sorted into groups of five or six specimens per stratum, with the
assumption that bones found in the same stratum were of similar age. Strata were combined if
they contained an insufficient number of bones to be analyzed separately and stratum age
estimates adjusted accordingly. Ages were assigned to fossil specimen groups using radiocarbon
dating and a spline-fit age model, and ages of groups containing multiple strata were calculated
by averaging ages of the separate strata (Terry et al. 2011). Samples collected in 2007 and 2013
were assigned ages of seven and one respectively. All ages are expressed as years before present
(BP), with the present defined as 2014 AD.
Prior to destructive analysis for stable isotopes, standard morphological measurements
for each mandible were recorded, including diastema, alveolar, and total length, mandibular
depth, P4 socket length and width, and premolar length and width (Fig. 7). Photographs of each
mandible were taken.
12
Fig. 7 Mandible measurements. DL: diastema length, MD: mandibular depth, AL: alveolar
length, P/MW: pre-molar width, and P/ML: pre-molar length (Terry 2008).
2.2 Collagen Extraction
Collagen was extracted from each sample in preparation for analysis of δ13
C and δ15
N
concentrations. Following tooth removal, approximately half of each mandible was separated and
then its mass was recorded. This portion of the original mandible was then placed in a
borosilicate vial with enough Milli-Q water to completely cover the bone. Samples were
sonicated to remove hair and dirt particles. After five minutes of sonication, Milli-Q water was
replaced and samples were returned to the sonicator for ten minutes. If dirt or hair remained,
Milli-Q water was again replaced and the bone returned to the sonicator for an additional ten
minutes. Three mL of 0.1 M HCl were added to each vial to decalcify the bones and the vials
placed in a refrigerator for 7.5 to 45 hours until completely decalcified. For some samples, acid
was drained and replaced one or multiple times before decalcification was complete.
Decalcification was assessed visually and manually using forceps. Collagen samples were
13
removed from the acid treatment and rinsed with Milli-Q water five times. They were next frozen
and then placed in a Labconco Bench-top 1L freeze drier for about 24 hours. Subsequently, the
collagen residue was massed and approximately 0.5-0.7 mg of material separated and placed into
tin boats. Left over collagen was retained and stored in a desiccator cabinet.
2.3 Analysis of Stable Isotopes and Body Size
Analysis of δ13
C and δ15
N isotopes took place in the Stable Isotope Laboratory at the
University of California, Santa Cruz. CO2 released upon combustion of the collagen samples was
analyzed in a mass spectrometer for δ13
C and δ15
N concentrations (‰). These values were then
weight corrected. A total of fifty-four bones were prepared and their stable isotopes analyzed.
Isotope values of two bones with abnormally high C:N ratios (one each from the 18th
and 20th
strata) were removed before analysis. This high C:N ratio, a value of approximately 3.5 or higher,
indicates the bone collagen had been diagenetically altered, either by deterioration of its original
chemical composition or through microbiological activities, and thus the isotope concentrations
were unreliable. δ13
C values for groups aged one, seven, and twenty-five years were corrected for
the Seuss effect. This concept describes the increase in fossil fuel-derived CO2 emissions since
the early 18th
century caused almost entirely by anthropogenic activities (Rubino et al. 2013).
Fossil fuel-derived CO2 is depleted in 13
C (since these fuels were formed from plants that existed
before C4 photosynthesis evolved), which has resulted in a global decrease of approximately 1‰-
2‰ in modern samples. A correction of 2‰ was added to values in the one-year age group,
1.75‰ to values in the seven-year age group, and 1.3‰ to values in the twenty-five-year age
group based on data from Rubino et al. (2013).
Mean δ13
C and δ15
N values and their standard deviations were calculated for each
stratum. Average δ13
C and δ15
N values for samples aged 25 years were compared to those of
other small mammal species living at the study site (from the same time period). Of the size data
14
collected, diastema length data were most complete (other measurements were less reliable due to
bone breakage) and mean values were used to analyze change in D. microps body size through
time. Strata were analyzed individually as a time series and also then binned into broader age
groups based on a nearby local δ18
O paleoclimate record from a lake sediment core in order to
look at overall trends among periods of similar climate conditions (δ18
O values tend to increase
with increasing temperatures and aridity in the environment, Benson et al. 2002). Bins were given
the titles Modern, Pre-modern – 3000 years ago, 3500 – 6000 years ago, and >6000 years ago. An
outlier with an abnormally high δ15
N value was removed. Binned data were analyzed using a one-
way ANOVA with Tukey’s post-hoc pairwise comparisons. Statistical analyses were conducted
in Minitab 16. Isotopic and body size time series were compared using cross-correlations to δ18
O
paleoclimate data from the literature.
15
RESULTS
3.1 δ13
C Analysis
Mean values for binned δ13
C data ranged from -18.21‰ to -16.82‰ (Table 1) with the
majority of samples falling between approximately -19‰ and -15‰ (Fig. 8). There was no
significant difference between average δ13
C values of binned age groups [F(3, 52) = 1.02, p =
0.394] (Table 2), and overlap existed between interquartile ranges (IQR) of all age bins. The
trend, moving from older to younger samples, was toward more negative δ13
C values, despite
corrections for the Seuss effect. Although the Modern bin IQR included a range of values similar
to that of other bins, the bin’s average, -18.21‰, was most different (Table 1). When the δ13
C
data of bones aged 25 years was not included, the average δ13
C value of the modern bin was
significantly more negative than those of the Holocene bins.
Fig. 8 δ13
C values binned into broad age groups based on periods of shared climate. Classifica-
tions for age bins with inclusive ages, in years, displayed in parentheses: Modern (1-30), Pre-
modern-3000 (31-3000), 3500-6000, >6000. Median values indicated by the horizontal lines
within the boxplots. Trendline shows the mean value of each age bin.
>60003500-6000Pre-modern-3000Modern
-12
-13
-14
-15
-16
-17
-18
-19
-20
-21
Age (years)
δ13CValues(‰)
16
A time series of all δ13
C values and stratum averages showed some fluctuation within and
between strata (Fig. 9). Mean values ranged from -19.53‰ to -15.44‰ with the least negative
values occurring in the middle Holocene samples (approximately 5,200 years ago) and the most
negative values occurring in the modern samples (Table 1). Variation within each stratum was
often greater than the difference between strata. The spread of δ13
C values within time periods
ranged from approximately 2‰ - 8‰ (Table 3).
Fig. 9 All δ13
C values (‰) for each stratum with mean values indicated by the curve and standard
deviations indicated by the vertical lines. Left inset shows expanded view of δ13
C values for
bones aged 1, 7, and 25 years. Right shows values for bones aged 287.5 and 317.5 years.
17
Table 1 Average δ13
C and δ15
N values (‰) and standard deviations calculated for each age
group. Binned groups indicated by alternated shading. Averages and standard deviations
calculated for binned age groups. Ages represent years before present (2014).
Table 2 One-way analysis of variance (ANOVA) of binned age group means for δ13
C data.
Acronyms defined as: degrees of freedom (DF), sum of squares (SS), mean square error (MS), the
F test statistic (F), and p-value (P).
Source DF SS MS F P
Age (years BP) 3 15.29 5.10 1.02 0.394
Error 52 261.15 5.02
Total 55 276.44
Age
(years BP)
Average δ13
C
(‰)
Binned δ13
C
Average
Average δ15
N
(‰)
Binned δ15
N
Average
1 -19.53 ± 0.67
Modern
-18.21 ± 2.09
11.86 ± 2.48
Modern
13.69 ± 3.00
7 -18.38 ±1.74 16.45 ± 0.63
25 -16.44 ± 2.56 12.59 ± 3.15
287.5 -17.84 ± 2.44
Pre-modern-
3000
-17.45 ± 1.70
12.61 ± 3.43
Pre-modern-
3000
12.05 ± 3.44
317.5 -16.69 ± 2.07 11.73 ± 3.52
1512.7 -17.66 ± 0.98 10.76 ± 3.36
2955.4 -17.71 ± 1.20 13.43 ± 3.94
3552.6 -18.15 ± 2.82 3500-6000
-16.92 ± 2.97
9.38 ± 1.55 3500-6000
12.01 ± 3.895232.9 -15.44 ± 2.66 15.18 ± 3.45
7170.7 -16.82 ± 2.92
>6000
-16.82 ± 2.92
14.05 ± 1.54
>6000
14.05 ± 1.54
18
Table 3 δ13
C and δ15
N values (‰) generated through mass spectrometry analysis of D. microps
bone collagen. Divided by age group.
Stratum
Mandible
Identifier
Age
(years BP)
δ13
C Value (‰) δ15
N Value (‰)
TLC TL 8.13 8.13.1 1 -20.62 11.62
TLC TL 8.13 8.13.2 1 -19 10.98
TLC TL 8.13 8.13.3 1 -19.27 14.65
TLC BL 8.13 8.13.4 1 -18.88 15.03
TLC BL 8.13 8.13.5 1 -19.37 9.04
TLC BL 8.13 8.13.6 1 -20.05 9.81
TLC 4.07 4335/4336 7 -15.2 17.09
TLC 4.07 4341/4342 7 -18.11 16.16
TLC 4.07 4347 7 -18.1 15.82
TLC 4.07 4339/4340 7 -19.23 16.98
TLC 4.07 4337/4338 7 -19.74 15.72
TLC 4.07 4348/4349 7 -19.9 16.95
TLCI5 Sample35 25 -16.35 7.17
TLCI7 Sample36 25 -20.5 12.49
TLCI14 Sample4 25 -13.37 14.66
TLCI16 Sample37 25 -15.98 14.35
TLCI17 Sample38 25 -16.01 14.27
TLC D4 Spit 1 2559 287.5 -18.76 16.93
TLC D4 Spit 1 2561 287.5 -18.9 13.12
TLC D4 Spit 1 2562 287.5 -20.4 9.01
TLC D4 Spit 1 2564 287.5 -13.99 14.67
TLC D4 Spit 1 2565 287.5 -17.15 9.31
TLC D4 Spit 3 2571 317.5 -19.33 10.56
TLC D4 Spit 3 2574 317.5 -16.42 10.9
TLC D4 Spit 3 2575 317.5 -15.35 14.48
TLC D4 Spit 4 2578 317.5 -14.31 17.21
TLC D4 Spit 4 2579 317.5 -19.09 7.43
TLC D4 Spit 4 2580 317.5 -15.64 9.77
TLC D4 Spit 7 2584 1512.7 -17.16 8.2
TLC D4 Spit 7 2585 1512.7 -17.23 8.16
TLC D4 Spit 7 2586 1512.7 -17.39 17.09
TLC D4 Spit 7 2587 1512.7 -17.39 10.62
TLC D4 Spit 7 2588 1512.7 -17.12 11.37
TLC D4 Spit 7 2589 1512.7 -19.64 9.12
TLC D4 Spit 11 2597 2955.4 -18.16 16.17
TLC D4 Spit 11 2598 2955.4 -16.2 8.67
TLC D4 Spit 11 2599 2955.4 -18.29 10.26
TLC D4 Spit 11 2600 2955.4 -19.14 18.06
TLC D4 Spit 11 2601 2955.4 -16.78 13.99
TLC D4 Spit 12 2602 3552.6 -21.33 10.72
TLC D4 Spit 12 2603 3552.6 -13.34 7.73
TLC D4 Spit 12 2605 3552.6 -19.26 11.35
TLC D4 Spit 13 2606 3552.6 -16.52 10.15
TLC D4 Spit 13 2607 3552.6 -19.52 8.12
TLC D4 Spit 13 2609 3552.6 -18.93 8.19
19
Table 3 (continued)
Stratum
Mandible
Identifier
Age (years BP) δ13
C Value (‰) δ15
N Value (‰)
TLC D4 Spit 15 2610 5232.9 -14.34 14.61
TLC D4 Spit 15 2611 5232.9 -12.45 13.89
TLC D4 Spit 15 2612 5232.9 -14.69 15.04
TLC D4 Spit 16 2613 5232.9 -16.12 20.85
TLC D4 Spit 17 2614 5232.9 -19.59 11.51
TLC D4 Spit 18 2616 7170.7 -19.72 13.87
TLC D4 Spit 19 2620 7170.7 -19.1 11.69
TLC D4 Spit 19 2621 7170.7 -11.78 15.26
TLC D4 Spit 19 2622 7170.7 -16.69 15.49
TLC D4 Spit 20 2626 7170.7 -15.49 15.16
TLC D4 Spit 20 2627 7170.7 -18.14 12.84
3.2 Cross-correlation Analysis of δ13
C and δ18
O
δ18
O paleoclimate data (Fig. 10) for Pyramid Lake, Nevada, obtained from the literature
did not explain a significant portion of variance in the δ13
C data (p = 0.074, R2
= 0.064), although
δ13
C varied inversely with δ18
O. Less negative δ13
C values corresponded to low δ18
O values and
more negative δ13
C values corresponded to high δ18
O values (Fig. 11).
Fig. 10 δ18
O values (‰) with a moving averages trendline (Benson et al. 2002).
20
Fig. 11 Cross-correlation analysis of δ18
O and δ13
C time series data. R2
= 0.064, p = 0.074.
3.3 δ15
N Analysis
There was no significant difference between average δ15
N values of each binned age
group [F(3, 52) = 1.31, p = 0.281] (Table 4). As with the δ13
C data, there was a fair amount of
overlap between each bin’s IQR (Fig. 12). Mean binned δ15
N values fell between approximately
12‰ and 14‰, and the difference between the highest and lowest value was greater than that of
the binned δ13
C data (Table 1). In contrast to the δ13
C data, binned δ15
N values showed no
unidirectional trend. The oldest and youngest bins possessed the most similar and highest mean
values, while the two middle bins (Pre-modern – 3000 and 3500 – 6000) also showed very similar
mean values.
A time series of all δ15
N values and stratum averages showed more fluctuation over the
range of sample ages than did the δ13
C data (Fig. 13). Mean values fell between 9.38‰ and
16.45‰ (Table 1). Variation in δ15
N within each stratum was notable, with a range of values from
21
approximately 1.5‰ - 10‰ (Table 3). There was a greater difference between stratum mean
values than was exhibited by the δ13
C data.
Fig. 12 δ15
N values binned into broad time groups based on periods of shared climate. For
classification of age bins see Fig. 8. Median values are indicated by the horizontal lines within the
boxplots and a trendline shows the mean value of each binned age group.
Table 4 One-way analysis of variance (ANOVA) of binned age group means for δ15
N
data. For definitions of acronyms, see Table 2.
Source DF SS MS F P
Age (years BP) 3 42.0 14.0 1.31 0.281
Error 52 556.9 10.7
Total 55 598.9
22
Fig. 13 All δ15
N values (‰) for each stratum with average values indicated by the trendline and
standard deviations indicated by the vertical lines. Left inset shows expanded view δ15
N values
for bones aged 1, 7, and 25 years. Right shows values for bones aged 287.5 and 317.5 years.
3.4 Comparisons Among Sympatric Species
Of the sympatric species that occur with D. microps at Two Ledges Chamber, O.
torridus’ average δ15
N value of 13.07‰ was the only one that exceeded that of D. microps,
(12.59‰ – Table 5). All other small mammal species exhibited values between 6.9‰ and
11.89‰ (Table 5). The majority of these specimens exhibited average δ13
C values more negative
than D. microps (Fig. 14). P maniculatus was the only species to exhibit a δ13
C value less
negative than that of D. microps, -15.46‰ and -16.44‰ respectively (Table 5).
23
Fig. 14 Average δ15
N and δ13
C values of D. microps and other sympatric small mammal species.
Samples aged 25 years (Terry, unpublished data).
Table 5 Average δ15
N and δ13
C values and standard deviations of D. microps and other sympatric
small mammal species. Samples aged 25 years (Terry, unpublished data).
Species Average δ13
C (‰) Average δ15
N (‰)
Chaetodipus formosus -20.06 ± 0.54 6.90 ± 0.34
Dipodomys microps -16.44 ± 2.56 12.59 ± 3.15
Neotoma lepida -20.99 ± 0.87 8.87 ± 1.50
Onychomys torridus -17.92 ± 0.55 13.07 ± 3.19
Perognathus longimembris -18.82 ± 1.98 11.89 ± 1.81
Peromyscus maniculatus -15.46 ± 4.53 10.36 ± 0.96
Reithrodontomys megalotis -19.46 ± 1.53 8.09 ± 2.87
24
3.5 Cross-correlation Analysis of δ15
N and δ18
O
Variance in the δ15
N data was not explained by change in δ18
O paleoclimate data (p =
0.739, R2
= 0.002) and there was little to no relationship between time series of the two isotopes
(Fig. 15).
Fig. 15 Cross-correlation analysis of δ18
O and δ15
N time series. R2
= 0.002, p = 0.739.
25
3.6 Variance in δ13
C and δ15
N values
For both the δ13
C and δ15
N data, fluctuation in variance within each age group was
evident (Fig. 16). The highest δ13
C variance occurred in the oldest samples (aged approximately
3,500 – 8,000 years) and remained fairly constant until approximately 3,500 years BP, at which
point it dropped markedly until rising again approximately 1,000 years BP and dropping into the
modern (Fig. 16). δ15
N variance appears to have experienced more change than that of δ13
C, with
peaks approximately 5,200 and 3,000 years before present and lows at approximately 3,500 and
1,500 years BP. For both data series, the lowest variance values occurred in the youngest samples
(aged 1-7 years). Positive and negative trends in the δ13
C and δ15
N data varied inversely until
approximately 1,500 years BP, when a more parallel relationship appeared (Fig 16).
Fig. 16 Variance in δ13
C (solid line) and δ15
N (dashed line) data.
26
3.7 Diastema Length Analysis
Little variation was apparent among diastema length values separated into binned age
groups. No significant difference was found between the mean values of these bins [F(3, 40) =
0.07, p = 0.973] (Table 6), which ranged from 5.44 mm to 5.50 mm (Table 7). Bin interquartile
ranges fell between approximately 5.15 mm and 5.80 mm with the three smaller ranges falling
within the largest (Fig 17). Average values were fairly constant through time.
A time series of all diastema length values and average stratum values showed slightly
more fluctuation (Fig. 18). Average values ranged from 5.17 mm to 5.73 mm (Table 7) and
variation within strata fell between approximately 0.100 mm and 1.400 mm (Table 8). Calculated
variance values ranged from 0.006 mm to 0.241 mm (Fig. 19).
Fig. 17 Diastema length (mm) of D. microps mandibles binned into broad age groups based on
climate trends. For classification of age bins, see Fig 8. Data were not available for bones aged 25
years and were not included in the analysis. Median values are marked on the chart with a
horizontal line and a trendline shows the mean value for each age bin.
27
Table 6 One-way analysis of variance (ANOVA) of binned age group means for diastema length
data. For definitions of acronyms, see Table 2.
Source DF SS MS F P
Age (years BP) 3 0.025 0.008 0.07 0.973
Error 40 4.556 0.114
Total 43 4.582
Table 7 Average diastema length values (mm) and standard deviations calculated for each
stratum. Binned groups indicated by alternated shading. Averages and standard deviations
calculated for binned age groups. Ages represent years before present (2014).
Age (years BP)
Average Diastema
Length (mm)
Binned Diastema
Length Average (mm)
1 5.57 ± 0.225 Modern
5.46 ± 0.3827 5.35 ± 0.491
287.5 5.45 ± 0.245
Pre-modern – 3000
5.44 ± 0.300
317.5 5.56 ± 0.323
1512.7 5.48 ± 0.214
2955.4 5.17 ± 0.353
3552.6 5.42 ± 0.420 3500 – 6000
5.50 ± 0.3765232.9 5.73 ± 0.078
7170.7 5.48 ± 0.413
>6000
5.48 ± 0.340
28
Fig. 18 Time series of all diastema length (mm) values for each stratum with average values
indicated by the trendline and standard deviations indicated by the vertical lines. Left inset shows
expanded view of lengths for bones aged 1 and 7 years. Right shows lengths of bones aged 287.5
and 317.5 years.
Fig. 19 Variance in diastema length data (mm).
29
Table 8 All diastema length values (mm). Diastema length data unavailable for bones aged 25
years. Other specimens excluded due to bone breakage.
Stratum Mandible Identifier
Age
(years BP)
Diastema Length (mm)
TLC TL 8.13 8.13.1 1 5.88
TLC TL 8.13 8.13.2 1 5.22
TLC TL 8.13 8.13.3 1 5.48
TLC BL 8.13 8.13.4 1 5.73
TLC BL 8.13 8.13.5 1 5.53
TLC BL 8.13 8.13.6 1 5.58
TLC 4.07 4335/4336 7 6.04
TLC 4.07 4341/4342 7 4.61
TLC 4.07 4347 7 5.26
TLC 4.07 4339/4340 7 5.35
TLC 4.07 4337/4338 7 5.71
TLC 4.07 4348/4349 7 5.14
TLCI5 Sample35 25 5.58
TLCI7 Sample36 25 5.45
TLCI14 Sample4 25 5.26
TLCI16 Sample37 25 5.78
TLCI17 Sample38 25 5.17
TLC D4 Spit 1 2559 287.5 5.64
TLC D4 Spit 1 2561 287.5 4.98
TLC D4 Spit 1 2562 287.5 5.88
TLC D4 Spit 1 2564 287.5 5.55
TLC D4 Spit 1 2565 287.5 5.83
TLC D4 Spit 3 2571 317.5 5.5
TLC D4 Spit 3 2574 317.5 5.36
TLC D4 Spit 3 2575 317.5 5.47
TLC D4 Spit 4 2578 317.5 5.88
TLC D4 Spit 4 2579 317.5 5.25
TLC D4 Spit 4 2580 317.5 5.48
TLC D4 Spit 7 2584 1512.7 5.44
TLC D4 Spit 7 2585 1512.7 -
TLC D4 Spit 7 2586 1512.7 5.36
TLC D4 Spit 7 2587 1512.7 4.74
TLC D4 Spit 7 2588 1512.7 5.04
TLC D4 Spit 7 2589 1512.7 5.54
TLC D4 Spit 11 2597 2955.4 5.6
TLC D4 Spit 11 2598 2955.4 5.72
TLC D4 Spit 11 2599 2955.4 -
TLC D4 Spit 11 2600 2955.4 5.28
TLC D4 Spit 11 2601 2955.4 5.74
30
Table 8 (continued)
Stratum Mandible Identifier
Age
(years BP)
Diastema Length (mm)
TLC D4 Spit 12 2602 3552.6 4.74
TLC D4 Spit 12 2603 3552.6 5.88
TLC D4 Spit 12 2605 3552.6 5.22
TLC D4 Spit 13 2606 3552.6 5.48
TLC D4 Spit 13 2607 3552.6 5.73
TLC D4 Spit 13 2609 3552.6 5.53
TLC D4 Spit 15 2610 5232.9 5.78
TLC D4 Spit 15 2611 5232.9 -
TLC D4 Spit 15 2612 5232.9 -
TLC D4 Spit 16 2613 5232.9 5.67
TLC D4 Spit 17 2614 5232.9 -
TLC D4 Spit 18 2616 7170.7 -
TLC D4 Spit 19 2620 7170.7 5.06
TLC D4 Spit 19 2621 7170.7 5.55
TLC D4 Spit 19 2622 7170.7 5.88
TLC D4 Spit 20 2626 7170.7 -
TLC D4 Spit 20 2627 7170.7 5.41
31
3.8 Cross-correlation Analysis of Diastema Length and δ18
O
The variance in diastema length was not explained by the δ18
O paleoclimate data (p =
0.826, R2
= 0.001). There was little to no relationship visible between the two variables (Fig. 20).
Fig. 20 Cross-correlation analysis of diastema length (mm) and δ18
O time series. R2
=
0.001, p = 0.826.
32
DISCUSSION
4.1 Introduction
Recent changes in global climate have put many species at risk, particularly those
classified as niche specialists, who rely on very specific aspects of their habitats to survive. As a
diet specialist, D. microps would be expected to be tied to locations where the plant on which it
specializes, A. confertifolia, is able to grow. As A. confertifolia’s distribution throughout the
deserts of the Great Basin shifted (Spaulding 1990), D. microps would be expected to track it.
However, variation (genotypic and/or ecophenotypic) can allow species to potentially persist in
place and respond to a strong directional selective pressure. Analysis of variation in body size,
δ13
C values and δ15
N values within and between time periods (spanning the past 8,000 years)
allowed us to assess the ability of D. microps to adapt behaviorally and physiologically in order
to persist in place throughout climatic changes in the Great Basin.
4.2 δ13
C
Average δ13
C values derived from isotopic analysis of D. microps bone collagen showed
variation within and between strata. These values provide insight into the type of plants that make
up the bulk of D. microps’ diet, previously thought to consist almost entirely of leaves from the
desert shrub, Atriplex confertifolia. These leaves exhibit a δ13
C value of approximately -16‰ to
-15‰ (Pedicino et al. 2002) with fractionation upon consumption of about 1‰. Bone collagen of
a D. microps specimen feeding only on A. confertifolia would have an expected δ13
C value of
about -14‰ to -15‰. At an average of -15.44‰ ± 2.66‰, samples in the 5232.9-year age group
exhibited δ13
C values closest to this range. It is likely that at this point in D. microps’ natural
history, shadscale leaves represented a larger portion of total diet than they do in modern samples.
During the middle Holocene (7,500 – 4,500 years ago), climate was thought to be warmer and
33
drier than it is today (Grayson 2011). This regional trend favored the growth of desert shrubs over
that of annual grasses, which would have likely increased the abundance of Atriplex in the local
area (Grayson 2011).
Theoretically, the current trend toward a warmer and more arid climate, indicated by
higher δ18
O values as well as historical data (compiled by the Western Regional Climate Center),
would also favor A. confertifolia growth and an increase in its abundance. This would be reflected
within D. microps’ bone collagen as less negative δ13
C values with low deviation between
individuals. This trend, however, was not found within the data. The majority of strata exhibited
average δ13
C ranges of -19.53‰ to -16.44‰, values too high to represent diets composed entirely
of shadscale leaves. Standard deviations within age groups fell between 0.67‰ and 2.82‰. This
variation indicated that individual kangaroo rat diets were composed of unique proportions of
certain types of plants, each with distinct δ13
C signatures. Despite correcting for the Seuss effect
(Rubino et al. 2013), modern δ13
C values—ages 1, 7, and 25 years—were still more negative than
older samples, indicating a true biological shift as opposed to an abiotic signal driven by
anthropogenic burning of fossil fuels. The diets of these individuals likely included a combination
of A. confertifolia (C4) leaves and seeds or leaves from C3 plants (median δ13
C value of -27‰).
The relatively more negative δ13
C values of C3 plants would draw down the average value of
modern strata. An increase in abundance of C3 plants in the Great Basin would also impact these
values.
Bromus tectorum, commonly called cheatgrass, is an invasive annual grass originating in
Eurasia that has increased in abundance within D. microps’ habitat over the past century (Ostoja
and Schupp 2009, Schaeffer et al. 2011). Appearing in North America in the late 1800s,
cheatgrass has since covered approximately 40 million hectares, providing a continuous source of
fuel for fires and placing sagebrush ecosystems and the native fauna that inhabit them at risk
(Ostoja and Schupp 2009).
34
Employing the C3 photosynthetic pathway, cheatgrass exhibits a δ13
C value of -26.9‰ to
-26.1‰ (Svejcar and Boutton 1985, Schaeffer et al. 2011). If the seeds of this plant were
contributing to D. microps’ diet, a more negative δ13
C bone collagen value would be evident.
Although it is possible that other C3 plants are contributing to the more negative modern δ13
C
values, low variance in modern strata, compared to that of older strata, suggests that the diet of
modern populations of D. microps is composed of fewer plant types than the diet of older
populations. Therefore, it is likely that only a few C3 plants, or even just one, with fairly negative
δ13
C values are pulling down the modern values. Because of this, it is possible that cheatgrass
now represents an increasingly large portion of D. microps’ diet.
The introduction and subsequent invasion of B. tectorum has resulted in decreased rodent
abundance and richness within the Great Basin (Ostoja and Schupp 2009). For Heteromyids such
as D. microps, the rapid expansion in cheatgrass abundance has caused a decrease in diversity of
microhabitats, making it difficult for species which were once able to co-exist in the same area to
continue to do so (Ostoja and Schupp 2009). In addition to experiencing the effects of climate
change, ecosystems within the Great Basin are being upset by the introduction of invasive species
such as cheatgrass, which force native species to adapt to ever increasing changes in their
habitats.
4.3 δ15
N
δ15
N values reportedly increase with decreasing precipitation and increasing temperature
(Koch 2007), a climate trend indicated by higher δ18
O values. If climate were driving the δ15
N
values recorded by D. microps specimens, one would expect to see a parallel relationship emerge
in a cross-correlation analysis of δ15
N and δ18
O, with δ15
N values increasing as temperatures (and
δ18
O values) rise over time. This pattern was not reflected in the δ15
N values of D. microps bone
35
collagen, which showed little to no relationship with the δ18
O data. Fluctuations in the δ15
N data
are therefore not explained by changes in climate.
δ15
N values can also be used to assess the amount of animal protein an organism
consumes and therefore the trophic level at which it is feeding. In a preliminary study of multiple
modern small mammal species at Two Ledges Chamber, Terry and Koch (unpublished) show that
other species that coexist with D. microps in the Smoke Desert exhibit average δ15
N values
between 6.9‰ and 13.07‰. Not surprisingly, the highest δ15
N values were exhibited by
Onychomys torridus, a Murid rodent commonly called the Grasshopper Mouse, which feeds
mainly on arthropods, insects, and other sources of animal protein (Langley 1987). Average δ15
N
values for D. microps were, somewhat surprisingly, very similar to the average of O. torridus.
Perognathus longimembris, the pocket mouse, is a member of the family Heteromyidae, to which
D. microps also belongs. Unlike D. microps, however, this species is a granivore, not an
herbivore. This species also exhibited relatively high δ15
N values compared to those of other
small mammals found within the Great Basin. It would seem possible that some shared aspect of
P. longimembris’ and D. microps’ physiology could account for the high δ15
N values exhibited by
the two species (since neither is known to consume animal protein). However, Chaetodipus
formosus, the long-tailed pocket mouse and another member of the family Heteromyidae,
exhibited relatively low δ15
N values (in the expected range for a granivore), complicating the
inference of a physiological characteristic that is shared between D. microps and its relatives.
Thus, the high δ15
N values found in D. microps bone collagen deserves further
exploration and might be explained, at least in part, by D. microps’ consumption of some source
of animal protein. Interestingly, D. microps δ15
N values have been consistently high over the past
8,000 years at this site, indicating that consumption of animal protein (or some other mechanism
responsible for enriching δ15
N in the bone collagen) is not a recent response to the known
alteration of the resource base by cheatgrass.
36
4.4 Variance in δ13
C and δ15
N
Variance in the δ13
C and δ15
N data, from approximately 1,500 years BP to the present,
showed a parallel relationship with the lowest values for both isotopes occurring in modern strata,
indicating a decrease in the range of food items consumed relative to the Holocene. The
relationship between δ13
C and δ15
N variance for samples older than 1,500 years shifted from
parallel to inverse. High variance in δ13
C corresponded to low variance in δ15
N, the opposite of
which was also true. Within strata, this indicated that as the range of plants D. microps was
consuming increased (indicated by an increase in δ13
C variance), the range of δ15
N sources (i.e.
animal protein) decreased. This pattern may have resulted from changes in availability of food
sources over time and might reflect shifts in the dominant strategy employed by D. microps to
increase niche flexibility throughout its natural history.
4.5 Diastema Length
Given a local trend of increasing temperature and decreasing precipitation (as evidenced
by increasing δ18
O values), D. microps diastema length would be expected to decrease if the
species were conforming to Bergmann’s rule. However, a cross-correlation analysis of δ18
O and
body size showed no relationship between the two variables. There was very low variation in
diastema length between strata with no apparent trends in size. Thus, these results did not affirm
Bergmann’s rule. This result is notable because it indicates that D. microps is not experiencing a
change in body size (which can reflect a physiological response to a changing environment), but
suggests that D. microps is responding to changing conditions by shifting its dietary niche
instead.
37
4.6 Conclusions
Due to insignificant changes in body size over the study period, a physiological response
by D. microps to changes in climate was not apparent. However, δ13
C values often fell outside of
the expected C4 range, indicating that D. microps is capable of consuming plants other than A.
confertifolia in the Great Basin in order to persist in places where the shrub may not grow. This
behavioral adaptation allows D. microps to shift its niche, which means that the species is less of
a dietary specialist than was previously thought. δ15
N values did not follow the trend expected
from climate change and were also higher than would be expected of an organism consuming
only plant leaves. Comparison of D. microps’ δ15
N values to sympatric species from the same
location showed that the species could be consuming animal protein, another behavioral change
that would allow D. microps to shift its niche.
Possible sources of error within the study were accounted for by the removal of data for
bones which had been diagenetically altered, as well as correcting for the Seuss effect in modern
δ13
C values. However, several factors that could influence the reliability of the results likely
remained. For example, selection of specimens was not random as analyses were conducted using
the samples that were available (with preference for larger intact specimens likely to yield enough
collagen for analysis). Sample sizes (numbers of bones per stratum) were also fairly small (N =
6), increasing the susceptibility of the results to outliers and stochasticity. Despite this, the results
of this study are intriguing and the implications are important for understanding how animals
persist on the landscape through periods of climate change.
The ability of D. microps to shift its dietary niche means that the species will likely be
somewhat buffered to current and future changes in climate and habitat availability in the Great
Basin. Other species classified as niche specialists may also be capable of behavioral and/or
physiological responses and thus may possess more of an ability to adapt to climate change than
was previously thought. Understanding which species are capable of these responses and why
38
some may be more successful than others will allow us to predict the magnitude of the impact of
a changing climate and to perhaps focus conservation efforts on species which are least likely to
be able to adapt to our changing world.
39
LITERATURE CITED
Baumgardener GD, Kennedy ML (1994) Patterns of morphometric variation in kangaroo rats
(Genus Dipodomys). Journal of Mammalogy 75: 203-211, 10.2307/1382252
Benson L, et al. (2002) Holocene multidecadal and multicentennial droughts affecting Northern
California and Nevada. Quaternary Science Reviews 21: 659-682, 10.1016/S0277-
3791(01)00048-8
Coltrain JB, Janetski JC (2013) The stable and radio-isotope chemistry of southeastern Utah
Basketmaker II burials: dietary analysis using the linear mixing model SISUS, age and sex
patterning, geolocation and temporal patterning. Journal of Archaeological Science 40: 4711-
4730
D. microps [photograph] (2010). Retrieved May 2014, from:
http://www.mammalogy.org/dipodomys-microps-1691
Grayson D (2011) The Great Basin: a natural prehistory. Berkeley, CA: University of California
Press.
Hayssen V (1991) Dipodomys microps. Mammalian Species 389: 1-9.
Jezkova T, Olah-Hemmings V, Riddle BR (2011) Niche shifting in response to warming climate
after the last glacial maximum: inference from genetic data and niche assessments in the chisel-
toothed kangaroo rat (Dipodomys microps). Global Change Biology 17: 3486-3502,
10.1111/j.1365-2486.2011.02508.x
Kenagy, GJ (1973) Adaptations for leaf eating in the great basin kangaroo rat Dipodomys
microps. Oecologia12.4: 383-412, 10.1007/BF00345050
Koch, PL (2007) Isotopic study of the biology of modern and fossil vertebrates. In R Michener
and K Lajtha (Eds.), Stable isotopes in ecology and environmental science (pp. 99-154). Malden,
MA: Blackwell Publishing Ltd.
Langley WM (1987) Specializations in the predatory behavior of grasshopper mice (Onychomys
leucogaster and O. torridus): a comparison with the golden hamster (Mesocricetus auratus).
Journal of Comparative Psychology 101: 322-327, 10.1037/0735-7036.101.4.322
Map showing the Great Basin drainage basin as defined hydrologically. [Image] (2010).
Retrieved May 2014 from: http://commons.wikimedia.org/wiki/File:Greatbasinmap.png
Marshal JD, Brooks JR, Lajtha K (2007) Sources of variation in the stable isotopic composition
of plants. In R Michener and K Lajtha (Eds.), Stable isotopes in ecology and environmental
science (pp. 22-60). Malden, MA: Blackwell Publishing Ltd.
Meiri S, Dayan T (2003) On the validity of Bergmann's rule. Journal of Biogeochemistry 30: 331-
351, 10.1046/j.1365-2699.2003.00837.x
O’Leary MH (1988) Carbon isotopes in photosynthesis: fractionation techniques may reveal new
aspects of carbon dynamics in plants. BioScience 38: 328-336, 10.2307/1310735
40
Ostoja SM, Schupp EW (2009) Conversion of sagebrush shrublands to exotic annual grasslands
negatively impacts small mammal communities. Diversity Distrib. 15: 863-870, 10.1111/j.1472-
4642.2009.00593.x
Pedicino LC, et al. (2002) Historical Variations in δ13
C leaf of Herbarium Specimens in the
Southwestern U.S. Western North American Naturalist 62: 348-359.
Post DM (2002) Using stable isotopes to estimate trophic position: models, methods and
assumptions. Ecology 83: 703–718, 10.1890/0012-9658(2002)083[0703:USITET]2.0.CO;2
Rubino M, et al. (2013) A revised 1000 year atmospheric δ13
C -CO2 record from Law Dome and
South Pole, Antarctica. Journal of Geophysical Research 118: 8482-8499, 10.1002/jgrd.50668
Sandquist DR, Ehleringer JR (1995) Carbon isotope discrimination in the C4 shrub Atriplex
confertifolia along a salinity gradient. Great Basin Naturalist 55: 135-141.
Schaeffer SM, et al. (2012) Effects of Bromus tectorum invasion on microbial carbon and
nitrogen cycling in two adjacent undisturbed arid grassland communities. Biogeochemistry 111:
427-441, 10.1007/s10533-011-9668-x
Spaulding AW (1990) Vegetational and climatic development of the Mojave Desert:
The last glacial maximum to the Present. In JL Betancourt, TR Van Devender, and PS Martin
(Eds.), Packrat Middens: The Last 40,000 Years of Biotic Change (pp. 200–239). Tucson, AZ:
The University of Arizona Press.
Svejcar T J, Boutton TW (1985) The use of stable carbon isotope analysis in rooting studies.
Oecologia 67: 205-208, 10.1007/BF00384284
Sweeting C, et al. (2007) Effects of body size and environment on diet-tissue δ13
C fractionation in
fishes. Journal of Experimental Marine Biology and Ecology 352: 165-176,
10.1016/j.jembe.2007.07.007
Terry, RC (2008) Raptors, Rodents, and Conservation Paleobiology. Doctoral Thesis. University
of Chicago.
Terry RC, et al. (2011) Predicting small mammal response to climatic warming: autecology,
geographic range, and the Holocene fossil record. Global Change Biology 17: 3019-3034,
10.1111/j.1365-2486.2011.02438.x
USDA, NRCS (2014) Shadscale saltbush plant guide. National Plant Data Team, Greensboro, NC
27401-4901 USA.
Vander Zanden MJ, Rasmussen JB (2001) Variation in δ15
N and δ13
C trophic fractionation:
Implications for aquatic food web studies. Limnol. Oceanogr. 46: 2061-2066.

More Related Content

What's hot

Generalizing phylogenetics to infer shared evolutionary events
Generalizing phylogenetics to infer shared evolutionary eventsGeneralizing phylogenetics to infer shared evolutionary events
Generalizing phylogenetics to infer shared evolutionary eventsJamie Oaks
 
Climate change impact on the seaweed Fucus serratus, a key foundational speci...
Climate change impact on the seaweed Fucus serratus, a key foundational speci...Climate change impact on the seaweed Fucus serratus, a key foundational speci...
Climate change impact on the seaweed Fucus serratus, a key foundational speci...Alexander Jueterbock
 
Range shifts and adaptive responses during ice ages and recent global warming...
Range shifts and adaptive responses during ice ages and recent global warming...Range shifts and adaptive responses during ice ages and recent global warming...
Range shifts and adaptive responses during ice ages and recent global warming...Alexander Jueterbock
 

What's hot (6)

Final Report
Final ReportFinal Report
Final Report
 
publications
publicationspublications
publications
 
Generalizing phylogenetics to infer shared evolutionary events
Generalizing phylogenetics to infer shared evolutionary eventsGeneralizing phylogenetics to infer shared evolutionary events
Generalizing phylogenetics to infer shared evolutionary events
 
Climate change impact on the seaweed Fucus serratus, a key foundational speci...
Climate change impact on the seaweed Fucus serratus, a key foundational speci...Climate change impact on the seaweed Fucus serratus, a key foundational speci...
Climate change impact on the seaweed Fucus serratus, a key foundational speci...
 
Range shifts and adaptive responses during ice ages and recent global warming...
Range shifts and adaptive responses during ice ages and recent global warming...Range shifts and adaptive responses during ice ages and recent global warming...
Range shifts and adaptive responses during ice ages and recent global warming...
 
samanthaposter
samanthapostersamanthaposter
samanthaposter
 

Viewers also liked

Paul Duer IT Resume 04 03
Paul Duer IT Resume 04 03Paul Duer IT Resume 04 03
Paul Duer IT Resume 04 03Paul Duer
 
Ptpp4 Dibujo*
Ptpp4 Dibujo*Ptpp4 Dibujo*
Ptpp4 Dibujo*YessHney
 
Demanda contra el Estado Venezolano
Demanda contra el Estado VenezolanoDemanda contra el Estado Venezolano
Demanda contra el Estado Venezolanocarloshumberto350
 
Como Aprender Inglês Sozinho
Como Aprender Inglês SozinhoComo Aprender Inglês Sozinho
Como Aprender Inglês SozinhoLeandro Habner
 
Diapositiva vargas
Diapositiva  vargasDiapositiva  vargas
Diapositiva vargasnewybradger
 
Seguridad y medidas de prevención.
Seguridad y medidas de prevención.Seguridad y medidas de prevención.
Seguridad y medidas de prevención.Aliciareyesrojas20
 
Dywizjon 303
Dywizjon 303 Dywizjon 303
Dywizjon 303 Anna Sz.
 
Business Pro Offers Customizable Payment System Solutions for e-Market
Business Pro Offers Customizable Payment System Solutions for e-MarketBusiness Pro Offers Customizable Payment System Solutions for e-Market
Business Pro Offers Customizable Payment System Solutions for e-MarketAllied Wallet
 
All the data and still not enough
All the data and still not enoughAll the data and still not enough
All the data and still not enoughAndreea Bodnari
 
Habitos y tecnicas de estudio
Habitos y tecnicas de estudioHabitos y tecnicas de estudio
Habitos y tecnicas de estudiodaaanyy
 
Providing physical autonomy to disabled people through telemonitoring and hom...
Providing physical autonomy to disabled people through telemonitoring and hom...Providing physical autonomy to disabled people through telemonitoring and hom...
Providing physical autonomy to disabled people through telemonitoring and hom...Eloisa Vargiu
 

Viewers also liked (20)

Paul Duer IT Resume 04 03
Paul Duer IT Resume 04 03Paul Duer IT Resume 04 03
Paul Duer IT Resume 04 03
 
Ptpp4 Dibujo*
Ptpp4 Dibujo*Ptpp4 Dibujo*
Ptpp4 Dibujo*
 
14- elnenenomecome
14- elnenenomecome14- elnenenomecome
14- elnenenomecome
 
Pantallazo n° 1
Pantallazo n° 1Pantallazo n° 1
Pantallazo n° 1
 
Demanda contra el Estado Venezolano
Demanda contra el Estado VenezolanoDemanda contra el Estado Venezolano
Demanda contra el Estado Venezolano
 
Guia examen de_ingreso_nivel_superior
Guia examen de_ingreso_nivel_superiorGuia examen de_ingreso_nivel_superior
Guia examen de_ingreso_nivel_superior
 
Como Aprender Inglês Sozinho
Como Aprender Inglês SozinhoComo Aprender Inglês Sozinho
Como Aprender Inglês Sozinho
 
Diapositiva vargas
Diapositiva  vargasDiapositiva  vargas
Diapositiva vargas
 
16- pisycaca
16- pisycaca16- pisycaca
16- pisycaca
 
15- elnenenomecome ii
15- elnenenomecome ii15- elnenenomecome ii
15- elnenenomecome ii
 
Seguridad y medidas de prevención.
Seguridad y medidas de prevención.Seguridad y medidas de prevención.
Seguridad y medidas de prevención.
 
Dywizjon 303
Dywizjon 303 Dywizjon 303
Dywizjon 303
 
Teoría de nietzsche
Teoría de nietzscheTeoría de nietzsche
Teoría de nietzsche
 
Resumen de la teoría de platón.
Resumen de la teoría de platón.Resumen de la teoría de platón.
Resumen de la teoría de platón.
 
Business Pro Offers Customizable Payment System Solutions for e-Market
Business Pro Offers Customizable Payment System Solutions for e-MarketBusiness Pro Offers Customizable Payment System Solutions for e-Market
Business Pro Offers Customizable Payment System Solutions for e-Market
 
All the data and still not enough
All the data and still not enoughAll the data and still not enough
All the data and still not enough
 
Apresentação2
Apresentação2Apresentação2
Apresentação2
 
Habitos y tecnicas de estudio
Habitos y tecnicas de estudioHabitos y tecnicas de estudio
Habitos y tecnicas de estudio
 
Providing physical autonomy to disabled people through telemonitoring and hom...
Providing physical autonomy to disabled people through telemonitoring and hom...Providing physical autonomy to disabled people through telemonitoring and hom...
Providing physical autonomy to disabled people through telemonitoring and hom...
 
PhD_Dissertation_HeZhang
PhD_Dissertation_HeZhangPhD_Dissertation_HeZhang
PhD_Dissertation_HeZhang
 

Similar to Guerre_Megan_UHCThesis

Dinkinas Tasisa 2024.docx
Dinkinas Tasisa 2024.docxDinkinas Tasisa 2024.docx
Dinkinas Tasisa 2024.docxgdirbabaa8
 
Distribution and Ecology of Diatoms
Distribution and Ecology of Diatoms Distribution and Ecology of Diatoms
Distribution and Ecology of Diatoms saran473135
 
2002 sa r.o. & langone j.a. 2002 the tadpole of
2002 sa r.o. & langone j.a. 2002 the tadpole of2002 sa r.o. & langone j.a. 2002 the tadpole of
2002 sa r.o. & langone j.a. 2002 the tadpole ofPedro Taucce
 
Unit 2 Introduction to environmental biology S2.pdf
Unit 2 Introduction to environmental biology S2.pdfUnit 2 Introduction to environmental biology S2.pdf
Unit 2 Introduction to environmental biology S2.pdfSafari5
 
Brochure_AENZ_04_HR_2_9_2014
Brochure_AENZ_04_HR_2_9_2014Brochure_AENZ_04_HR_2_9_2014
Brochure_AENZ_04_HR_2_9_2014Matthew Jones
 
Brown, James accepted thesis 11-24-15 Fa 15-3
Brown, James accepted thesis 11-24-15 Fa 15-3Brown, James accepted thesis 11-24-15 Fa 15-3
Brown, James accepted thesis 11-24-15 Fa 15-3James Brown
 
Makrinos and Bowden 2016
Makrinos and Bowden 2016Makrinos and Bowden 2016
Makrinos and Bowden 2016Daniel Makrinos
 
MB 3200 201 9 Marine Conservation .docx
MB 3200   201 9   Marine  Conservation  .docxMB 3200   201 9   Marine  Conservation  .docx
MB 3200 201 9 Marine Conservation .docxalfredacavx97
 
Evolution of environmental traits in reef algae
Evolution of environmental traits in reef algaeEvolution of environmental traits in reef algae
Evolution of environmental traits in reef algaeHeroen Verbruggen
 
Montoya-maya - 2009 - DYNAMICS OF LARVAL FISH AND ZOOPLANKTON IN SELECTED SOU...
Montoya-maya - 2009 - DYNAMICS OF LARVAL FISH AND ZOOPLANKTON IN SELECTED SOU...Montoya-maya - 2009 - DYNAMICS OF LARVAL FISH AND ZOOPLANKTON IN SELECTED SOU...
Montoya-maya - 2009 - DYNAMICS OF LARVAL FISH AND ZOOPLANKTON IN SELECTED SOU...Phanor Montoya-Maya
 
Influence of Enclosure Conditions and Visitors on the Behavior of Captive Mal...
Influence of Enclosure Conditions and Visitors on the Behavior of Captive Mal...Influence of Enclosure Conditions and Visitors on the Behavior of Captive Mal...
Influence of Enclosure Conditions and Visitors on the Behavior of Captive Mal...KALAI ARASI
 
Rising Ocean Temps and Coral
Rising Ocean Temps and CoralRising Ocean Temps and Coral
Rising Ocean Temps and CoralMichelle Jones
 
Alien Species Alert Crassostrea Gigas (Pacific Oyster)
Alien Species Alert  Crassostrea Gigas (Pacific Oyster)Alien Species Alert  Crassostrea Gigas (Pacific Oyster)
Alien Species Alert Crassostrea Gigas (Pacific Oyster)James Heller
 

Similar to Guerre_Megan_UHCThesis (20)

Dinkinas Tasisa 2024.docx
Dinkinas Tasisa 2024.docxDinkinas Tasisa 2024.docx
Dinkinas Tasisa 2024.docx
 
Distribution and Ecology of Diatoms
Distribution and Ecology of Diatoms Distribution and Ecology of Diatoms
Distribution and Ecology of Diatoms
 
2002 sa r.o. & langone j.a. 2002 the tadpole of
2002 sa r.o. & langone j.a. 2002 the tadpole of2002 sa r.o. & langone j.a. 2002 the tadpole of
2002 sa r.o. & langone j.a. 2002 the tadpole of
 
Unit 2 Introduction to environmental biology S2.pdf
Unit 2 Introduction to environmental biology S2.pdfUnit 2 Introduction to environmental biology S2.pdf
Unit 2 Introduction to environmental biology S2.pdf
 
Brochure_AENZ_04_HR_2_9_2014
Brochure_AENZ_04_HR_2_9_2014Brochure_AENZ_04_HR_2_9_2014
Brochure_AENZ_04_HR_2_9_2014
 
H0343044046
H0343044046H0343044046
H0343044046
 
Brown, James accepted thesis 11-24-15 Fa 15-3
Brown, James accepted thesis 11-24-15 Fa 15-3Brown, James accepted thesis 11-24-15 Fa 15-3
Brown, James accepted thesis 11-24-15 Fa 15-3
 
Western Honduras VA_ENGLISH_CLEARED
Western Honduras VA_ENGLISH_CLEAREDWestern Honduras VA_ENGLISH_CLEARED
Western Honduras VA_ENGLISH_CLEARED
 
Ijaret 06 10_010
Ijaret 06 10_010Ijaret 06 10_010
Ijaret 06 10_010
 
Biology Essay
Biology EssayBiology Essay
Biology Essay
 
Makrinos and Bowden 2016
Makrinos and Bowden 2016Makrinos and Bowden 2016
Makrinos and Bowden 2016
 
MB 3200 201 9 Marine Conservation .docx
MB 3200   201 9   Marine  Conservation  .docxMB 3200   201 9   Marine  Conservation  .docx
MB 3200 201 9 Marine Conservation .docx
 
Russing Thesis
Russing ThesisRussing Thesis
Russing Thesis
 
Evolution of environmental traits in reef algae
Evolution of environmental traits in reef algaeEvolution of environmental traits in reef algae
Evolution of environmental traits in reef algae
 
Montoya-maya - 2009 - DYNAMICS OF LARVAL FISH AND ZOOPLANKTON IN SELECTED SOU...
Montoya-maya - 2009 - DYNAMICS OF LARVAL FISH AND ZOOPLANKTON IN SELECTED SOU...Montoya-maya - 2009 - DYNAMICS OF LARVAL FISH AND ZOOPLANKTON IN SELECTED SOU...
Montoya-maya - 2009 - DYNAMICS OF LARVAL FISH AND ZOOPLANKTON IN SELECTED SOU...
 
Influence of Enclosure Conditions and Visitors on the Behavior of Captive Mal...
Influence of Enclosure Conditions and Visitors on the Behavior of Captive Mal...Influence of Enclosure Conditions and Visitors on the Behavior of Captive Mal...
Influence of Enclosure Conditions and Visitors on the Behavior of Captive Mal...
 
Rising Ocean Temps and Coral
Rising Ocean Temps and CoralRising Ocean Temps and Coral
Rising Ocean Temps and Coral
 
151 153RESEARCH ANALYSIS AND EVALUATION
151 153RESEARCH ANALYSIS AND EVALUATION151 153RESEARCH ANALYSIS AND EVALUATION
151 153RESEARCH ANALYSIS AND EVALUATION
 
Unit 1 ecosystem
Unit 1 ecosystemUnit 1 ecosystem
Unit 1 ecosystem
 
Alien Species Alert Crassostrea Gigas (Pacific Oyster)
Alien Species Alert  Crassostrea Gigas (Pacific Oyster)Alien Species Alert  Crassostrea Gigas (Pacific Oyster)
Alien Species Alert Crassostrea Gigas (Pacific Oyster)
 

Guerre_Megan_UHCThesis

  • 1. AN ABSTRACT OF THE THESIS OF Megan E. Guerre for the degree of Honors Baccalaureate of Science in Biology presented on May 22, 2014. Title: Isotopic Analysis of Diet Specificity in the Chisel-toothed Kangaroo Rat, Dipodomys microps Abstract approved: _________________________________________________ Rebecca C. Terry Rapid changes in global climate have put many species at risk, particularly niche specialists. The Chisel-toothed kangaroo rat, Dipodomys microps, is thought to specialize on the desert shrub Atriplex confertifolia. Because of this close relationship, D. microps was presumed to have tracked the shrub as its distribution shifted south during the last glacial maximum. However, recent phylogeographic evidence shows that D. microps’ distribution did not shift, despite the environmental changes during the last glacial maximum, posing an interesting question: How did D. microps persist in place when the plant on which it specializes did not inhabit the area? Concentrations of stable isotopes found within D. microps bone collagen were used to explore diet variability in the species over the past 8,000 years. Average δ13 C values through time indicated that D. microps is capable of consuming plants other than A. confertifolia and a comparison of δ15 N values to sympatric species showed that D. microps could also be consuming animal protein. Analysis of body size indicated that populations of D. microps did not experience a shift in average body size through time, but instead responded to changing abiotic conditions by shifting its dietary niche, as indicated by fluctuating values of δ13 C and δ15 N through time. Understanding which species are capable of behavioral and/or physiological responses to changing climate will allow us to better predict the impacts of ongoing and future climate change. Key words: Stable Isotopes, Dipodomys microps, Atriplex confertifolia, Climate Change, Niche (Ecology) Corresponding email address: mgnguerre@gmail.com
  • 2. Isotopic Analysis of Diet Specificity in the Chisel-toothed Kangaroo Rat, Dipodomys microps By Megan E. Guerre A PROJECT submitted to Oregon State University University Honors College in partial fulfillment of the requirements for the degree of Honors Baccalaureate of Science in Biology (Honors Associate) Presented May 22, 2014 Commencement June 2014
  • 3. ©Copyright by Megan Guerre May 22, 2014 All Rights Reserved
  • 4. Honors Baccalaureate of Science in Biology project by Megan E. Guerre presented on May 22, 2014. APPROVED: Mentor, representing Integrative Biology, Oregon State University Committee member, representing Fisheries and Wildlife, Oregon State University Committee member, representing Life Sciences, University of Nevada, Las Vegas Dean, University Honors College I understand that my project will become part of the permanent collection of Oregon State University, University Honors College. My signature below authorizes release of my project to any reader upon request. Megan E. Guerre, Author
  • 5. ACKNOWLEDGMENTS I would first like to thank my mentor, Rebecca Terry for all of her help during this process. She has patiently explained so many things and provided incredible feedback at every stage. I’ve learned so much from her and am so grateful to her for sharing her knowledge with me. Thank you for everything, Becca! I would also like to thank the University Honors College for providing funding for my research as well as guiding me through the process of completing my thesis. Finally, I would like to thank my friends and family for all of the encouragement, help, and support they’ve given me throughout my life and during the duration of this project. I couldn’t have accomplished any of this without them.
  • 6. TABLE OF CONTENTS INTRODUCTION………………………………………………………………………..... 1 1.1 Species Response to Climate Change………………………………………….1 1.2 Dipodomys microps………………………………………………………….... 1 1.3 Atriplex confertifolia…………………………………………………………...3 1.4 Dipodomys microps Feeding Behaviors………………………………………. 4 1.5 Dipodomys microps at the Last Glacial Maximum (LGM)……………………5 1.6 Isotopic Analyses of δ13 C and δ15 N…………………………………………… 6 1.7 Physiological Responses……………………………………………………….9 1.8 Predictions…………………………………………………………………….. 9 METHODS………………………………………………………………………………… 11 2.1 Sample Collection and Preparation…………………………………………….11 2.2 Collagen Extraction…………………………………………………………….12 2.3 Analysis of Stable Isotopes and Body Size…………………………………….13 RESULTS………………………………………………………………………………….. 15 3.1 δ13 C Analysis………………………………………………………………….. 15 3.2 Cross-correlation Analysis of δ13 C and δ18 O………………………………….. 19 3.3 δ15 N Analysis………………………………………………………………….. 20 3.4 Comparisons Among Sympatric Species………………………………………22 3.5 Cross-correlation Analysis of δ15 N and δ18 O…………………………………..24 3.6 Variance in δ13 C and δ15 N values……………………………………………... 25 3.7 Diastema Length Analysis……………………………………………………..26 3.8 Cross-correlation Analysis of Diastema Length and δ18 O……………………..31 DISCUSSION………………………………………………………………………………32 4.1 Introduction…………………………………………………………………….32 4.2 δ13 C……………………………………………………………………………. 32 4.3 δ15 N……………………………………………………………………………. 34 4.4 Variance in δ13 C and δ15 N……………………………………………………...36 4.5 Diastema Length……………………………………………………………….36 4.6 Conclusions…………………………………………………………………….37 LITERATURE CITED……………………………………………………………………..39
  • 7. LIST OF FIGURES AND TABLES Figures 1. Chisel-toothed kangaroo rat, Dipodomys microps….…………………………………... 2 2. Great Basin Map…..…………………………………………………………………….. 3 3. Dipodomys microps feeding on A. confertifolia………………………………………… 4 4. Comparison of D. microps’ and D. merriami’s incisors……………………..…………..5 5. CO2 fixation in the C3 photosynthetic pathway…………………………………………. 8 6. CO2 fixation in the C4 photosynthetic pathway…………………………………………. 8 7. Mandible measurements………………………………………………………………… 12 8. Boxplot of binned δ13 C values….……………………………………………………….. 15 9. Times series of δ13 C values………………………………………………………………16 10. Time series of δ18 O values….………………………………………………………….. 19 11. Cross-correlation analysis of δ18 O and δ13 C time series……………………………….. 20 12. Boxplot of binned δ15 N values………………………………………………………….21 13. Time series of δ15 N values……………………………………………………………... 22 14. Average δ15 N and δ13 C values of D. microps and sympatric species………………….. 23 15. Cross-correlation analysis of δ18 O and δ15 N time series………………………………..24 16. Variance in δ13 C and δ15 N data……………………………………………………….... 25 17. Boxplot of binned diastema length values……………………………………………...26 18. Time series of diastema length values…………………………………………………. 28 19. Variance in diastema length data………………………………………………………. 28 20. Cross-correlation analysis of diastema length and δ18 O time series…………………....31 Tables 1. Average δ13 C and δ15 N values (‰) and standard deviations……………………………. 17 2. ANOVA table for δ13 C data……………………………………………………………...17
  • 8. 3. All δ13 C and δ15 N values (‰)…………………………………….……………………....18 4. ANOVA table for δ15 N data….…………………………………………………………. 21 5. Average δ15 N and δ13 C values and standard deviations of D. microps and sympatric species………….…………………………………………………………......23 6. ANOVA table for diastema length data………………………………………………….27 7. Average diastema length values (mm) and standard deviations…………………………27 8. All diastema length (mm) values………………………………………………………... 29
  • 9. ABBREVIATIONS Before Present (BP) Interquartile Range (IQR) Last Glacial Maximum (LGM)
  • 10. Isotopic Analysis of Diet Specificity in the Chisel-toothed Kangaroo Rat, Dipodomys microps INTRODUCTION 1.1 Species Response to Climate Change Recent, rapid shifts in global climate have caused changes in many habitats, placing species and ecosystems at risk. Increasing temperatures have changed the distribution of plant communities, causing some consumer species to shift their distributions in turn in order to track the resources they need to survive (Grayson 2011). Others have developed strategies that allow them to persist in place during times of climatic change. One of these mechanisms involves a shift in a species’ average body size. During the cool, wet climate of the last glacial maximum, warm-blooded mammals would have likely exhibited larger body sizes than those of their relatives living in warmer, drier climates, according to Bergmann’s rule (Meiri and Dayan 2003). Another strategy may involve a species shifting its fundamental or realized niche in order to take advantage of the resources that are still available or resources that are newly available in the original location (Jezkova, Olah-Hemmings, Riddle 2011). Here I will examine the concept of niche shifting in a single species of small mammal, Dipodomys microps, in the Great Basin of Western North America. Specifically, in order to evaluate its ability to adapt to a changing environment, I use stable isotope analysis and morphological size measurements to address diet flexibility and physiological response to climate change that has unfolded over the last 8,000 years in the Smoke Creek desert of northwestern Nevada. 1.2 Dipodomys microps Dipodomys microps (Fig. 1) is a medium-sized, small-eared kangaroo rat with a narrow face, prominent face-mask, dark tail stripes, and a metallic gray pelage (Hayssen 1991). Like other kangaroo rats of its genus, D. microps possesses short front feet and legs, large rear ones,
  • 11. 2 and a long tail that assists with balance and leaping (Grayson 2011). Other shared characteristics include large auditory apparatuses used to detect nearly imperceptible sounds made by desert predators and the abilities to concentrate urine, a water conservation technique, and extract water from their food (Grayson 2011). The aforementioned adaptations make it possible for these rodents to inhabit the arid deserts of the Great Basin (Fig. 2), a vast region of internal drainage, which is bordered to the west by the Sierra Nevada Mountains, to the east by the Wasatch Mountains and to the south by the Colorado River (Hayssen 1991). One way in which D. microps is distinguishable from other members of the Dipodomys genus is its diet preference. While most Great Basin kangaroo rats are classified as granivorous, or feeding primarily on seeds, D. microps is folivorous, with a diet thought to consist almost entirely of leaves from the desert shrub Atriplex confertifolia, commonly known as shadscale or spiny saltbush (Kenagy 1973). Fig. 1 The Chisel-toothed kangaroo rat, Dipodomys microps. (American Society of Mammalogists 2014).
  • 12. 3 Fig. 2 The deserts of the Western United States. Study site (in the Smoke Creek Desert) indicated by the star. (Rand McNally 2010) 1.3 Atriplex confertifolia Shadscale Saltbush (A. confertifolia) is a drought tolerant, low-growing shrub, distributed throughout Western North America with the largest concentrations found in the Great Basin and Colorado Plateau (USDA 2014). Characterized by spine-tipped branches and gray-green leaves, A. confertifolia is classified as a facultative halophyte and can tolerate soils of high salinity and low moisture (Grayson 2011, USDA 2014). Many Atriplex species possess the ability to concentrate salt in the outermost leaf tissue layers, specifically the vesicular trichome and the epidermis (Kenagy 1973). This adaptation contributes to leaf color which allows leaves to reflect
  • 13. 4 sunlight, keeps the plant cooler due to the lighter color of its leaves, and provides a defense from herbivores, which may find the high salinity of the leaves to be unpalatable (Grayson 2011). 1.4 Dipodomys microps Feeding Behaviors Despite the deterrent of leaves with hypersaline tissues, Kenagy reportedly observed D. microps exhibiting selective harvesting with most individuals choosing to collect leaves from A. confertifolia shrubs (1973, Fig. 3). Kenagy postulated that D. microps’ namesake, anteriorly flattened chisel-shaped incisors (Fig. 4), provide it with the ability to scrape off the hypersaline outer layer of A. confertifolia leaves in order to reach the comparably more succulent layers beneath (1973). Fig. 3 Dipodomys microps feeding on A. confertifolia shrub (Kenagy 1973). 392 G. J. Kenagy: Fig. 4. Dipodomys microps in the top of a spiny saltbush shrub, Atriplex confertifolia Although D. microps near Big Pine uses leaves of A. confertifolia to the nearly total exclusion of other plant species (see list under "Ve- getation at the Study Site"), the other leaves taken were all chenopods: A. canescens, A. polycarpa, Sarcobatus, and Eurotia lanata. Of 14 records of the food plants of D. microps in Nevada (summarized by Hall, 1946), 10 are for fresh leaves and four are for seeds. Six of the 10 records of leaves are for chenopods, four of which are Atriplex spp. However, D. microps is not the only species of kangaroo rat known to utilize chenopod leaves. Tappe (1941) recorded leaves and stems of Atriplex sp. in six of 17 excavated burrows of D. heermanni, and Culbertson (1946) recorded "very small quantities of alkali blite" (Suaeda sp.) in burrows of D. nitratoides. Hall (1946) reports leaves of Atriplex sp. in cheek pouches of D. dese?i, and Bradley and Mauer (1971) recorded leaves of A. canescens in cheek pouches of D. merriami. However, there is no evidence that any other species of Dipodomys relies as heavily as D. microps on these leaves.
  • 14. 5 Fig. 4 Anteriorly flattened chisel-shaped incisors of D. microps (left) and the rounded, narrower incisors of relative D. merriami (right) (Kenagy 1973). Selective pressure likely favored the broad and flat lower incisor because through its use, D. microps is able to consume all of the water it requires from specific tissues in these leaves (Kenagy 1973). This unique diet provides for niche segregation between D. microps and other species in the Dipodomys genus and makes it possible for these species to occur sympatrically, inhabiting the same regions and even the same microhabitats on a local scale (Baumgardener and Kennedy 1994). In times of climatic change, habitats with climate conditions suitable for D. microps shift in latitude. The commonly held assumption is that the fauna of a given habitat are likely to track that habitat as the climate changes in order to continue to live within areas exhibiting the climate conditions they require, (otherwise known as a species’ “climate envelope.”) 1.5 Dipodomys microps at the Last Glacial Maximum (LGM) During the last glacial maximum (LGM), approximately 21,000 years before present, the Great Basin was characterized by increased precipitation and cooler temperatures (Grayson 2011), resulting in elevational and latitudinal shifts, as well as compositional turn-over in Great Basin plant assemblages (Jezkova, Olah-Hemmings, Riddle 2011). Because of its close association with shadscale, D. microps has been classified as a diet and niche specialist and was assumed to experience range shifts mirroring those of A. confertifolia during this period of extensive climate change (Jezkova, Olah-Hemmings, Riddle 2011). Specifically, D. microps 394 G. J. Kenagy: ^Wk -km*-. Fig. 5. Lower incisors of D. microps (left) and D. merriami (right). The broad, anteriorly flattened, chisel-shaped lower incisors of D. microps are uniquely spe- cialized for shaving off the surface tissues of leaves. The narrower, anteriorly rounded, awl-shaped lower incisors of D. merriami are typical of the genus stripped and the dark green tissue is exposed. The debris falls from the lower surface of the leaf during this stripping process. Pieces of debris were usually no greater than 2-3 mm in diamter, but one captive in- dividual occasionally removed the surface tissue of a whole side of a leaf in a single intact piece. The leaf is turned over and the process repeated on the other side. After the outer tissue is shaved off the second side, the inner part of the leaf is eaten. It takes about 15-20 sec for D. microps to strip and eat a leaf. The lower incisors of D. microps are uniquely adapted for shaving off the surface tissue of leaves. They are broad and chisel-shaped, unlike the incisors of other kangaroo rats (Fig. 5). Hall and Dale (1939) first pointed out that D. microps can be identified by these unique incisors, but Merriam (1904) did not even mention the lower incisors in the origi- nal description of the species. Due to the general relationship of the incisors, diastema, and cheek teeth in rodents, the leaf-shaving process employed by D. microps occurs outside of the mouth. The mouth cavity is closed off by the upper lip, which covers the diastemal palate behind the upper incisors, as described by other investigators (for example Quay, 1954). of Use of Leaves as a Water Source D. microps kept at 26? C and provided with 100 g twigs and leaves A. confertifolia every other day, in addition to ad lib. seeds, main- tained or gained body weight for 20 days, until fresh leaves were no longer provided (Fig. 3b). Under the same conditions, except without leaves, D. microps lost weight rapidly, as mentioned already ?Fig. 3a). By the day following the first feeding of leaves and twigs, almost all leaves were stripped from the twigs. Leaf shavings began to accumulate, and unchewed leaves were piled together and buried. I removed bare This content downloaded from 128.193.164.203 on Tue, 2 Jul 2013 00:20:23 AM All use subject to JSTOR Terms and Conditions
  • 15. 6 should have tracked Atriplex towards lower latitudes as the shrub tracked the warm, dry climate it requires to grow. (Reconstructions based on packrat midden and pollen records of the environment at the LGM indicate that low-elevation Atriplex habitat was covered in assemblages of plants that today would be found at higher elevations, Spaulding 1990). However, recent phylogeographic analyses show that D. microps does not exhibit a genetic signal indicative of a species that had recently expanded its range out from a refugium, as would be the case if the kangaroo rat had become restricted in the LGM to southern refugia in the Mojave desert and then moved northwards with climate warming toward the end of the ice age (Jezkova, Olah- Hemmings, Riddle 2011). In contrast, the genetic evidence supports the hypothesis that D. microps remained in place during the last glacial maximum even though the plant on which it specializes did not inhabit the area (Spaulding 1990), posing an interesting question regarding diet flexibility and response to climate change. 1.6 Isotopic Analyses of δ13 C and δ15 N Isotopic analysis of D. microps bone collagen allows for an exploration of diet variability based on differential incorporation of certain concentrations of δ13 C and δ15 N isotopes obtained from an animal’s food (Coltrain and Janetski 2013). δ13 C analysis provides us with information about the types of plants that contribute to D. microps’ diet throughout its lifetime. Plants employing the Calvin cycle photosynthetic pathway (Fig. 5), also know as C3 plants, discriminate against CO2 molecules containing the heavier carbon isotope in a number of ways. Atmospheric 13 CO2 molecules diffuse more slowly through the air within stomatal pores, resulting in a fractionation of approximately 4.4‰ between the air and plant tissue (Marshal, Brooks, and Lajtha 2007). Additionally, atmospheric 13 CO2 is discriminated against by the photosynthetic enzyme ribulose bisphosphate carboxylase, also known as rubisco, causing a further fractionation of about 29‰ (Marshal, Brooks, and Lajtha 2007). C3 plants thus exhibit δ13 C values between
  • 16. 7 -12.4‰ and -37‰ with a median of -27‰ (Marshal, Brooks, and Lajtha 2007). Most plants in Great Basin deserts follow the C3 photosynthetic pathway and possess δ13 C values within this previously stated range. Enrichment of δ13 C values upon incorporation into bone collagen is minor – approximately 1‰ per trophic level (0.4‰ –Post 2002, 1‰-2‰ –Sweeting et al. 2007, and 0.8‰ –Vander Zanden and Rasmussen 2001). The 13 C signature of A. confertifolia is distinct because it uses the C4 photosynthetic pathway (Fig. 6), named for the four-carbon molecule to which CO2 is initially fixed. This fixation is completed by the C4 photosynthetic enzyme phosphoenolpyruvate (PEP) carboxylase, which has a higher affinity for atmospheric 13 CO2 than does rubisco (Marshal, Brooks, and Lajtha 2007). Sugars containing 13 CO2 diffuse from mesophyll cells (the site of initial fixation) to bundle sheath cells where 13 CO2 is released and concentrated around rubisco, reducing discrimination against and fractionation of atmospheric 13 CO2 (Marshal, Brooks, and Lajtha 2007). Diffusion of some 13 CO2 out of the bundle sheath cells during this process results in more negative δ13 C values in some C4 plants. Environmental stressors such as soil salinity and habitat elevation can affect the permeability of bundle sheath cell membranes, influencing this process (Sandquist and Ehleringer 1995). C4 plants exhibit a range of δ13 C values of approximately -10‰ to -18‰, with a median of approximately -14‰ (O’Leary 1988). The δ13 C signal recorded in the bones of D. microps reflects the dominant plants (C3 or C4) consumed over the lifetime of the individual and a comparison of many individuals through time can thus be used to show possible variation in diet within a population over multiple generations. We hypothesized that in order for D. microps to persist in place during the last glacial maximum, the species is able to exhibit diet flexibility and consume plants other than A. confertifolia. Analysis of δ15 N values can provide insight into climate conditions and the amount of animal protein (e.g. insects) that might be consumed by an animal. Plant δ15 N ratios tend to
  • 17. 8 Fig. 5 Steps in CO2 fixation in the C3 photosynthetic pathway. Size of font represents relative CO2 concentration at each stage (O’Leary 1988). Fig. 6 Steps in CO2 fixation in the C4 photosynthetic pathway. Size of font represents relative CO2 concentration at each stage (O’Leary 1988).
  • 18. 9 increase both with decreasing precipitation and increasing temperature and aridity (Koch 2007). The δ15 N signal recorded in the bones of D. microps might thus be expected to rise as the climate became warmer and more arid after the last glacial maximum. An additional increase in δ15 N values (approximately 3.4‰ per trophic level) could result from the consumption of animal protein (Post 2002, Vander Zanden and Rasmussen 2001). 1.7 Physiological Responses In addition to changes in diet associated with climate change, animals can also respond to changing climates physiologically. One of these responses, described by Bergmann’s rule, corresponds to a change in average body size of individuals within a population due to the physics of surface area to body volume and thus the ability of an animal to dissipate heat (Meiri and Dayan 2003). As climate warms and dries, average body size across populations tends to decrease, thus increasing the surface area to volume ratio and increasing the efficiency of heat loss. Conversely, cool, wet climates correspond to increases in body size across populations due to an increase in the surface area to volume ratio and thus increase in heat retention capabilities. 1.8 Predictions To evaluate the behavioral and physiological response of D. microps to changes in climate, we analyzed variation in body size as well as δ13 C values and δ15 N values, within and between separate time periods spanning the early Holocene to recent (approximately the past 9,000 years). With a local trend of warming and drying, we expect D. microps mandibles to decrease in size (affirming Bergmann’s rule), and δ15 N values to increase, reflecting increased aridity in the environment. Given the genetic signature of geographic stability in D. microps through time despite the absence of the C4 shrub Atriplex confertifolia in the northern Great Basin
  • 19. 10 (Jezkova, Olah-Hemmings, Riddle 2011), we expect to see δ13 C values that are not exclusively in the C4 range, indicating that D. microps is less of a dietary specialist than has previously been considered.
  • 20. 11 METHODS 2.1 Sample Collection and Preparation Fossil and modern-day samples of D. microps mandibles were collected at a long-term owl roost located in the Smoke Creek Desert of northwestern Nevada (Fig. 2). The existence of these samples indicates that D. microps was present for the last 8,000 years at this site. Fossil specimens were extracted from the research site in 1993 by B. Hocket (Nevada BLM) and identified and catalogued by R. Terry (OSU) in 2008-10. Modern samples were collected from owl pellets gathered at the research site in the years 2007 and 2013. Data from the youngest fossil samples (aged 25 years), which had previously been analyzed for δ13 C and δ15 N concentrations, were included in the study and were considered additional modern samples (Terry unpublished data). Mandibles were sorted into groups of five or six specimens per stratum, with the assumption that bones found in the same stratum were of similar age. Strata were combined if they contained an insufficient number of bones to be analyzed separately and stratum age estimates adjusted accordingly. Ages were assigned to fossil specimen groups using radiocarbon dating and a spline-fit age model, and ages of groups containing multiple strata were calculated by averaging ages of the separate strata (Terry et al. 2011). Samples collected in 2007 and 2013 were assigned ages of seven and one respectively. All ages are expressed as years before present (BP), with the present defined as 2014 AD. Prior to destructive analysis for stable isotopes, standard morphological measurements for each mandible were recorded, including diastema, alveolar, and total length, mandibular depth, P4 socket length and width, and premolar length and width (Fig. 7). Photographs of each mandible were taken.
  • 21. 12 Fig. 7 Mandible measurements. DL: diastema length, MD: mandibular depth, AL: alveolar length, P/MW: pre-molar width, and P/ML: pre-molar length (Terry 2008). 2.2 Collagen Extraction Collagen was extracted from each sample in preparation for analysis of δ13 C and δ15 N concentrations. Following tooth removal, approximately half of each mandible was separated and then its mass was recorded. This portion of the original mandible was then placed in a borosilicate vial with enough Milli-Q water to completely cover the bone. Samples were sonicated to remove hair and dirt particles. After five minutes of sonication, Milli-Q water was replaced and samples were returned to the sonicator for ten minutes. If dirt or hair remained, Milli-Q water was again replaced and the bone returned to the sonicator for an additional ten minutes. Three mL of 0.1 M HCl were added to each vial to decalcify the bones and the vials placed in a refrigerator for 7.5 to 45 hours until completely decalcified. For some samples, acid was drained and replaced one or multiple times before decalcification was complete. Decalcification was assessed visually and manually using forceps. Collagen samples were
  • 22. 13 removed from the acid treatment and rinsed with Milli-Q water five times. They were next frozen and then placed in a Labconco Bench-top 1L freeze drier for about 24 hours. Subsequently, the collagen residue was massed and approximately 0.5-0.7 mg of material separated and placed into tin boats. Left over collagen was retained and stored in a desiccator cabinet. 2.3 Analysis of Stable Isotopes and Body Size Analysis of δ13 C and δ15 N isotopes took place in the Stable Isotope Laboratory at the University of California, Santa Cruz. CO2 released upon combustion of the collagen samples was analyzed in a mass spectrometer for δ13 C and δ15 N concentrations (‰). These values were then weight corrected. A total of fifty-four bones were prepared and their stable isotopes analyzed. Isotope values of two bones with abnormally high C:N ratios (one each from the 18th and 20th strata) were removed before analysis. This high C:N ratio, a value of approximately 3.5 or higher, indicates the bone collagen had been diagenetically altered, either by deterioration of its original chemical composition or through microbiological activities, and thus the isotope concentrations were unreliable. δ13 C values for groups aged one, seven, and twenty-five years were corrected for the Seuss effect. This concept describes the increase in fossil fuel-derived CO2 emissions since the early 18th century caused almost entirely by anthropogenic activities (Rubino et al. 2013). Fossil fuel-derived CO2 is depleted in 13 C (since these fuels were formed from plants that existed before C4 photosynthesis evolved), which has resulted in a global decrease of approximately 1‰- 2‰ in modern samples. A correction of 2‰ was added to values in the one-year age group, 1.75‰ to values in the seven-year age group, and 1.3‰ to values in the twenty-five-year age group based on data from Rubino et al. (2013). Mean δ13 C and δ15 N values and their standard deviations were calculated for each stratum. Average δ13 C and δ15 N values for samples aged 25 years were compared to those of other small mammal species living at the study site (from the same time period). Of the size data
  • 23. 14 collected, diastema length data were most complete (other measurements were less reliable due to bone breakage) and mean values were used to analyze change in D. microps body size through time. Strata were analyzed individually as a time series and also then binned into broader age groups based on a nearby local δ18 O paleoclimate record from a lake sediment core in order to look at overall trends among periods of similar climate conditions (δ18 O values tend to increase with increasing temperatures and aridity in the environment, Benson et al. 2002). Bins were given the titles Modern, Pre-modern – 3000 years ago, 3500 – 6000 years ago, and >6000 years ago. An outlier with an abnormally high δ15 N value was removed. Binned data were analyzed using a one- way ANOVA with Tukey’s post-hoc pairwise comparisons. Statistical analyses were conducted in Minitab 16. Isotopic and body size time series were compared using cross-correlations to δ18 O paleoclimate data from the literature.
  • 24. 15 RESULTS 3.1 δ13 C Analysis Mean values for binned δ13 C data ranged from -18.21‰ to -16.82‰ (Table 1) with the majority of samples falling between approximately -19‰ and -15‰ (Fig. 8). There was no significant difference between average δ13 C values of binned age groups [F(3, 52) = 1.02, p = 0.394] (Table 2), and overlap existed between interquartile ranges (IQR) of all age bins. The trend, moving from older to younger samples, was toward more negative δ13 C values, despite corrections for the Seuss effect. Although the Modern bin IQR included a range of values similar to that of other bins, the bin’s average, -18.21‰, was most different (Table 1). When the δ13 C data of bones aged 25 years was not included, the average δ13 C value of the modern bin was significantly more negative than those of the Holocene bins. Fig. 8 δ13 C values binned into broad age groups based on periods of shared climate. Classifica- tions for age bins with inclusive ages, in years, displayed in parentheses: Modern (1-30), Pre- modern-3000 (31-3000), 3500-6000, >6000. Median values indicated by the horizontal lines within the boxplots. Trendline shows the mean value of each age bin. >60003500-6000Pre-modern-3000Modern -12 -13 -14 -15 -16 -17 -18 -19 -20 -21 Age (years) δ13CValues(‰)
  • 25. 16 A time series of all δ13 C values and stratum averages showed some fluctuation within and between strata (Fig. 9). Mean values ranged from -19.53‰ to -15.44‰ with the least negative values occurring in the middle Holocene samples (approximately 5,200 years ago) and the most negative values occurring in the modern samples (Table 1). Variation within each stratum was often greater than the difference between strata. The spread of δ13 C values within time periods ranged from approximately 2‰ - 8‰ (Table 3). Fig. 9 All δ13 C values (‰) for each stratum with mean values indicated by the curve and standard deviations indicated by the vertical lines. Left inset shows expanded view of δ13 C values for bones aged 1, 7, and 25 years. Right shows values for bones aged 287.5 and 317.5 years.
  • 26. 17 Table 1 Average δ13 C and δ15 N values (‰) and standard deviations calculated for each age group. Binned groups indicated by alternated shading. Averages and standard deviations calculated for binned age groups. Ages represent years before present (2014). Table 2 One-way analysis of variance (ANOVA) of binned age group means for δ13 C data. Acronyms defined as: degrees of freedom (DF), sum of squares (SS), mean square error (MS), the F test statistic (F), and p-value (P). Source DF SS MS F P Age (years BP) 3 15.29 5.10 1.02 0.394 Error 52 261.15 5.02 Total 55 276.44 Age (years BP) Average δ13 C (‰) Binned δ13 C Average Average δ15 N (‰) Binned δ15 N Average 1 -19.53 ± 0.67 Modern -18.21 ± 2.09 11.86 ± 2.48 Modern 13.69 ± 3.00 7 -18.38 ±1.74 16.45 ± 0.63 25 -16.44 ± 2.56 12.59 ± 3.15 287.5 -17.84 ± 2.44 Pre-modern- 3000 -17.45 ± 1.70 12.61 ± 3.43 Pre-modern- 3000 12.05 ± 3.44 317.5 -16.69 ± 2.07 11.73 ± 3.52 1512.7 -17.66 ± 0.98 10.76 ± 3.36 2955.4 -17.71 ± 1.20 13.43 ± 3.94 3552.6 -18.15 ± 2.82 3500-6000 -16.92 ± 2.97 9.38 ± 1.55 3500-6000 12.01 ± 3.895232.9 -15.44 ± 2.66 15.18 ± 3.45 7170.7 -16.82 ± 2.92 >6000 -16.82 ± 2.92 14.05 ± 1.54 >6000 14.05 ± 1.54
  • 27. 18 Table 3 δ13 C and δ15 N values (‰) generated through mass spectrometry analysis of D. microps bone collagen. Divided by age group. Stratum Mandible Identifier Age (years BP) δ13 C Value (‰) δ15 N Value (‰) TLC TL 8.13 8.13.1 1 -20.62 11.62 TLC TL 8.13 8.13.2 1 -19 10.98 TLC TL 8.13 8.13.3 1 -19.27 14.65 TLC BL 8.13 8.13.4 1 -18.88 15.03 TLC BL 8.13 8.13.5 1 -19.37 9.04 TLC BL 8.13 8.13.6 1 -20.05 9.81 TLC 4.07 4335/4336 7 -15.2 17.09 TLC 4.07 4341/4342 7 -18.11 16.16 TLC 4.07 4347 7 -18.1 15.82 TLC 4.07 4339/4340 7 -19.23 16.98 TLC 4.07 4337/4338 7 -19.74 15.72 TLC 4.07 4348/4349 7 -19.9 16.95 TLCI5 Sample35 25 -16.35 7.17 TLCI7 Sample36 25 -20.5 12.49 TLCI14 Sample4 25 -13.37 14.66 TLCI16 Sample37 25 -15.98 14.35 TLCI17 Sample38 25 -16.01 14.27 TLC D4 Spit 1 2559 287.5 -18.76 16.93 TLC D4 Spit 1 2561 287.5 -18.9 13.12 TLC D4 Spit 1 2562 287.5 -20.4 9.01 TLC D4 Spit 1 2564 287.5 -13.99 14.67 TLC D4 Spit 1 2565 287.5 -17.15 9.31 TLC D4 Spit 3 2571 317.5 -19.33 10.56 TLC D4 Spit 3 2574 317.5 -16.42 10.9 TLC D4 Spit 3 2575 317.5 -15.35 14.48 TLC D4 Spit 4 2578 317.5 -14.31 17.21 TLC D4 Spit 4 2579 317.5 -19.09 7.43 TLC D4 Spit 4 2580 317.5 -15.64 9.77 TLC D4 Spit 7 2584 1512.7 -17.16 8.2 TLC D4 Spit 7 2585 1512.7 -17.23 8.16 TLC D4 Spit 7 2586 1512.7 -17.39 17.09 TLC D4 Spit 7 2587 1512.7 -17.39 10.62 TLC D4 Spit 7 2588 1512.7 -17.12 11.37 TLC D4 Spit 7 2589 1512.7 -19.64 9.12 TLC D4 Spit 11 2597 2955.4 -18.16 16.17 TLC D4 Spit 11 2598 2955.4 -16.2 8.67 TLC D4 Spit 11 2599 2955.4 -18.29 10.26 TLC D4 Spit 11 2600 2955.4 -19.14 18.06 TLC D4 Spit 11 2601 2955.4 -16.78 13.99 TLC D4 Spit 12 2602 3552.6 -21.33 10.72 TLC D4 Spit 12 2603 3552.6 -13.34 7.73 TLC D4 Spit 12 2605 3552.6 -19.26 11.35 TLC D4 Spit 13 2606 3552.6 -16.52 10.15 TLC D4 Spit 13 2607 3552.6 -19.52 8.12 TLC D4 Spit 13 2609 3552.6 -18.93 8.19
  • 28. 19 Table 3 (continued) Stratum Mandible Identifier Age (years BP) δ13 C Value (‰) δ15 N Value (‰) TLC D4 Spit 15 2610 5232.9 -14.34 14.61 TLC D4 Spit 15 2611 5232.9 -12.45 13.89 TLC D4 Spit 15 2612 5232.9 -14.69 15.04 TLC D4 Spit 16 2613 5232.9 -16.12 20.85 TLC D4 Spit 17 2614 5232.9 -19.59 11.51 TLC D4 Spit 18 2616 7170.7 -19.72 13.87 TLC D4 Spit 19 2620 7170.7 -19.1 11.69 TLC D4 Spit 19 2621 7170.7 -11.78 15.26 TLC D4 Spit 19 2622 7170.7 -16.69 15.49 TLC D4 Spit 20 2626 7170.7 -15.49 15.16 TLC D4 Spit 20 2627 7170.7 -18.14 12.84 3.2 Cross-correlation Analysis of δ13 C and δ18 O δ18 O paleoclimate data (Fig. 10) for Pyramid Lake, Nevada, obtained from the literature did not explain a significant portion of variance in the δ13 C data (p = 0.074, R2 = 0.064), although δ13 C varied inversely with δ18 O. Less negative δ13 C values corresponded to low δ18 O values and more negative δ13 C values corresponded to high δ18 O values (Fig. 11). Fig. 10 δ18 O values (‰) with a moving averages trendline (Benson et al. 2002).
  • 29. 20 Fig. 11 Cross-correlation analysis of δ18 O and δ13 C time series data. R2 = 0.064, p = 0.074. 3.3 δ15 N Analysis There was no significant difference between average δ15 N values of each binned age group [F(3, 52) = 1.31, p = 0.281] (Table 4). As with the δ13 C data, there was a fair amount of overlap between each bin’s IQR (Fig. 12). Mean binned δ15 N values fell between approximately 12‰ and 14‰, and the difference between the highest and lowest value was greater than that of the binned δ13 C data (Table 1). In contrast to the δ13 C data, binned δ15 N values showed no unidirectional trend. The oldest and youngest bins possessed the most similar and highest mean values, while the two middle bins (Pre-modern – 3000 and 3500 – 6000) also showed very similar mean values. A time series of all δ15 N values and stratum averages showed more fluctuation over the range of sample ages than did the δ13 C data (Fig. 13). Mean values fell between 9.38‰ and 16.45‰ (Table 1). Variation in δ15 N within each stratum was notable, with a range of values from
  • 30. 21 approximately 1.5‰ - 10‰ (Table 3). There was a greater difference between stratum mean values than was exhibited by the δ13 C data. Fig. 12 δ15 N values binned into broad time groups based on periods of shared climate. For classification of age bins see Fig. 8. Median values are indicated by the horizontal lines within the boxplots and a trendline shows the mean value of each binned age group. Table 4 One-way analysis of variance (ANOVA) of binned age group means for δ15 N data. For definitions of acronyms, see Table 2. Source DF SS MS F P Age (years BP) 3 42.0 14.0 1.31 0.281 Error 52 556.9 10.7 Total 55 598.9
  • 31. 22 Fig. 13 All δ15 N values (‰) for each stratum with average values indicated by the trendline and standard deviations indicated by the vertical lines. Left inset shows expanded view δ15 N values for bones aged 1, 7, and 25 years. Right shows values for bones aged 287.5 and 317.5 years. 3.4 Comparisons Among Sympatric Species Of the sympatric species that occur with D. microps at Two Ledges Chamber, O. torridus’ average δ15 N value of 13.07‰ was the only one that exceeded that of D. microps, (12.59‰ – Table 5). All other small mammal species exhibited values between 6.9‰ and 11.89‰ (Table 5). The majority of these specimens exhibited average δ13 C values more negative than D. microps (Fig. 14). P maniculatus was the only species to exhibit a δ13 C value less negative than that of D. microps, -15.46‰ and -16.44‰ respectively (Table 5).
  • 32. 23 Fig. 14 Average δ15 N and δ13 C values of D. microps and other sympatric small mammal species. Samples aged 25 years (Terry, unpublished data). Table 5 Average δ15 N and δ13 C values and standard deviations of D. microps and other sympatric small mammal species. Samples aged 25 years (Terry, unpublished data). Species Average δ13 C (‰) Average δ15 N (‰) Chaetodipus formosus -20.06 ± 0.54 6.90 ± 0.34 Dipodomys microps -16.44 ± 2.56 12.59 ± 3.15 Neotoma lepida -20.99 ± 0.87 8.87 ± 1.50 Onychomys torridus -17.92 ± 0.55 13.07 ± 3.19 Perognathus longimembris -18.82 ± 1.98 11.89 ± 1.81 Peromyscus maniculatus -15.46 ± 4.53 10.36 ± 0.96 Reithrodontomys megalotis -19.46 ± 1.53 8.09 ± 2.87
  • 33. 24 3.5 Cross-correlation Analysis of δ15 N and δ18 O Variance in the δ15 N data was not explained by change in δ18 O paleoclimate data (p = 0.739, R2 = 0.002) and there was little to no relationship between time series of the two isotopes (Fig. 15). Fig. 15 Cross-correlation analysis of δ18 O and δ15 N time series. R2 = 0.002, p = 0.739.
  • 34. 25 3.6 Variance in δ13 C and δ15 N values For both the δ13 C and δ15 N data, fluctuation in variance within each age group was evident (Fig. 16). The highest δ13 C variance occurred in the oldest samples (aged approximately 3,500 – 8,000 years) and remained fairly constant until approximately 3,500 years BP, at which point it dropped markedly until rising again approximately 1,000 years BP and dropping into the modern (Fig. 16). δ15 N variance appears to have experienced more change than that of δ13 C, with peaks approximately 5,200 and 3,000 years before present and lows at approximately 3,500 and 1,500 years BP. For both data series, the lowest variance values occurred in the youngest samples (aged 1-7 years). Positive and negative trends in the δ13 C and δ15 N data varied inversely until approximately 1,500 years BP, when a more parallel relationship appeared (Fig 16). Fig. 16 Variance in δ13 C (solid line) and δ15 N (dashed line) data.
  • 35. 26 3.7 Diastema Length Analysis Little variation was apparent among diastema length values separated into binned age groups. No significant difference was found between the mean values of these bins [F(3, 40) = 0.07, p = 0.973] (Table 6), which ranged from 5.44 mm to 5.50 mm (Table 7). Bin interquartile ranges fell between approximately 5.15 mm and 5.80 mm with the three smaller ranges falling within the largest (Fig 17). Average values were fairly constant through time. A time series of all diastema length values and average stratum values showed slightly more fluctuation (Fig. 18). Average values ranged from 5.17 mm to 5.73 mm (Table 7) and variation within strata fell between approximately 0.100 mm and 1.400 mm (Table 8). Calculated variance values ranged from 0.006 mm to 0.241 mm (Fig. 19). Fig. 17 Diastema length (mm) of D. microps mandibles binned into broad age groups based on climate trends. For classification of age bins, see Fig 8. Data were not available for bones aged 25 years and were not included in the analysis. Median values are marked on the chart with a horizontal line and a trendline shows the mean value for each age bin.
  • 36. 27 Table 6 One-way analysis of variance (ANOVA) of binned age group means for diastema length data. For definitions of acronyms, see Table 2. Source DF SS MS F P Age (years BP) 3 0.025 0.008 0.07 0.973 Error 40 4.556 0.114 Total 43 4.582 Table 7 Average diastema length values (mm) and standard deviations calculated for each stratum. Binned groups indicated by alternated shading. Averages and standard deviations calculated for binned age groups. Ages represent years before present (2014). Age (years BP) Average Diastema Length (mm) Binned Diastema Length Average (mm) 1 5.57 ± 0.225 Modern 5.46 ± 0.3827 5.35 ± 0.491 287.5 5.45 ± 0.245 Pre-modern – 3000 5.44 ± 0.300 317.5 5.56 ± 0.323 1512.7 5.48 ± 0.214 2955.4 5.17 ± 0.353 3552.6 5.42 ± 0.420 3500 – 6000 5.50 ± 0.3765232.9 5.73 ± 0.078 7170.7 5.48 ± 0.413 >6000 5.48 ± 0.340
  • 37. 28 Fig. 18 Time series of all diastema length (mm) values for each stratum with average values indicated by the trendline and standard deviations indicated by the vertical lines. Left inset shows expanded view of lengths for bones aged 1 and 7 years. Right shows lengths of bones aged 287.5 and 317.5 years. Fig. 19 Variance in diastema length data (mm).
  • 38. 29 Table 8 All diastema length values (mm). Diastema length data unavailable for bones aged 25 years. Other specimens excluded due to bone breakage. Stratum Mandible Identifier Age (years BP) Diastema Length (mm) TLC TL 8.13 8.13.1 1 5.88 TLC TL 8.13 8.13.2 1 5.22 TLC TL 8.13 8.13.3 1 5.48 TLC BL 8.13 8.13.4 1 5.73 TLC BL 8.13 8.13.5 1 5.53 TLC BL 8.13 8.13.6 1 5.58 TLC 4.07 4335/4336 7 6.04 TLC 4.07 4341/4342 7 4.61 TLC 4.07 4347 7 5.26 TLC 4.07 4339/4340 7 5.35 TLC 4.07 4337/4338 7 5.71 TLC 4.07 4348/4349 7 5.14 TLCI5 Sample35 25 5.58 TLCI7 Sample36 25 5.45 TLCI14 Sample4 25 5.26 TLCI16 Sample37 25 5.78 TLCI17 Sample38 25 5.17 TLC D4 Spit 1 2559 287.5 5.64 TLC D4 Spit 1 2561 287.5 4.98 TLC D4 Spit 1 2562 287.5 5.88 TLC D4 Spit 1 2564 287.5 5.55 TLC D4 Spit 1 2565 287.5 5.83 TLC D4 Spit 3 2571 317.5 5.5 TLC D4 Spit 3 2574 317.5 5.36 TLC D4 Spit 3 2575 317.5 5.47 TLC D4 Spit 4 2578 317.5 5.88 TLC D4 Spit 4 2579 317.5 5.25 TLC D4 Spit 4 2580 317.5 5.48 TLC D4 Spit 7 2584 1512.7 5.44 TLC D4 Spit 7 2585 1512.7 - TLC D4 Spit 7 2586 1512.7 5.36 TLC D4 Spit 7 2587 1512.7 4.74 TLC D4 Spit 7 2588 1512.7 5.04 TLC D4 Spit 7 2589 1512.7 5.54 TLC D4 Spit 11 2597 2955.4 5.6 TLC D4 Spit 11 2598 2955.4 5.72 TLC D4 Spit 11 2599 2955.4 - TLC D4 Spit 11 2600 2955.4 5.28 TLC D4 Spit 11 2601 2955.4 5.74
  • 39. 30 Table 8 (continued) Stratum Mandible Identifier Age (years BP) Diastema Length (mm) TLC D4 Spit 12 2602 3552.6 4.74 TLC D4 Spit 12 2603 3552.6 5.88 TLC D4 Spit 12 2605 3552.6 5.22 TLC D4 Spit 13 2606 3552.6 5.48 TLC D4 Spit 13 2607 3552.6 5.73 TLC D4 Spit 13 2609 3552.6 5.53 TLC D4 Spit 15 2610 5232.9 5.78 TLC D4 Spit 15 2611 5232.9 - TLC D4 Spit 15 2612 5232.9 - TLC D4 Spit 16 2613 5232.9 5.67 TLC D4 Spit 17 2614 5232.9 - TLC D4 Spit 18 2616 7170.7 - TLC D4 Spit 19 2620 7170.7 5.06 TLC D4 Spit 19 2621 7170.7 5.55 TLC D4 Spit 19 2622 7170.7 5.88 TLC D4 Spit 20 2626 7170.7 - TLC D4 Spit 20 2627 7170.7 5.41
  • 40. 31 3.8 Cross-correlation Analysis of Diastema Length and δ18 O The variance in diastema length was not explained by the δ18 O paleoclimate data (p = 0.826, R2 = 0.001). There was little to no relationship visible between the two variables (Fig. 20). Fig. 20 Cross-correlation analysis of diastema length (mm) and δ18 O time series. R2 = 0.001, p = 0.826.
  • 41. 32 DISCUSSION 4.1 Introduction Recent changes in global climate have put many species at risk, particularly those classified as niche specialists, who rely on very specific aspects of their habitats to survive. As a diet specialist, D. microps would be expected to be tied to locations where the plant on which it specializes, A. confertifolia, is able to grow. As A. confertifolia’s distribution throughout the deserts of the Great Basin shifted (Spaulding 1990), D. microps would be expected to track it. However, variation (genotypic and/or ecophenotypic) can allow species to potentially persist in place and respond to a strong directional selective pressure. Analysis of variation in body size, δ13 C values and δ15 N values within and between time periods (spanning the past 8,000 years) allowed us to assess the ability of D. microps to adapt behaviorally and physiologically in order to persist in place throughout climatic changes in the Great Basin. 4.2 δ13 C Average δ13 C values derived from isotopic analysis of D. microps bone collagen showed variation within and between strata. These values provide insight into the type of plants that make up the bulk of D. microps’ diet, previously thought to consist almost entirely of leaves from the desert shrub, Atriplex confertifolia. These leaves exhibit a δ13 C value of approximately -16‰ to -15‰ (Pedicino et al. 2002) with fractionation upon consumption of about 1‰. Bone collagen of a D. microps specimen feeding only on A. confertifolia would have an expected δ13 C value of about -14‰ to -15‰. At an average of -15.44‰ ± 2.66‰, samples in the 5232.9-year age group exhibited δ13 C values closest to this range. It is likely that at this point in D. microps’ natural history, shadscale leaves represented a larger portion of total diet than they do in modern samples. During the middle Holocene (7,500 – 4,500 years ago), climate was thought to be warmer and
  • 42. 33 drier than it is today (Grayson 2011). This regional trend favored the growth of desert shrubs over that of annual grasses, which would have likely increased the abundance of Atriplex in the local area (Grayson 2011). Theoretically, the current trend toward a warmer and more arid climate, indicated by higher δ18 O values as well as historical data (compiled by the Western Regional Climate Center), would also favor A. confertifolia growth and an increase in its abundance. This would be reflected within D. microps’ bone collagen as less negative δ13 C values with low deviation between individuals. This trend, however, was not found within the data. The majority of strata exhibited average δ13 C ranges of -19.53‰ to -16.44‰, values too high to represent diets composed entirely of shadscale leaves. Standard deviations within age groups fell between 0.67‰ and 2.82‰. This variation indicated that individual kangaroo rat diets were composed of unique proportions of certain types of plants, each with distinct δ13 C signatures. Despite correcting for the Seuss effect (Rubino et al. 2013), modern δ13 C values—ages 1, 7, and 25 years—were still more negative than older samples, indicating a true biological shift as opposed to an abiotic signal driven by anthropogenic burning of fossil fuels. The diets of these individuals likely included a combination of A. confertifolia (C4) leaves and seeds or leaves from C3 plants (median δ13 C value of -27‰). The relatively more negative δ13 C values of C3 plants would draw down the average value of modern strata. An increase in abundance of C3 plants in the Great Basin would also impact these values. Bromus tectorum, commonly called cheatgrass, is an invasive annual grass originating in Eurasia that has increased in abundance within D. microps’ habitat over the past century (Ostoja and Schupp 2009, Schaeffer et al. 2011). Appearing in North America in the late 1800s, cheatgrass has since covered approximately 40 million hectares, providing a continuous source of fuel for fires and placing sagebrush ecosystems and the native fauna that inhabit them at risk (Ostoja and Schupp 2009).
  • 43. 34 Employing the C3 photosynthetic pathway, cheatgrass exhibits a δ13 C value of -26.9‰ to -26.1‰ (Svejcar and Boutton 1985, Schaeffer et al. 2011). If the seeds of this plant were contributing to D. microps’ diet, a more negative δ13 C bone collagen value would be evident. Although it is possible that other C3 plants are contributing to the more negative modern δ13 C values, low variance in modern strata, compared to that of older strata, suggests that the diet of modern populations of D. microps is composed of fewer plant types than the diet of older populations. Therefore, it is likely that only a few C3 plants, or even just one, with fairly negative δ13 C values are pulling down the modern values. Because of this, it is possible that cheatgrass now represents an increasingly large portion of D. microps’ diet. The introduction and subsequent invasion of B. tectorum has resulted in decreased rodent abundance and richness within the Great Basin (Ostoja and Schupp 2009). For Heteromyids such as D. microps, the rapid expansion in cheatgrass abundance has caused a decrease in diversity of microhabitats, making it difficult for species which were once able to co-exist in the same area to continue to do so (Ostoja and Schupp 2009). In addition to experiencing the effects of climate change, ecosystems within the Great Basin are being upset by the introduction of invasive species such as cheatgrass, which force native species to adapt to ever increasing changes in their habitats. 4.3 δ15 N δ15 N values reportedly increase with decreasing precipitation and increasing temperature (Koch 2007), a climate trend indicated by higher δ18 O values. If climate were driving the δ15 N values recorded by D. microps specimens, one would expect to see a parallel relationship emerge in a cross-correlation analysis of δ15 N and δ18 O, with δ15 N values increasing as temperatures (and δ18 O values) rise over time. This pattern was not reflected in the δ15 N values of D. microps bone
  • 44. 35 collagen, which showed little to no relationship with the δ18 O data. Fluctuations in the δ15 N data are therefore not explained by changes in climate. δ15 N values can also be used to assess the amount of animal protein an organism consumes and therefore the trophic level at which it is feeding. In a preliminary study of multiple modern small mammal species at Two Ledges Chamber, Terry and Koch (unpublished) show that other species that coexist with D. microps in the Smoke Desert exhibit average δ15 N values between 6.9‰ and 13.07‰. Not surprisingly, the highest δ15 N values were exhibited by Onychomys torridus, a Murid rodent commonly called the Grasshopper Mouse, which feeds mainly on arthropods, insects, and other sources of animal protein (Langley 1987). Average δ15 N values for D. microps were, somewhat surprisingly, very similar to the average of O. torridus. Perognathus longimembris, the pocket mouse, is a member of the family Heteromyidae, to which D. microps also belongs. Unlike D. microps, however, this species is a granivore, not an herbivore. This species also exhibited relatively high δ15 N values compared to those of other small mammals found within the Great Basin. It would seem possible that some shared aspect of P. longimembris’ and D. microps’ physiology could account for the high δ15 N values exhibited by the two species (since neither is known to consume animal protein). However, Chaetodipus formosus, the long-tailed pocket mouse and another member of the family Heteromyidae, exhibited relatively low δ15 N values (in the expected range for a granivore), complicating the inference of a physiological characteristic that is shared between D. microps and its relatives. Thus, the high δ15 N values found in D. microps bone collagen deserves further exploration and might be explained, at least in part, by D. microps’ consumption of some source of animal protein. Interestingly, D. microps δ15 N values have been consistently high over the past 8,000 years at this site, indicating that consumption of animal protein (or some other mechanism responsible for enriching δ15 N in the bone collagen) is not a recent response to the known alteration of the resource base by cheatgrass.
  • 45. 36 4.4 Variance in δ13 C and δ15 N Variance in the δ13 C and δ15 N data, from approximately 1,500 years BP to the present, showed a parallel relationship with the lowest values for both isotopes occurring in modern strata, indicating a decrease in the range of food items consumed relative to the Holocene. The relationship between δ13 C and δ15 N variance for samples older than 1,500 years shifted from parallel to inverse. High variance in δ13 C corresponded to low variance in δ15 N, the opposite of which was also true. Within strata, this indicated that as the range of plants D. microps was consuming increased (indicated by an increase in δ13 C variance), the range of δ15 N sources (i.e. animal protein) decreased. This pattern may have resulted from changes in availability of food sources over time and might reflect shifts in the dominant strategy employed by D. microps to increase niche flexibility throughout its natural history. 4.5 Diastema Length Given a local trend of increasing temperature and decreasing precipitation (as evidenced by increasing δ18 O values), D. microps diastema length would be expected to decrease if the species were conforming to Bergmann’s rule. However, a cross-correlation analysis of δ18 O and body size showed no relationship between the two variables. There was very low variation in diastema length between strata with no apparent trends in size. Thus, these results did not affirm Bergmann’s rule. This result is notable because it indicates that D. microps is not experiencing a change in body size (which can reflect a physiological response to a changing environment), but suggests that D. microps is responding to changing conditions by shifting its dietary niche instead.
  • 46. 37 4.6 Conclusions Due to insignificant changes in body size over the study period, a physiological response by D. microps to changes in climate was not apparent. However, δ13 C values often fell outside of the expected C4 range, indicating that D. microps is capable of consuming plants other than A. confertifolia in the Great Basin in order to persist in places where the shrub may not grow. This behavioral adaptation allows D. microps to shift its niche, which means that the species is less of a dietary specialist than was previously thought. δ15 N values did not follow the trend expected from climate change and were also higher than would be expected of an organism consuming only plant leaves. Comparison of D. microps’ δ15 N values to sympatric species from the same location showed that the species could be consuming animal protein, another behavioral change that would allow D. microps to shift its niche. Possible sources of error within the study were accounted for by the removal of data for bones which had been diagenetically altered, as well as correcting for the Seuss effect in modern δ13 C values. However, several factors that could influence the reliability of the results likely remained. For example, selection of specimens was not random as analyses were conducted using the samples that were available (with preference for larger intact specimens likely to yield enough collagen for analysis). Sample sizes (numbers of bones per stratum) were also fairly small (N = 6), increasing the susceptibility of the results to outliers and stochasticity. Despite this, the results of this study are intriguing and the implications are important for understanding how animals persist on the landscape through periods of climate change. The ability of D. microps to shift its dietary niche means that the species will likely be somewhat buffered to current and future changes in climate and habitat availability in the Great Basin. Other species classified as niche specialists may also be capable of behavioral and/or physiological responses and thus may possess more of an ability to adapt to climate change than was previously thought. Understanding which species are capable of these responses and why
  • 47. 38 some may be more successful than others will allow us to predict the magnitude of the impact of a changing climate and to perhaps focus conservation efforts on species which are least likely to be able to adapt to our changing world.
  • 48. 39 LITERATURE CITED Baumgardener GD, Kennedy ML (1994) Patterns of morphometric variation in kangaroo rats (Genus Dipodomys). Journal of Mammalogy 75: 203-211, 10.2307/1382252 Benson L, et al. (2002) Holocene multidecadal and multicentennial droughts affecting Northern California and Nevada. Quaternary Science Reviews 21: 659-682, 10.1016/S0277- 3791(01)00048-8 Coltrain JB, Janetski JC (2013) The stable and radio-isotope chemistry of southeastern Utah Basketmaker II burials: dietary analysis using the linear mixing model SISUS, age and sex patterning, geolocation and temporal patterning. Journal of Archaeological Science 40: 4711- 4730 D. microps [photograph] (2010). Retrieved May 2014, from: http://www.mammalogy.org/dipodomys-microps-1691 Grayson D (2011) The Great Basin: a natural prehistory. Berkeley, CA: University of California Press. Hayssen V (1991) Dipodomys microps. Mammalian Species 389: 1-9. Jezkova T, Olah-Hemmings V, Riddle BR (2011) Niche shifting in response to warming climate after the last glacial maximum: inference from genetic data and niche assessments in the chisel- toothed kangaroo rat (Dipodomys microps). Global Change Biology 17: 3486-3502, 10.1111/j.1365-2486.2011.02508.x Kenagy, GJ (1973) Adaptations for leaf eating in the great basin kangaroo rat Dipodomys microps. Oecologia12.4: 383-412, 10.1007/BF00345050 Koch, PL (2007) Isotopic study of the biology of modern and fossil vertebrates. In R Michener and K Lajtha (Eds.), Stable isotopes in ecology and environmental science (pp. 99-154). Malden, MA: Blackwell Publishing Ltd. Langley WM (1987) Specializations in the predatory behavior of grasshopper mice (Onychomys leucogaster and O. torridus): a comparison with the golden hamster (Mesocricetus auratus). Journal of Comparative Psychology 101: 322-327, 10.1037/0735-7036.101.4.322 Map showing the Great Basin drainage basin as defined hydrologically. [Image] (2010). Retrieved May 2014 from: http://commons.wikimedia.org/wiki/File:Greatbasinmap.png Marshal JD, Brooks JR, Lajtha K (2007) Sources of variation in the stable isotopic composition of plants. In R Michener and K Lajtha (Eds.), Stable isotopes in ecology and environmental science (pp. 22-60). Malden, MA: Blackwell Publishing Ltd. Meiri S, Dayan T (2003) On the validity of Bergmann's rule. Journal of Biogeochemistry 30: 331- 351, 10.1046/j.1365-2699.2003.00837.x O’Leary MH (1988) Carbon isotopes in photosynthesis: fractionation techniques may reveal new aspects of carbon dynamics in plants. BioScience 38: 328-336, 10.2307/1310735
  • 49. 40 Ostoja SM, Schupp EW (2009) Conversion of sagebrush shrublands to exotic annual grasslands negatively impacts small mammal communities. Diversity Distrib. 15: 863-870, 10.1111/j.1472- 4642.2009.00593.x Pedicino LC, et al. (2002) Historical Variations in δ13 C leaf of Herbarium Specimens in the Southwestern U.S. Western North American Naturalist 62: 348-359. Post DM (2002) Using stable isotopes to estimate trophic position: models, methods and assumptions. Ecology 83: 703–718, 10.1890/0012-9658(2002)083[0703:USITET]2.0.CO;2 Rubino M, et al. (2013) A revised 1000 year atmospheric δ13 C -CO2 record from Law Dome and South Pole, Antarctica. Journal of Geophysical Research 118: 8482-8499, 10.1002/jgrd.50668 Sandquist DR, Ehleringer JR (1995) Carbon isotope discrimination in the C4 shrub Atriplex confertifolia along a salinity gradient. Great Basin Naturalist 55: 135-141. Schaeffer SM, et al. (2012) Effects of Bromus tectorum invasion on microbial carbon and nitrogen cycling in two adjacent undisturbed arid grassland communities. Biogeochemistry 111: 427-441, 10.1007/s10533-011-9668-x Spaulding AW (1990) Vegetational and climatic development of the Mojave Desert: The last glacial maximum to the Present. In JL Betancourt, TR Van Devender, and PS Martin (Eds.), Packrat Middens: The Last 40,000 Years of Biotic Change (pp. 200–239). Tucson, AZ: The University of Arizona Press. Svejcar T J, Boutton TW (1985) The use of stable carbon isotope analysis in rooting studies. Oecologia 67: 205-208, 10.1007/BF00384284 Sweeting C, et al. (2007) Effects of body size and environment on diet-tissue δ13 C fractionation in fishes. Journal of Experimental Marine Biology and Ecology 352: 165-176, 10.1016/j.jembe.2007.07.007 Terry, RC (2008) Raptors, Rodents, and Conservation Paleobiology. Doctoral Thesis. University of Chicago. Terry RC, et al. (2011) Predicting small mammal response to climatic warming: autecology, geographic range, and the Holocene fossil record. Global Change Biology 17: 3019-3034, 10.1111/j.1365-2486.2011.02438.x USDA, NRCS (2014) Shadscale saltbush plant guide. National Plant Data Team, Greensboro, NC 27401-4901 USA. Vander Zanden MJ, Rasmussen JB (2001) Variation in δ15 N and δ13 C trophic fractionation: Implications for aquatic food web studies. Limnol. Oceanogr. 46: 2061-2066.