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How the Web Has Weaved a Web of Interlinked Chemistry Data Antony Williams ACS Anaheim March 29 th  2011
Data on the Web
Where is Chemistry Online? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
How to Connect Chemicals…
Chemistry on the Internet ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
www.chemspider.com
Search for a Chemical
We Have Delivered the Vision ,[object Object],[object Object],[object Object]
How  Did We Build It? ,[object Object],[object Object],[object Object],[object Object],[object Object]
Inherited Errors ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
The Structure of Vitamin K?
MeSH ,[object Object]
The Structure of Vitamin K1?
What is the Structure of Vitamin K1?
CAS’s Common Chemistry
Wikipedia
 
 
ChEBI – Manual Curation
 
 
PubChem
 
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Public Domain Databases ,[object Object],[object Object],[object Object],[object Object],[object Object]
 
[object Object]
 
To report at Denver ACS… ,[object Object],[object Object],[object Object]
 
Vytorin: Ezetimibe/Simvastatin
Vytorin: Ezetimibe/Simvastatin
Vytorin: Ezetimibe/Simvastatin
Vytorin: Ezetimibe/Simvastatin
Vytorin: Ezetimibe/Simvastatin
Taxol: Paclitaxel  44  structures
Taxol: Paclitaxel  Bioassay  Data
Taxol: Paclitaxel  Bioassay  Data ,[object Object]
Drug Name Generic Name ChEBI ChemSpider CAS Com. Chem ChemIDPlus DailyMed DrugBank PubChem Wikipedia Spiriva Tiotropium Bromide No Hits  No Hits    4/0  Depakote Valproate semisodium        No Structure Basen Voglibose   No Hits  No Hits  2/1  Symbicort 1) Budesonide       8/1  Symbicort 2) Formoterol WRONG  No Hits    6/1  Vytorin 1) Ezetimibe   No Hits      Vytorin 2) Simvastatin       2/1  Taxol Paclitaxel       44/1  Thalidomid Thalidomide No Hits        Zocor Simvastatin       2/1  Crestor Rosuvastatin   No Hits    2/1 
Entity-Extraction and Mark-up
Entity-Extraction and Mark-up
Success Depends on Dictionaries
Nature Chemistry
RSC Prospect
Validated “Dictionaries” ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Extend the Vision ,[object Object],[object Object],[object Object],[object Object]
Integrate other services.. ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
 
Extend the Vision ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
How Did We Build It (cont.) ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Complex Data and Information
 
Kind Contributions!
Crowdsourcing “Vitamin H”
“ Curate” Identifiers
“ Curate” Identifiers
Crowdsourcing Works ,[object Object],[object Object],[object Object]
Accessibility and Reuse ,[object Object],[object Object]
All DBs should take comments!
Proof-of-concept curation sharing ,[object Object],[object Object]
The Social Network ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Social Networking Tools ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Chemistry Social Networking ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Drivers in the Social Network ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
The Alt-Metrics Manifesto ,[object Object]
Enabled by ORCID…
What will enhance OUR network? ,[object Object],[object Object],[object Object],[object Object]
RDF and the semantic web ,[object Object],[object Object],[object Object],[object Object],[object Object]
 
Enabled through InChIs
Mobile Support
Licensing “My Work” Online  ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Who declares data as Open? ,[object Object],[object Object],[object Object],[object Object]
Acknowledgments ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
ChemSpider Training Session ,[object Object],[object Object],[object Object],[object Object],[object Object]

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How the web has weaved a web of interlinked chemistry data final