Facilitating Standardization And Exchange Of Array Design 02 09 2004

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Facilitating Standardization And Exchange Of Array Design 02 09 2004

  1. 1. Facilitating Standardization and Exchange of Array Design MAGEML2ADF 2 nd September 2004
  2. 2. ADF To MAGE-ML conversion <ul><li>Creation: </li></ul><ul><li>header data </li></ul><ul><li>Feature/Reporter </li></ul><ul><li>CompositeSequence </li></ul><ul><li>And Links between DesignElement Objects/Entities </li></ul>
  3. 3. Next <ul><li>Add ADF exporter ( for automatic curation) </li></ul><ul><li>Add application specific checking ( mainly File structure) </li></ul><ul><ul><li>File name : ADF Reporter / Composite - FileFormat - ApplicationName </li></ul></ul><ul><ul><ul><li>FileFormat : text | workbook </li></ul></ul></ul><ul><ul><ul><li>ApplicationName : binding_site_identification | comparative_genomic_hybridization | snp_detection | gene_expression </li></ul></ul></ul><ul><ul><ul><li>+ a generic structure file in case of unknown application </li></ul></ul></ul>
  4. 4. Next (continued) <ul><li>Test the application </li></ul><ul><ul><li>ADFs with CompositeSequence </li></ul></ul><ul><ul><li>Large ADFs </li></ul></ul><ul><li>The MAGE-ML converter </li></ul><ul><ul><li>MGED ontology checking </li></ul></ul><ul><ul><li>… </li></ul></ul><ul><ul><li>Creation of the ADF structure following the structure file (application) </li></ul></ul>

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