Customizing Alfresco as a repository for medical images

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Customizing Alfresco as a repository for medical images

  1. 1. #5 Alfresco Customizing Alfresco as a repository for medical images Doc. v rc0.1 - 21/05/09 Wildan Maulana | wildan [at] tobethink.com
  2. 2. About Me • Freelance Consultant - Software Developer – System Integrator • Founder of OpenThink Labs • OSS Evangelist • Main Developer of OpenThink SAS • More Info : – Blog : http://wildanm.wordpress.com – Y! : hawking_123 – Gtalk : wildan.m – Mobile Phone : +6287884599249
  3. 3. THE ICE Projects • ICE stands for Image Collaboration Environment. The goal of the ICE project is to provide researchers a flexible, stable, reliable and user-friendly collaboration system for medical images. • The ICE project will deliver a solution that will be able to support different components: – Image acquisition – Communication – Image display and interpretation – Archival – Administration • It will enable the users to upload images into a repository in which they can examine images and add comments.
  4. 4. Image Acquisition • The acquisition of images will support the digital medical imaging modalities such as CT, MRI, PET, SPECT, ... Most of these devices use the Digital Imaging and Communication in Medicine (DICOM) standard. This is an international standard of definitions and methods for transferring information and images between devices.
  5. 5. Communication • LAN • WAN → Use accelerator
  6. 6. Image Display and Interpretation • Users have to be able to use interactive functions to perform various image manipulation and image processing actions like zoom and pan, image orientation, magnification, gray scale inversion, ... • ICE can be used to pass images to local image processing workstations on which the images can be analyzed with specific tools. • After the interpretation of the images, the user has to be able to give some comments. In this way it is possible to start a sort of discussion between different researchers on a specific image.
  7. 7. Archival • ICE should offer long-term and short-term storage. The short-term storage can be divided in two levels: – The new and most used files can be placed on a fast hard disk, images that are not often used will be placed on a slower disk. This can be done with a Hierarchical Storage Management (HSM) strategy. The software with HSM functionality manages the migration of stored images and data between the high-speed disk for the frequently used images and the slower disk for images that are not used that much. – The long-term storage can be done with a distant archive like an off-line tape library (SIDMS/TSM).
  8. 8. Administration • A powerful administration provides low maintenance for the administrators. This component is also responsible for strict legal requirements of the FDA (Federal Food Agency in the USA). • The administrators must be able to maintain the system in a structured, well organised manner.
  9. 9. JHove • JHove (the JSTOR/Harvard Object Validation Environment) is an extensible framework that is developed by JSTOR and the Harvard University Library. JHove uses a module for each file format. Howerver, JHove does not support any medical image format. Therefore we had to write extra modules for medical image formats (DICOM, Analyze 7,5 and LSM). • DICOM files must also be validated against VRS rules (Validation Rule Set). These rules specify the values that the metadata fields must contain, depending of the interest of the scientist. To achieve this, we had to program an extra utility in Alfresco based on an existing functionality of the proprietary software EXC. • One of the biggest advantages of using open-source software is the ability to use community projects, like the Image Finder. This Alfresco extension can perform a search for similar images (color, texture, etc.). We incorporated this extension in Alfresco and described how it can be used for medical reseach purposes.
  10. 10. Reference • Customizing Alfresco as a repository for medical images , Rachid Choukry, Katholieke Hogeschool Kempen (KHK)

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