NCAR Open Access Week

780 views

Published on

Talk given at National Center for Atmospheric Resources as part of Open Access Week.

Published in: Technology
  • Be the first to comment

NCAR Open Access Week

  1. 1. Friday, October 23, 2009
  2. 2. pick the most likely scenario circa 1990: (apologies to Jamie Boyle) Friday, October 23, 2009
  3. 3. Friday, October 23, 2009
  4. 4. Friday, October 23, 2009
  5. 5. Friday, October 23, 2009
  6. 6. “...we don’t ask what the incentive is for the electrons to leave home. we say that the current results from an emergent property of the system, which we call induction.” eben moglen Friday, October 23, 2009
  7. 7. “...we don’t ask what the incentive is for the electrons to leave home. we say that the current results from an emergent property of the system, which we call induction.” The question we ask is ‘what’s the resistance of the wire?’ eben moglen Friday, October 23, 2009
  8. 8. Friday, October 23, 2009
  9. 9. Friday, October 23, 2009
  10. 10. less likely in reality than the theoretical impossibilities of free software and wikipedia. Friday, October 23, 2009
  11. 11. 1. Happy Open Access Week! Friday, October 23, 2009
  12. 12. 1. Happy Open Access Week! (we’re a long, long, long way from being done) Friday, October 23, 2009
  13. 13. 8 years after Budapest... Friday, October 23, 2009
  14. 14. why is this still so hard? Friday, October 23, 2009
  15. 15. “Innovation makes enemies of all those who prospered under the old regime, and only lukewarm support is forthcoming from those who would prosper under the new. Their support is indifferent partly from fear and partly because they are generally incredulous, never really trusting new things unless they have tested them by experience.” Friday, October 23, 2009
  16. 16. “Innovation makes enemies of all those who prospered under the old regime, and only lukewarm support is forthcoming from those who would prosper under the new. Their support is indifferent partly from fear and partly because they are generally incredulous, never really trusting new things unless they have tested them by experience.” (machiavelli) Friday, October 23, 2009
  17. 17. the balance of power is shifting to the user of content. Friday, October 23, 2009
  18. 18. Friday, October 23, 2009
  19. 19. media company response: adjust the physical media. force the cd format. disable new digital formats. protect the business model. Friday, October 23, 2009
  20. 20. Friday, October 23, 2009
  21. 21. after all, it’s your music. Friday, October 23, 2009
  22. 22. now a computer company dominates the music industry. Friday, October 23, 2009
  23. 23. rip. mix. burn. after all, it’s your knowledge. Friday, October 23, 2009
  24. 24. self archiving Friday, October 23, 2009
  25. 25. OA publishing Friday, October 23, 2009
  26. 26. both roads are too concerned with the publishing, not the user... Friday, October 23, 2009
  27. 27. after all, it’s her knowledge. Friday, October 23, 2009
  28. 28. 2. the users are changing the system for us. Friday, October 23, 2009
  29. 29. registration certification dissemination preservation Friday, October 23, 2009
  30. 30. registration certification dissemination preservation Friday, October 23, 2009
  31. 31. Friday, October 23, 2009
  32. 32. registration certification dissemination preservation Friday, October 23, 2009
  33. 33. Friday, October 23, 2009
  34. 34. someone’s going to crack distributed peer review. Friday, October 23, 2009
  35. 35. Friday, October 23, 2009
  36. 36. 3. there is plenty of opportunity out there for scholarly societies and publishers... Friday, October 23, 2009
  37. 37. Friday, October 23, 2009
  38. 38. integration annotation federation Friday, October 23, 2009
  39. 39. 103 databases - just molecular biology Friday, October 23, 2009
  40. 40. better answers through better formats: mesh: pyramidal neurons select ?gene_name ?process_name where pubmed: journal articles { PropertyValue(?pubmed_record, ?p, mesh:D017966) PropertyValue(?article, sc:identified_by_pmid , ?pubmed_record) PropertyValue(?gene_record, sc:describes_gene_or_gene_product_mentioned_by, ?article) SubClassOf(?protein, some(ro:has_function, some(ro:realized_as, ?process))) SubClassOf(?process, or(go:GO_0007166, some(ro:part_of, go:GO_0007166)) entrez gene: genes SubClassOf(?protein, some(sc:is_protein_gene_product_of_dna_described_by,?gene_record)) Annotation(?gene_record,rdfs:label,{?gene_name}) } Annotation(?process,rdfs:label,?process_name) go: signal transduction Friday, October 23, 2009
  41. 41. DRD1, 1812 adenylate cyclase activation ADRB2, 154 adenylate cyclase activation ADRB2, 154 arrestin mediated desensitization of G-protein coupled receptor protein signaling pathway DRD1IP, 50632 dopamine receptor signaling pathway DRD1, 1812 dopamine receptor, adenylate cyclase activating pathway DRD2, 1813 dopamine receptor, adenylate cyclase inhibiting pathway GRM7, 2917 G-protein coupled receptor protein signaling pathway GNG3, 2785 G-protein coupled receptor protein signaling pathway GNG12, 55970 G-protein coupled receptor protein signaling pathway DRD2, 1813 G-protein coupled receptor protein signaling pathway ADRB2, 154 G-protein coupled receptor protein signaling pathway CALM3, 808 G-protein coupled receptor protein signaling pathway HTR2A, 3356 G-protein coupled receptor protein signaling pathway DRD1, 1812 G-protein signaling, coupled to cyclic nucleotide second messenger SSTR5, 6755 G-protein signaling, coupled to cyclic nucleotide second messenger MTNR1A, 4543 G-protein signaling, coupled to cyclic nucleotide second messenger CNR2, 1269 G-protein signaling, coupled to cyclic nucleotide second messenger HTR6, 3362 G-protein signaling, coupled to cyclic nucleotide second messenger GRIK2, 2898 glutamate signaling pathway GRIN1, 2902 glutamate signaling pathway GRIN2A, 2903 glutamate signaling pathway GRIN2B, 2904 glutamate signaling pathway ADAM10, 102 integrin-mediated signaling pathway GRM7, 2917 negative regulation of adenylate cyclase activity LRP1, 4035 negative regulation of Wnt receptor signaling pathway ADAM10, 102 Notch receptor processing ASCL1, 429 Notch signaling pathway HTR2A, 3356 serotonin receptor signaling pathway ADRB2, 154 transmembrane receptor protein tyrosine kinase activation (dimerization) PTPRG, 5793 transmembrane receptor protein tyrosine kinase signaling pathway EPHA4, 2043 transmembrane receptor protein tyrosine kinase signaling pathway NRTN, 4902 transmembrane receptor protein tyrosine kinase signaling pathway CTNND1, 1500 Wnt receptor signaling pathway ` Friday, October 23, 2009
  42. 42. turn ugly query code into a link http://hcls1.csail.mit.edu:8890/sparql/?query=prefix%20go%3A%20%3Chttp%3A%2F%2Fpurl.org%2Fobo%2Fowl%2FGO%23%3E %0Aprefix%20rdfs%3A%20%3Chttp%3A%2F%2Fwww.w3.org%2F2000%2F01%2Frdf-schema%23%3E%0Aprefix%20owl%3A %20%3Chttp%3A%2F%2Fwww.w3.org%2F2002%2F07%2Fowl%23%3E%0Aprefix%20mesh%3A%20%3Chttp%3A%2F%2Fpurl.org %2Fcommons%2Frecord%2Fmesh%2F%3E%0Aprefix%20sc%3A%20%3Chttp%3A%2F%2Fpurl.org%2Fscience%2Fowl %2Fsciencecommons%2F%3E%0Aprefix%20ro%3A%20%3Chttp%3A%2F%2Fwww.obofoundry.org%2Fro%2Fro.owl%23%3E%0A %0Aselect%20%3Fgenename%20%3Fprocessname%0Awhere%0A%7B%20%20graph%20%3Chttp%3A%2F%2Fpurl.org %2Fcommons%2Fhcls%2Fpubmesh%3E%0A%20%20%20%20%20%7B%20%3Fpaper%20%3Fp%20mesh%3AD017966%20.%0A %20%20%20%20%20%20%20%3Farticle%20sc%3Aidentified_by_pmid%20%3Fpaper.%0A%20%20%20%20%20%20%20%3Fgene %20sc%3Adescribes_gene_or_gene_product_mentioned_by%20%3Farticle.%0A%20%20%20%20%20%7D%0A%20%20%20graph %20%3Chttp%3A%2F%2Fpurl.org%2Fcommons%2Fhcls%2Fgoa%3E%0A%20%20%20%20%20%7B%20%3Fprotein%20rdfs %3AsubClassOf%20%3Fres.%0A%20%20%20%20%20%20%20%3Fres%20owl%3AonProperty%20ro%3Ahas_function.%0A %20%20%20%20%20%20%20%3Fres%20owl%3AsomeValuesFrom%20%3Fres2.%0A %20%20%20%20%20%20%20%3Fres2%20owl%3AonProperty%20ro%3Arealized_as.%0A %20%20%20%20%20%20%20%3Fres2%20owl%3AsomeValuesFrom%20%3Fprocess.%0A%20%20%20graph%20%3Chttp%3A%2F %2Fpurl.org%2Fcommons%2Fhcls%2F20070416%2Fclassrelations%3E%0A%20%20%20%20%20%7B%7B%3Fprocess%20%3Chttp %3A%2F%2Fpurl.org%2Fobo%2Fowl%2Fobo%23part_of%3E%20go%3AGO_0007166%7D%0A%20%20%20%20%20%20%20union %0A%20%20%20%20%20%20%7B%3Fprocess%20rdfs%3AsubClassOf%20go%3AGO_0007166%20%7D%7D%0A %20%20%20%20%20%20%20%3Fprotein%20rdfs%3AsubClassOf%20%3Fparent.%0A%20%20%20%20%20%20%20%3Fparent %20owl%3AequivalentClass%20%3Fres3.%0A%20%20%20%20%20%20%20%3Fres3%20owl%3AhasValue%20%3Fgene.%0A %20%20%20%20%20%20%7D%0A%20%20%20graph%20%3Chttp%3A%2F%2Fpurl.org%2Fcommons%2Fhcls%2Fgene%3E%0A %20%20%20%20%20%7B%20%3Fgene%20rdfs%3Alabel%20%3Fgenename%20%7D%0A%20%20%20graph%20%3Chttp%3A %2F%2Fpurl.org%2Fcommons%2Fhcls%2F20070416%3E%0A%20%20%20%20%20%7B%20%3Fprocess%20rdfs%3Alabel %20%3Fprocessname%7D%0A%7D&format=&maxrows=50 Friday, October 23, 2009
  43. 43. Friday, October 23, 2009
  44. 44. Friday, October 23, 2009
  45. 45. what’s in a name? Friday, October 23, 2009
  46. 46. Friday, October 23, 2009
  47. 47. Friday, October 23, 2009
  48. 48. integration annotation federation Friday, October 23, 2009
  49. 49. Friday, October 23, 2009
  50. 50. espresso coffee cafe kopi cafezinho latte koffee mocha americano Friday, October 23, 2009
  51. 51. converge on common names. “coffee” “cafe” http://ontology.foo.org/1234567 “kopi” Friday, October 23, 2009
  52. 52. Shakespeare: not a semantics guy. Friday, October 23, 2009
  53. 53. Friday, October 23, 2009
  54. 54. integration annotation federation Friday, October 23, 2009
  55. 55. Friday, October 23, 2009
  56. 56. translation from people, who tell stories, to the web of data and search engines Friday, October 23, 2009
  57. 57. 4. lots of legal resistance in the wire. Friday, October 23, 2009
  58. 58. © in relation to data... Friday, October 23, 2009
  59. 59. category errors Friday, October 23, 2009
  60. 60. Friday, October 23, 2009
  61. 61. Friday, October 23, 2009
  62. 62. Friday, October 23, 2009
  63. 63. Friday, October 23, 2009
  64. 64. Friday, October 23, 2009
  65. 65. what can you do? 1. lead the way (again). 2. solve locally, share globally. 3. fund the library as infrastructure. Friday, October 23, 2009
  66. 66. Friday, October 23, 2009
  67. 67. incrementalism in information is powerful. but it can always be disrupted. Friday, October 23, 2009
  68. 68. Friday, October 23, 2009
  69. 69. Friday, October 23, 2009
  70. 70. Friday, October 23, 2009
  71. 71. Friday, October 23, 2009
  72. 72. Friday, October 23, 2009
  73. 73. “i propose the seeming paradox that in science, private property is established by having its substance freely given to others…” Merton Friday, October 23, 2009
  74. 74. thank you john d. and catherine t. macarthur foundation ewing marion kauffman foundation chdi foundation omidyar network nike, inc. best buy, inc. yahoo!, inc. mountain equipment corporation sergey brin and anne wojcicki Friday, October 23, 2009
  75. 75. 22 october 2009 Friday, October 23, 2009

×