From prototypes to industry standards: Markup, semantic enhancements and automated dissemination of content from the viewp...
Who we are  &  what we do  (and why we are in ViBRANT?) <ul><li>Pensoft Publishers is a private independent enterprise (SM...
 
 
Semantic enhancements to published texts
 
 
So, we have already that...  of  5 But need to this......
Persistent Identifiers Open  Journal  System Submission Acceptance Revision Peer Review Publication DoI Distributed Metada...
What we will do in ViBRANT <ul><li>Establish an  automated publication workflow  (“ push-button submission ”)  of  taxon d...
Interdependencies with other WPs and partners <ul><li>Testing and development of a  published version of the TaxPub  XML S...
Who are our users & how will they engage? <ul><li>Taxonomists  as authors  of mansucripts  submitted  via the Scratchpads ...
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WP6 Overview: From prototypes to industry standards: Markup, semantic enhancements and automated dissemination of content from the viewpoint of a biodiversity publisher

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  • “ To set up the means, tools and infrastructure to produce a more rational and a more effective framework for European Biodiversity research”
  • “ To set up the means, tools and infrastructure to produce a more rational and a more effective framework for European Biodiversity research”
  • WP6 Overview: From prototypes to industry standards: Markup, semantic enhancements and automated dissemination of content from the viewpoint of a biodiversity publisher

    1. 1. From prototypes to industry standards: Markup, semantic enhancements and automated dissemination of content from the viewpoint of a biodiversity publisher Lyubomir Penev Pensoft Publishers info @ pensoft.net Workpackage 6 Scholarly publishing ViBRANT Virtual Biodiversity
    2. 2. Who we are & what we do (and why we are in ViBRANT?) <ul><li>Pensoft Publishers is a private independent enterprise (SME) </li></ul><ul><li>Launched in 1992: more than 650 books published, 85 % in English, mostly in biodiversity science and natural history, for authors from all around the world </li></ul><ul><li>Operates from two offices, in Sofia and Moscow, 12 employes </li></ul><ul><li>Launched its first open access journal ZooKeys (in zoological taxonomy) in July 2008; untill now, ZooKeys published 75 issues and more than 15,000 pages; with 42 issues published in 2010 ZooKeys became a weekly journal! </li></ul><ul><li>CrossRef member, ISI and Scopus covered , indexed in Zoological Record, DOAJ, CABI Abstracts, Google Scholar; the first taxonomy journal approved for archiving in PubMedCentral ; Impact Factor 1.133 in the 3rd year of existence </li></ul><ul><li>TRIADA – Pensoft’s digital publishing platform launched in November 2010 ( www.pensoft.net ) </li></ul> of 5
    3. 5. Semantic enhancements to published texts
    4. 8. So, we have already that... of 5 But need to this......
    5. 9. Persistent Identifiers Open Journal System Submission Acceptance Revision Peer Review Publication DoI Distributed Metadata Catalogues Metadata Authors GBIF Metadata Repository Biodiversity Data Journal The GBIF perspective Registry GBRDS
    6. 10. What we will do in ViBRANT <ul><li>Establish an automated publication workflow (“ push-button submission ”) of taxon descriptions from Scratchpads to ZooKeys and PhytoKeys ; </li></ul><ul><li>Establish a similar automated publication workflow of data paper manuscripts from GBIF </li></ul><ul><li>Develop and implement a platform for online open peer review and editorial process </li></ul><ul><li>Implement the workflows through the a newly established, open-access , next-generation journal - Biodiversity Data Journal </li></ul><ul><li>Review and implement various semantic Web enhancements to taxonomic papers (e. g., data publication, cross-linking, data integration between papers, facilitated automated discovery, indexing and aggregation, online mapping, and others). </li></ul><ul><li>Develope tools for automated dissemination of the published information automatically to biodiversity indexers and aggregators (EOL, FBIF, Plazi, ZooBank, IPNI, and many others) </li></ul><ul><li>Work with other publishers (especially society and museum journals) to promote and implement innovative publishing methods and tools </li></ul><ul><li>Last but not least, explore and implement the Wiki environment as publishing and dissemination tool </li></ul> of 5
    7. 11. Interdependencies with other WPs and partners <ul><li>Testing and development of a published version of the TaxPub XML Schema – the basis for the XML-based publication workflow; ensure compliance of TaxPub with Scratchpads and GBIF inputs and with dissemination outputs; ensure compliance with TaxonX and TaXMLit to provide standard outputs for end users (e.g., taxon treatments) (YEAR 1st) (NHM, GBIF, OU, KIT, JKI, WP4, WP8, ext.: Plazi) </li></ul><ul><li>Creating and implementing tools to provide a complete XML-based workflow , from submission, through online open peer review and editorial process, to publishing and automated dissemination (YEAR 2nd) (NHM, GBIF, KIT, OU; ext.: EOL, Plazi, Zoobank, Zoological Record, IPNI, Mycobank, Wikispecies, Wikimedia Commons, etc.) </li></ul><ul><li>Application of the workflow in the Biodiversity Data Journal and make it compliant to other journals (YEAR 3rd) (NHM, GBIF, WP5 (API design), WP8, etc.) </li></ul><ul><li>Promotion and outreach of what we do (WP3) </li></ul> of 5
    8. 12. Who are our users & how will they engage? <ul><li>Taxonomists as authors of mansucripts submitted via the Scratchpads , GBIF or other networks </li></ul><ul><li>Ecologists, conservationists, decision makers, all interested readers and end users of the published information </li></ul><ul><li>Bibliographic databases and archives (BHL, PubMedCentral and other) </li></ul><ul><li>Content management platform for indexing and aggregating biodiversity information (GBIF, EOL, Plazi, Wiki-environment, etc.) </li></ul><ul><li>Electronic registers of nomenclatural acts (IPNI, Mycobank, ZooBank) </li></ul><ul><li>End users of unforeseen range and scope – conservationosts, ecologists, NGOs, policy makers, governmental organisations) </li></ul><ul><li>Small-scale taxonomy publishers (e.g., society or museum journals) </li></ul> of 5 Usage e ngag e ment m etrics Website visits, & downloads Number of mansucripts submitted and published Number of datasets submitted and published Creating new jobs after ViBRANT and market progress

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