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Mouse genome browser comparison
- 2. ➢ ➢ ➢ ○○○ ➢ ○ ➢ Anthony Doran
- 9. Genome Assembly UCSC Gene Transmap Augustus Geneset Integration Manual Annotation Genome Alignments UCSC/Sanger UCSC University Greifswald Genome browsers HAVANA/ Gencode
- 10. Strain PE>40x 3kb 6kb 10kb 40kb 205kb Optical map PacBio WGS RNA-Seq PacBio cDNA 129S1/SvImJ A/J AKR/J BALB/cJ C3H/HeJ C57BL/6NJ CAST/EiJ CBA/2J DBA/2J FVB/NJ LP/J NOD/ShiLtJ NZO/HlLtJ PWK/PhJ SPRET/EiJ WSB/EiJ
- 11. ➢ ➢ ○ ➢ ○○ ➢ ○○ ➢
- 12. Strain Length N50 Largest 129S1/SvImJ 2,665,724,978 499,579 4,191,204 A/J 2,575,552,050 841,310 5,154,006 AKR/J 2,655,151,486 699,281 4,946,368 BALB/cJ 2,564,864,798 719,223 6,377,193 C3H/HeJ 2,652,482,740 830,262 5,460,279 C57BL/6NJ 2,767,519,225 1,376,403 10,647,821 CAST/EiJ 2,692,265,825 644,585 4,753,688 CBA/J 2,869,046,919 1,001,488 6,693,851 DBA/2J 2,535,344,396 497,937 5,792,774 FVB/NJ 2,489,840,365 231,286 2,492,086 LP/J 2,700,733,552 1,501,450 7,674,081 NOD/ShiLtJ 2,916,136,958 833,100 7,603,243 NZO/HlLtJ 2,629,894,720 455,398 3,441,695 PWK/PhJ 2,536,513,388 390,965 4,057,411 SPRET/EiJ 2,665,852,857 361,121 2,821,169 WSB/EiJ 2,667,768,295 783,034 5,847,529
- 13. Genome Assembly UCSC Gene Transmap Augustus Geneset Integration Manual Annotation Genome Alignments UCSC/Sanger UCSC University Greifswald UCSC Ensembl HAVANA/ Gencode
- 14. ➢ ○ ➢ ○ Benedict Paten, Mark Diekhans, Dent Earl, Joel Armstrong
- 15. Genome Assembly UCSC Gene TransMap Augustus Geneset Integration Manual Annotation Genome Alignments UCSC/Sanger UCSC University Greifswald UCSC Ensembl HAVANA/ Gencode
- 16. ➢ ➢ ➢ ➢ ➢ Benedict Paten, Mark Diekhans, Dent Earl, Joel Armstrong
- 17. Benedict Paten, Mark Diekhans, Dent Earl, Joel Armstrong
- 18. Benedict Paten, Mark Diekhans, Dent Earl, Joel Armstrong
- 19. Genome Assembly UCSC Gene TransMap Augustus Geneset Integration Manual Annotation Genome Alignments UCSC/Sanger UCSC University Greifswald UCSC Ensembl HAVANA/ Gencode RNA-Seq
- 20. ➢ ○ ➢ ○○ ➢ ○○ ➢ ○ ○ Mario Stanke Stefanie König
- 21. Mario Stanke Stefanie König
- 22. Genome Assembly UCSC Gene TransMap Augustus Geneset Integration Manual Annotation Genome Alignments UCSC/Sanger UCSC University Greifswald UCSC Ensembl HAVANA/ Gencode RNA-Seq
- 23. Genome Assembly UCSC Gene TransMap Augustus Geneset Integration Manual Annotation Genome Alignments UCSC/Sanger UCSC University Greifswald UCSC Ensembl HAVANA/ Gencode RNA-Seq
- 24. Genome Assembly UCSC Gene TransMap Augustus Geneset Integration Manual Annotation Genome Alignments UCSC/Sanger UCSC University Greifswald Genome browsers HAVANA/ Gencode RNA-Seq
- 25. Genome Assembly UCSC Gene TransMap Augustus Geneset Integration Manual Annotation Genome Alignments UCSC/Sanger UCSC University Greifswald Genome browsers HAVANA/ Gencode Ensembl/UCSC RNA-Seq
- 26. ➢ ○ ○ ➢ ○ ➢ ○ ➢ ○ ➢ ○ ➢ ○ ➢ ➢ 2014-2017 2015-2018