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A technical website audit is important for understanding why your site ranks - or doesn't rank - on search engines. Through a proper site audit, basic on-page information can be ascertained and evaluated, as can server-side issues, internal linking and your site's external back link profile.
This slide deck is from a presentation I gave at ClickZ Live Toronto on May 15, 2014.
It includes SEO tools - both paid and free - that I utilize while performing technical website audits. Some of the tools listed are free, most are paid.