IAGC Collaboration Wiki

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Presentation by Shuji Shigenobu at Pea Aphid Genome Annotation Workshop I in Princeton (July 14-15, 2008)

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  • IAGC Collaboration Wiki

    1. 1. IAGC Collaboration Wiki Shuji Shigenobu (Wiki Working Group) Princeton University JST PRESTO, Japan National Institute for Basic Biology Pea aphid genome annotation meeting July 14-15, 2008 (Princeton, NJ)
    2. 2. IAGC Collaboration Wiki <ul><li>The the portal website for the manual annotation of the pea aphid genome </li></ul>
    3. 3. IAGC Collaboration Wiki <ul><li>The portal website for the manual annotation </li></ul><ul><li>A vehicle for collaboration within annotation groups </li></ul><ul><li>Coordinate companion paper submission </li></ul><ul><li>Coordinate the main genome paper preparation </li></ul>4 Purposes Collaboration
    4. 4. What’s Wiki? <ul><li>A category of web-based collaboration software </li></ul><ul><ul><li>Anyone can create and edit webpage </li></ul></ul><ul><ul><li>Simple and easy editing </li></ul></ul><ul><li>Eamples: </li></ul>Wikipedia (Share knowledge) Open Source Software development (Share knowledge, code, file.)
    5. 5. IAGC Collaboration Wiki <ul><li>Any scientists </li></ul>Information flow Annotators, Paper authors AphidBase/GBrowse Wiki
    6. 6. Functions of IAGC Collaboration Wiki <ul><li>Information center </li></ul><ul><ul><li>IAGC provides useful and necessary information </li></ul></ul><ul><ul><ul><li>guidelines, training resources, announcements etc. </li></ul></ul></ul><ul><ul><li>Share knowledge </li></ul></ul><ul><ul><ul><li>any user can post articles and files </li></ul></ul></ul><ul><li>On-line work space </li></ul><ul><ul><li>Webpage (ex. summary page of email discussion) </li></ul></ul><ul><ul><li>Share files </li></ul></ul><ul><ul><li>Simultaneous editing by multiple users </li></ul></ul><ul><ul><li>Access control </li></ul></ul>
    7. 7. IAGC Wiki Usage Training <ul><li>Q . Who should learn the usage? </li></ul><ul><li>A. All of YOU! </li></ul><ul><li>- All annotators & paper authors - Particularly group leaders should be familiar with it. </li></ul>
    8. 8. Case Study <ul><li>Mission: </li></ul><ul><ul><li>Summarize discussion on emails </li></ul></ul><ul><ul><li>Edit the summary page with other members </li></ul></ul><ul><ul><li>Upload gene list file, which is MS Excel </li></ul></ul><ul><ul><li>Setting permission so that only group member can access the page. </li></ul></ul>
    9. 9. Further information <ul><li>Technical Issue: </li></ul><ul><li>Go to the developer website </li></ul><ul><li>Confluence </li></ul><ul><ul><li>http://www.atlassian.com/software/confluence/ </li></ul></ul><ul><li>Contents Issue: </li></ul><ul><li>Contact IAGC Collaboration Wiki WG </li></ul><ul><li>Shuji Shigenobu, Jing-Jiang Zhou, John Colbourne, Alex Wilson </li></ul>
    10. 10. Final Message <ul><li>To utilize IAGC Collaboration Wiki is a key to successful community annotation </li></ul>Happy Collaboration & Happy Genome Hacking!

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