YamBase phenotyping workflow demo

solgenomics

•1 like•757 views

YamBase
Create list of selected progenies

YamBase
View lists of accessions and traits

YamBase
Tablet drive: fieldbook directory

YamBase
Copy layout file into field_import
directory

YamBase
Copy trait file into trait directory

YamBase
Upload field Map
View file format

YamBase
Field map file format
Prepare: 85_layout.txt - Excel Save: 85_layout.txt - Excel

● Create a biparental cross with 12 progenies
● Create a list of accessions on the cross detail page
● Create a list of traits with the wizard
● Make a trial with the list of accessions
● Create a fieldbook layout file from the trial
● Download fieldbook layout file
● Create a fieldbook trait file from the list of traits
● Download the trait file.
● Transfer layout and trait files to the tablet
● Import layout and trait files into Fieldbook App
● Record some data
● Export the data from the fieldbook and transfer back to the
computer
● Upload the fieldbook phenotypes to YamBasease
● Upload the trial coordinates for the created trial
Exercises

YamBase
YAMBASE
Creating Genotyping Trials

YamBase
YAMBASE
Uploading Historic Trials

YamBase
Phenotyping workflow
Accessions
To Be Tested
Trial Creation
Fieldbook
Creation
Traits List
Creation
Phenotyping
Import and
Setup Trial in
Fieldbook App.
Transfer files to
Nexus Tablet
&
Export
Phenotype
Upload
Phenotype
YAMBASE.ORG
Historic Phenotype
Upload

YamBase
Upload phenotype for uploaded trial

YamBase
Used files
FIELD LAYOUT FILE PHENOTYPE FILE

Acknowledgements
Lukas
Mueller
Bryan
Ellerbrock
Naama
Menda
Isaak
Tecle
Nick
Morales
Guillaume
Bauchet
BMGF

YamBase phenotyping workflow demo

•1 like•757 views

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YamBase phenotyping workflow demo

1. YAMBASE Phenotyping Workflow Demo

2. YamBase Add Accessions

3. YamBase Add Accessions

4. YamBase Add Accessions

5. YamBase Add Accessions

6. YamBase Add Accessions

7. YamBase Available Cross types

8. YamBase Create a Cross

9. YamBase Create a Cross

10. YamBase Create a Cross

11. YamBase Create a Cross

12. YamBase Create list of selected progenies

13. YamBase Create list of selected progenies

14. YamBase Make a list of traits

15. YamBase View lists of accessions and traits

16. YamBase Available trial types

17. YamBase Create a trial

18. YamBase Create a trial

19. YamBase Create a trial

20. YamBase Create a trial

21. YamBase Create a trial

22. YamBase Create a field book layout file

23. YamBase Fieldbook app tools

24. YamBase Fieldbook app info and download

25. YamBase Android FieldBook App download

26. YamBase Download fieldbook layout file

27. YamBase Create fieldbook trait file

28. YamBase Download fieldbook trait file

29. YamBase Downloaded files

30. YamBase Tablet drive

31. YamBase Tablet drive: fieldbook directory

32. YamBase Copy layout file into field_import directory

33. YamBase Copy trait file into trait directory

34. YamBase Fieldbook App

35. YamBase Import layout

36. YamBase Import layout

37. YamBase Import traits

38. YamBase Import traits

39. YamBase Import traits

40. YamBase Import traits

41. YamBase Add profile

42. YamBase Start phenotyping

43. YamBase Export phenotype file

44. YamBase Copy export phenotype file

45. YamBase Upload exported phenotype

46. YamBase Upload exported phenotype

47. YamBase View uploaded phenotype

48. YamBase Upload field Map View file format

49. YamBase Field map file format Prepare: 85_layout.txt - Excel Save: 85_layout.txt - Excel

50. YamBase Upload field Map

51. YamBase View field Map

52. ● Create a biparental cross with 12 progenies ● Create a list of accessions on the cross detail page ● Create a list of traits with the wizard ● Make a trial with the list of accessions ● Create a fieldbook layout file from the trial ● Download fieldbook layout file ● Create a fieldbook trait file from the list of traits ● Download the trait file. ● Transfer layout and trait files to the tablet ● Import layout and trait files into Fieldbook App ● Record some data ● Export the data from the fieldbook and transfer back to the computer ● Upload the fieldbook phenotypes to YamBasease ● Upload the trial coordinates for the created trial Exercises

53. YamBase YAMBASE Creating Genotyping Trials

54. YamBase Create genotyping trial

55. YamBase Create genotyping trial

56. YamBase Create genotyping trial

57. YamBase Create genotyping trial

58. YamBase Create genotyping trial

59. YamBase YAMBASE Uploading Historic Trials

60. YamBase Phenotyping workflow Accessions To Be Tested Trial Creation Fieldbook Creation Traits List Creation Phenotyping Import and Setup Trial in Fieldbook App. Transfer files to Nexus Tablet & Export Phenotype Upload Phenotype YAMBASE.ORG Historic Phenotype Upload

61. YamBase Trial upload

62. YamBase Trial upload

63. YamBase Trial upload

64. YamBase Trial upload

65. YamBase View uploaded trial

66. YamBase View uploaded trial

67. YamBase Upload phenotype for uploaded trial

68. YamBase Upload phenotype for uploaded trial

69. YamBase Upload phenotype for uploaded trial

70. YamBase Upload phenotype for uploaded trial

71. YamBase View uploaded phenotype

72. YamBase Used files FIELD LAYOUT FILE PHENOTYPE FILE