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YamBase phenotyping workflow demo

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YamBase phenotyping workflow demo

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YamBase phenotyping workflow demo

  1. 1. YAMBASE Phenotyping Workflow Demo
  2. 2. YamBase Add Accessions
  3. 3. YamBase Add Accessions
  4. 4. YamBase Add Accessions
  5. 5. YamBase Add Accessions
  6. 6. YamBase Add Accessions
  7. 7. YamBase Available Cross types
  8. 8. YamBase Create a Cross
  9. 9. YamBase Create a Cross
  10. 10. YamBase Create a Cross
  11. 11. YamBase Create a Cross
  12. 12. YamBase Create list of selected progenies
  13. 13. YamBase Create list of selected progenies
  14. 14. YamBase Make a list of traits
  15. 15. YamBase View lists of accessions and traits
  16. 16. YamBase Available trial types
  17. 17. YamBase Create a trial
  18. 18. YamBase Create a trial
  19. 19. YamBase Create a trial
  20. 20. YamBase Create a trial
  21. 21. YamBase Create a trial
  22. 22. YamBase Create a field book layout file
  23. 23. YamBase Fieldbook app tools
  24. 24. YamBase Fieldbook app info and download
  25. 25. YamBase Android FieldBook App download
  26. 26. YamBase Download fieldbook layout file
  27. 27. YamBase Create fieldbook trait file
  28. 28. YamBase Download fieldbook trait file
  29. 29. YamBase Downloaded files
  30. 30. YamBase Tablet drive
  31. 31. YamBase Tablet drive: fieldbook directory
  32. 32. YamBase Copy layout file into field_import directory
  33. 33. YamBase Copy trait file into trait directory
  34. 34. YamBase Fieldbook App
  35. 35. YamBase Import layout
  36. 36. YamBase Import layout
  37. 37. YamBase Import traits
  38. 38. YamBase Import traits
  39. 39. YamBase Import traits
  40. 40. YamBase Import traits
  41. 41. YamBase Add profile
  42. 42. YamBase Start phenotyping
  43. 43. YamBase Export phenotype file
  44. 44. YamBase Copy export phenotype file
  45. 45. YamBase Upload exported phenotype
  46. 46. YamBase Upload exported phenotype
  47. 47. YamBase View uploaded phenotype
  48. 48. YamBase Upload field Map View file format
  49. 49. YamBase Field map file format Prepare: 85_layout.txt - Excel Save: 85_layout.txt - Excel
  50. 50. YamBase Upload field Map
  51. 51. YamBase View field Map
  52. 52. ● Create a biparental cross with 12 progenies ● Create a list of accessions on the cross detail page ● Create a list of traits with the wizard ● Make a trial with the list of accessions ● Create a fieldbook layout file from the trial ● Download fieldbook layout file ● Create a fieldbook trait file from the list of traits ● Download the trait file. ● Transfer layout and trait files to the tablet ● Import layout and trait files into Fieldbook App ● Record some data ● Export the data from the fieldbook and transfer back to the computer ● Upload the fieldbook phenotypes to YamBasease ● Upload the trial coordinates for the created trial Exercises
  53. 53. YamBase YAMBASE Creating Genotyping Trials
  54. 54. YamBase Create genotyping trial
  55. 55. YamBase Create genotyping trial
  56. 56. YamBase Create genotyping trial
  57. 57. YamBase Create genotyping trial
  58. 58. YamBase Create genotyping trial
  59. 59. YamBase YAMBASE Uploading Historic Trials
  60. 60. YamBase Phenotyping workflow Accessions To Be Tested Trial Creation Fieldbook Creation Traits List Creation Phenotyping Import and Setup Trial in Fieldbook App. Transfer files to Nexus Tablet & Export Phenotype Upload Phenotype YAMBASE.ORG Historic Phenotype Upload
  61. 61. YamBase Trial upload
  62. 62. YamBase Trial upload
  63. 63. YamBase Trial upload
  64. 64. YamBase Trial upload
  65. 65. YamBase View uploaded trial
  66. 66. YamBase View uploaded trial
  67. 67. YamBase Upload phenotype for uploaded trial
  68. 68. YamBase Upload phenotype for uploaded trial
  69. 69. YamBase Upload phenotype for uploaded trial
  70. 70. YamBase Upload phenotype for uploaded trial
  71. 71. YamBase View uploaded phenotype
  72. 72. YamBase Used files FIELD LAYOUT FILE PHENOTYPE FILE
  73. 73. Acknowledgements Lukas Mueller Bryan Ellerbrock Naama Menda Isaak Tecle Nick Morales Guillaume Bauchet BMGF
  74. 74. THANK YOU.

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