YamBase phenotyping workflow demo

YAMBASE
Phenotyping Workflow Demo
YamBase
Add Accessions
YamBase
Add Accessions
YamBase
Add Accessions
YamBase
Add Accessions
YamBase
Add Accessions
YamBase
Available Cross types
YamBase
Create a Cross
YamBase
Create a Cross
YamBase
Create a Cross
YamBase
Create a Cross
YamBase
Create list of selected progenies
YamBase
Create list of selected progenies
YamBase
Make a list of traits
YamBase
View lists of accessions and traits
YamBase
Available trial types
YamBase
Create a trial
YamBase
Create a trial
YamBase
Create a trial
YamBase
Create a trial
YamBase
Create a trial
YamBase
Create a field book layout file
YamBase
Fieldbook app tools
YamBase
Fieldbook app info and download
YamBase
Android FieldBook App download
YamBase
Download fieldbook layout file
YamBase
Create fieldbook trait file
YamBase
Download fieldbook trait file
YamBase
Downloaded files
YamBase
Tablet drive
YamBase
Tablet drive: fieldbook directory
YamBase
Copy layout file into field_import
directory
YamBase
Copy trait file into trait directory
YamBase
Fieldbook App
YamBase
Import layout
YamBase
Import layout
YamBase
Import traits
YamBase
Import traits
YamBase
Import traits
YamBase
Import traits
YamBase
Add profile
YamBase
Start phenotyping
YamBase
Export phenotype file
YamBase
Copy export phenotype file
YamBase
Upload exported phenotype
YamBase
Upload exported phenotype
YamBase
View uploaded phenotype
YamBase
Upload field Map
View file format
YamBase
Field map file format
Prepare: 85_layout.txt - Excel Save: 85_layout.txt - Excel
YamBase
Upload field Map
YamBase
View field Map
● Create a biparental cross with 12 progenies
● Create a list of accessions on the cross detail page
● Create a list of traits with the wizard
● Make a trial with the list of accessions
● Create a fieldbook layout file from the trial
● Download fieldbook layout file
● Create a fieldbook trait file from the list of traits
● Download the trait file.
● Transfer layout and trait files to the tablet
● Import layout and trait files into Fieldbook App
● Record some data
● Export the data from the fieldbook and transfer back to the
computer
● Upload the fieldbook phenotypes to YamBasease
● Upload the trial coordinates for the created trial
Exercises
YamBase
YAMBASE
Creating Genotyping Trials
YamBase
Create genotyping trial
YamBase
Create genotyping trial
YamBase
Create genotyping trial
YamBase
Create genotyping trial
YamBase
Create genotyping trial
YamBase
YAMBASE
Uploading Historic Trials
YamBase
Phenotyping workflow
Accessions
To Be Tested
Trial Creation
Fieldbook
Creation
Traits List
Creation
Phenotyping
Import and
Setup Trial in
Fieldbook App.
Transfer files to
Nexus Tablet
&
Export
Phenotype
Upload
Phenotype
YAMBASE.ORG
Historic Phenotype
Upload
YamBase
Trial upload
YamBase
Trial upload
YamBase
Trial upload
YamBase
Trial upload
YamBase
View uploaded trial
YamBase
View uploaded trial
YamBase
Upload phenotype for uploaded trial
YamBase
Upload phenotype for uploaded trial
YamBase
Upload phenotype for uploaded trial
YamBase
Upload phenotype for uploaded trial
YamBase
View uploaded phenotype
YamBase
Used files
FIELD LAYOUT FILE PHENOTYPE FILE
Acknowledgements
Lukas
Mueller
Bryan
Ellerbrock
Naama
Menda
Isaak
Tecle
Nick
Morales
Guillaume
Bauchet
BMGF
THANK YOU.
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YamBase phenotyping workflow demo