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4.
YamBase
Outline
9:00 YamBase overview
9:30 Accounts and Logins
10:00 Searching YamBase
10:30 Working with list
11:00 The search Wizard
11:30 Introduction to Managing data using YamBase
12:00 Adding accessions, images and pedigree
12:30 Lunch
1:00 Adding Crosses
1:30 Trial creation and upload
2:00 Generating files for the Android field book
2:30 Upload phenotypic data from the fieldbook
3:00 Uploading field trial coordinates (field map)
3:30 Uploading historic data
4:00 session ends
5.
YamBase
Workshop
Hands-on
You are expected to use your laptop and
the YamBase test server
We would love to learn about your processes as a
way of feedback to further improve the database
6.
YamBase
YAMBASE
YamBase
What is new
Account request and login
8.
YamBase
Introduction
Central datastore
Provide breeders with tools
Globally accessible resource
Comprehensive information source
9.
YamBase
Why YamBase
Data Archiving
Data Accessibility
Data Integration
Data sharing
Better data analysis
Proper data curation
Data integrity
Good metadata information
13.
YamBase
YamBase Data Structure
Accessions Pedigree
data
Genotyping data
Trait dataPlots
Field data
Trials
14.
YamBase
Account Privileges
Account Type Privileges
none Browse, use tools
“user" User database, forum
“submitter"
create trials, add phenotype
information etc.
22.
YamBase
Exercise
Go to Yam test site
Yambase-test.sgn.cornell.edu
Go to ontology browser
Browser the Yam Ontology
Find the term “no. of setts planted”
How is it defined?
23.
YamBase
“Search” menu & Lists
Add list
Combine list
Make public and private
Accessions and plots
Trials
Wizard
Wizard download
52.
YamBase
Exercise
Go to wizard
Select “breeding program “ on the first select box and select “IITA”
Select “trials” in the second select box and select any two trials
Make list of common accessions in both trials. List name should be
“yourname_commonAccession”
Make list of accessions that are found in both trials. List name should be
“yourname_Accession”
Create an accession list with name “yourname_list”
Open to verify that the list type is set correctly
Edit the list
Set list to public
Combine yourname_list and yourname_commonAccessions
53.
YamBase
“Manage” menu
Crosses
Downloads
Breeding program
Locations
Accessions