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FYP Presentation
Using AI to autonomously identify diseases within groups of
patients
Main functions
 Using workflow to identify diseases(Already implemented on Phenoflow),
and validate the output with gold/silver standard.
 Using machinelearning algorithms to generate the silver standard
reference.
 Generate artificial data for testing purposes.
The Standard Workflow
 To start the workflow, the users need to have installed
the Cwltool and docker, and have both test cases
and gold reference present. testCases.csv
goldReference.csv
The Standard
Workflow
The Unsupervised
Learning Algorithms
 To start both machine
learning algorithms,the
users must have installed
scikit-learn.
 The unsupervisedlearning
algorithms can generate a
silver standard based on
the EHR data user provided.
The Supervised
Learning Algorithm
 Different to the
unsupervisedlearning
algorithm, the supervised
learning algorithm needs
the users to have the test
cases, the gold reference,
and the unclassifiedall
present.
File Generator

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Using AI to autonomously identify diseases within groups of patients

  • 1. FYP Presentation Using AI to autonomously identify diseases within groups of patients
  • 2. Main functions  Using workflow to identify diseases(Already implemented on Phenoflow), and validate the output with gold/silver standard.  Using machinelearning algorithms to generate the silver standard reference.  Generate artificial data for testing purposes.
  • 3. The Standard Workflow  To start the workflow, the users need to have installed the Cwltool and docker, and have both test cases and gold reference present. testCases.csv goldReference.csv
  • 5. The Unsupervised Learning Algorithms  To start both machine learning algorithms,the users must have installed scikit-learn.  The unsupervisedlearning algorithms can generate a silver standard based on the EHR data user provided.
  • 6. The Supervised Learning Algorithm  Different to the unsupervisedlearning algorithm, the supervised learning algorithm needs the users to have the test cases, the gold reference, and the unclassifiedall present.