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Open Notebook Science using Blogs and Wikis Jean-Claude Bradley E-Learning Coordinator  College of Arts and Sciences Drexel University March 27, 2007 American Chemical Society Symposium on Communicating Chemistry
Open and Closed Science Traditional Lab Notebook (unpublished) Traditional Journal Article Open Access Journal Article Open Notebook  Science (full transparency) CLOSED OPEN
Where is Science headed? WE ARE HERE
The Robot Scientist
Self-organizing redundant processes Agents can participate with zero or near-zero cost (free hosted services – e.g. Google) Fully Open Access (Read and Write) Publication of all aspects of the scientific process: Open Source Science /  Open Notebook Science Using semantically rich formats and automation at zero publication cost – is this the way to the technological singularity? How will this happen?
How can machines know what is important? Ask the humans
UsefulChem Blog
What chemists think is important in 2005
Find-A-Drug
Diketopiperazine Library Evolves to: on pot Ugi reaction/cyclization First iteration: Solid Support Synthesis
The Molecules Blog
The Experiments Blog
Comments from peers
The UsefulChem Wiki
Telling the story of the failures
Experiments moved to wiki
Experiment History
Experiment Edits
Third Party Time-Stamp on Experiment Versions
Monitoring experimental progress
How are people finding our experiments?
Molecules found by InChI
usefulchem.blogspot.com The blog as an integrative tool
usefulchem.wikispaces.com/Exp049 The wiki as the laboratory notebook
Open science connectivity More info on open source science here http://usefulchem.wikispaces.com
Automation in UsefulChem
CMLRSS feed on Bioclipse
Graphical Mining of Data with JSpecView usefulchem.wikispaces.com/Exp070 (48h 7 min)
Using ExcelVBA to automate kinetics analysis
Specify NMR regions and internal standard
NMR spectra of monitoring samples calculated
Reaction profile plotted automatically
UsefulChem in Second Life
Display blog post as poster
Click on Images for Descriptions
Click on the Blue Obelisk for a Chemistry Quiz Thanks Beth and Eloise!
neurodatabase.org Raw Experimental Data
Selected Experiments (some failed) Orgprepdaily.wordpress.com
Orgprepdaily.wordpress.com Vendor Reliability
Generalized Protocols Openwetware.org
Lab Notebook for intra-group communication Openwetware.org
Discussing Hypotheses RRResearch.blogspot.com
Feedback for the Automation Component Also – Rich Apodaca, Christoph Steinbeck, Peter Murray-Rust
 

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Open Notebook Science at ACS March07