ASTERICS : une application pour intégrer des données omiques

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ASTERICS : une application web pour intégrer des données
omiques
Élise Maigné, Nathalie Vialaneix
nathalie.vialaneix@i...

What is ASTERICS?
▶
▶ project (2020/2023) funded by
▶ with a case study contribution from
Tool designed for interactive an...

What we wanted to achieve
▶ make statistical methods (including integration methods) more easily available
▶ guide the (no...

Currently included features
▶ Import your dataset (only tabular formats)
Séminaire MIAT
2 décembre 2022 / Nathalie Viala...

Currently included features
▶ Import your dataset (only tabular formats)
▶ Edit your dataset
Séminaire MIAT
2 décembre 2...

Currently included features
▶ Import your dataset (only tabular formats)
▶ Edit your dataset
▶ Explore your dataset
Sémin...

Currently included features
▶ Import your dataset (only tabular formats)
▶ Edit your dataset
▶ Explore your dataset
▶ Visu...

Currently included features
▶ Import your dataset (only tabular formats)
▶ Edit your dataset
▶ Explore your dataset
▶ Visu...

Currently included features
▶ Import your dataset (only tabular formats)
▶ Edit your dataset
▶ Explore your dataset
▶ Visu...

Integrative analyses
Séminaire MIAT
2 décembre 2022 / Nathalie Vialaneix
p. 5

Integrative analyses
Séminaire MIAT
2 décembre 2022 / Nathalie Vialaneix
p. 5

How does it work?
The most dangerous part of the talk: the live demo...
https://asterics.miat.inrae.fr
Séminaire MIAT
2 d...

Behind the scenes
Backend: and Rserve
Séminaire MIAT
2 décembre 2022 / Nathalie Vialaneix
p. 7

Behind the scenes
Backend: and Rserve
↕
PyRserve and
(with and on the server side)
Séminaire MIAT
2 décembre 2022 / Nath...

Behind the scenes
Backend: and Rserve
↕
PyRserve and
(with and on the server side)
↕
Frontend: and
Séminaire MIAT
2 déce...

Behind the scenes
Backend: and Rserve
↕
PyRserve and
(with and on the server side)
↕
Frontend: and
Why this choice?
▶ Open...

Behind the scenes
Backend: and Rserve
↕
PyRserve and
(with and on the server side)
↕
Frontend: and
Why this choice?
▶ Open...

Main technical bottleneck from the side
Data communications between Rserve and PyRserve is restricted to characters,
numbe...

Main technical bottleneck from the side
Data communications between Rserve and PyRserve is restricted to characters,
numbe...

Main technical bottleneck from the side
Data communications between Rserve and PyRserve is restricted to characters,
numbe...

Deployment
First experience (for me) with
Séminaire MIAT
2 décembre 2022 / Nathalie Vialaneix
p. 9

Deployment
First experience (for me) with
Séminaire MIAT
2 décembre 2022 / Nathalie Vialaneix
p. 9

Deployment
First experience (for me) with
How does it work?
▶ three containers: (stabilized with renv), Python, and nginx
...

Deployment
Current deployment process (with 3 VMs):
▶ dev server: deployment is made directly by pulling the code of a spe...

Next steps
▶ a few bugs to fix
▶ a few other features to implement (metagenomics analyses are among them)
▶ test the deplo...

Online application: https://asterics.miat.inrae.fr
User documentation:
https://asterics.pages.mia.inra.fr/user_documentati...

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