dkNET Introductory Webinar 05/10/2017

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http://dknet.org 05/10/201705/10/2017
dkNET Introductory Webinar
Dr. Maryann Martone*
Dr. Ko-Wei Lin
University of Califor...

http://dknet.org 05/10/2017
Overview
● What is dkNET?
● Structure and content of dkNET
● Tutorial with 3 use cases
○ Find ...

http://dknet.org 05/10/2017
dkNET: NIDDK Information Network
A community resource and information portal
● For basic and c...

http://dknet.org 05/10/2017
Did you know there is a database for...
Database
Software Application
Data Analysis Service
To...

http://dknet.org 05/10/2017
dkNET makes them easy to search and browse
NIH RePORTER
ClinicalTrials.gov
NURSA
dkNET
NIH ReP...

http://dknet.org 05/10/2017
dkNET has 3 Primary Indices

http://dknet.org 05/10/2017
Community resources
NURSA
BCBC
DiaComp
GUDMAP
T1DBase
MMPC
NIDDK Central Repository
dkNET Comm...

http://dknet.org 05/10/2017
Autocomplete

http://dknet.org 05/10/2017
Results from
Community
Resources
Individual records
in snippet view
Category: Any
Options
Cate...

http://dknet.org 05/10/2017
Individual Records in Table Views
Use Facets to
refine search
Click Show More
Columns to see f...

http://dknet.org 05/10/2017
Search Tip #1 for dkNET: Faceted Search
Search tip:
Start with general term
Use the facets and...

http://dknet.org 05/10/2017
More Resources
Results from
More Resources
Tissue:
● OneMind: BioBanks
Data:
● ArrayExpress:
M...

http://dknet.org 05/10/2017
Literature
Results from
Literature

http://dknet.org 05/10/2017
Use cases:
1. I am a postdoc interested in pursuing metabolomic
research. How can I find infor...

Type 1 diabetes: One path
2. Select
“Funding”
1. Enter: Metabolomics into
the search bar
3. Click search
icon

http://dknet.org 05/10/2017
Category: Funding
Results from
Community
Resources
Navigation:
Click on “Any”
to remove
“Fundi...

http://dknet.org 05/10/2017

http://dknet.org 05/10/2017
Visualization tool to refine the results: Category
Graph

http://dknet.org 05/10/2017
Word Clouds

http://dknet.org 05/10/2017
Word Clouds

http://dknet.org 05/10/2017
Export the results

http://dknet.org 05/10/2017
dkNET Pilot Funding Databases

http://dknet.org 05/10/2017
Use cases:
1. I am a postdoc interested in pursuing metabolomic
research. How can I find infor...

http://dknet.org 05/10/2017
Input keywords:
Grant Code: R01
Funding Year: 2017
Funding Institute: Kidney
Click Project Num...

http://dknet.org 05/10/2017
Click Details to
find out study
sections

http://dknet.org 05/10/2017
Study section
Once you find the study
section, go to Query
Form

http://dknet.org 05/10/2017
Select Pathobiology of
Kidney Disease Study
Section

http://dknet.org 05/10/2017
Now you can find a list
of projects that were
funded by the same
study sections

http://dknet.org 05/10/2017
What study sections should I have reviewed
for this type of research?
● Let us know how we can...

http://dknet.org 05/10/2017
dkNET-NURSA Challenge
● A different approach to create and expand “big data for NIDDK”:
The im...

http://dknet.org 05/10/2017
Use cases:
1. I am a postdoc interested in pursuing metabolomic
research. How can I find infor...

http://dknet.org 05/10/2017
dkNET provides infrastructure for resource
identification
Resource Identification Initiative
●...

Why we needs RRID - Which antibody?
“The following antibodies were used for immunoblotting:
actin mAb (1:10,000 dilution, ...

http://dknet.org 05/10/2017
Creating tools for linking RRID’s to information on
research resources into the literature
Pro...

http://dknet.org 05/10/2017
NIH Rigor and Reproducibility @dknet.org

http://dknet.org 05/10/2017
While writing a grant application, NIDDK grant applicants should include:

http://dknet.org 05/10/2017
What dkNET can help you?
● To authenticate your resource, you need...
1. Properly identify you...

http://dknet.org 05/10/2017
Reproducibility Report

http://dknet.org 05/10/2017
Engage with the dkNET community
● Share your experience with us! Let us know what research res...

http://dknet.org 05/10/2017
Upcoming Webinar Ideas
● Advanced features: Collections, saved search, and updates notificatio...

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