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Libraries and digital   scholarship, documenting Open Notebook Science Jean-Claude Bradley May 20, 2009 Columbia University Associate Professor of Chemistry Drexel University Andrew Lang Professor of Mathematics Oral Roberts University
Outline  ONS and Digital Scholarship Roles and opportunities for Libraries
Open and Closed Science  Traditional Lab Notebook (unpublished) Traditional Journal Article Open Access Journal Article Open Notebook  Science (full transparency) CLOSED OPEN Traditional Paper Textbook F2F lectures Lectures Notes public Assigned problems public Archived Lectures Public and free online textbooks RESEARCH TEACHING
Motivation:  Faster Science,   Better Science
Open Notebook Science Logos  (Andy Lang, Shirley Wu) Sharing: how much and when
There are NO FACTS,  only measurements embedded within assumptions Open Notebook Science maintains the integrity of data provenance by making assumptions explicit
TRUST PROOF
The solubility of 4-chlorobenzaldehyde
The Log makes Assumptions Explicit
The Rationale of Findings Explicit
Raw Data Made Public Splatter? Some liquid
YouTube for demonstrating experimental set-up
Calculations Made Public on  Google Spreadsheets
Revision History on  Google Spreadsheets
Wiki Page History
Comparing Wiki Page Versions
Proof of Purity with interactive NMR spectrum using JSpecView and JCAMP-DX
Semi-Automated Measurement of solubility via web service analysis of JCAMP-DX files  (Andy Lang)
Indexing Molecules on Google
Linking to Molecules in Chemistry Databases
Experimental Spectra and User-Deposited Data on ChemSpider
Crowdsourcing Solubility Data
ONS Challenge Students
ONS Challenge Judges
Teaching Lab: Brent Friesen (Dominican University)
Solubility Experiment List
Summary of Solubility Experiments
Solubilities collected in a Google Spreadsheet
Rajarshi Guha’s Live Web Query using Google Viz API
From Wikipedia to…
… the lab notebook and raw data
Including links to the literature
Concentration (0.4, 0.2, 0.07 M) Solvent (methanol, ethanol, acetonitrile, THF) Excess of some reagents (1.2 eq.) Reaction to Optimize
Mettler-Toledo MiniMapper
Mettler-Toledo MiniBlock System
XML reports from MiniMapper robot
GoogleDoc to program and report
Paper written on Wiki
Paper on Journal of Visualized Experiments (JoVE)
References to papers, blog posts, lab notebook pages, raw data
Where’s the Beef?
Pre-print on Nature Precedings
ChemSpider Journal: Automated Mark-up of Chemical Names
 
Cameron Neylon’s Notebook Other Open Notebooks
Anthony Salvagno’s Notebook (Steve Koch group)
The Missing Pieces of the Puzzle Automatic Backup of Science 2.0 Data Archiving of Open Notebooks Science 2.0 Community Needed Resources - Preservation, Cataloging, Archiving, Cite-ability
The ONS backup spreadsheet and ONSPreserver
Publishing Google Spreadsheets as XLS
Automatic Backup of Data
Archiving Open Notebooks
Librarians and Science 2.0 "The Internet Archive is a 501(c)(3) non-profit that was founded to build an Internet library, with the purpose of offering permanent access for researchers, historians, and scholars to historical collections that exist in digital format." The internet Archive is not practical for practitioners of  Open Notebook Science  or  Science 2.0 
Good concept but.....
Most pages look like this....
Possible role for libraries:  citation to objective third party archives of digital scholarship
Acknowledgments Rajendra Bose (Columbia) Tim Bohinsky (Drexel) David Bulger (Oral Roberts) Rajarshi Guha (NIH) Jenny Hale (Southampton) Khalid Mirza (Drexel) Cameron Neylon (Southampton) Tom Osborne (Mettler-Toledo) Kevin Owens (Drexel) Antony Williams (ChemSpider)

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