Bio::Phylo - phyloinformatic analysis using perl

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Lightning talk for iEvoBio 2010 on the perl toolkit for managing and manipulation phylogenetic data.

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Bio::Phylo - phyloinformatic analysis using perl

  1. 1. Bio::Phylo  –        Phyloinformatic  analysis  using  Perl     Rutger  Vos  
  2. 2. Introduction   Bio::Phylo  is  a  BioPerl-­‐compa1ble  phyloinforma1c   toolkit  that  implements  EvoIO  concepts  and   technologies  
  3. 3. Use  Cases     PhyloInforma1c  workflows,   data  transforma1on     PhyloWS  servers  and   clients     Visualiza:on     Analysis  and  simula1on  of   tree  shapes  
  4. 4. Future  Directions     Tighter  integra1on  in  BioPerl     Extending  PhyloWS  func1onality     SWIG  backends,  e.g.  HyPhy,  NCL,  Beagle  
  5. 5. Learn  More     hKp://search.cpan.org/dist/Bio-­‐Phylo       Or  google  Bio::Phylo     Or  @rvosa     Computa1onal  Phyloinforma1cs:  A  BGI-­‐Shenzhen  and  NESCent   Course  (August  5-­‐17  2010)  
  6. 6. Acknowledgements     Jason  Caravas     Klaas  Hartmann     Mark  Jensen     Chase  Miller     Aki  Mimoto  

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