Otago vre-overview


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Otago vre-overview

  1. 1. OTAGO VRE VIRTUAL RESEARCH ENVIRONMENTRESEARCHER PRODUCTIVITY Open source code base platform built on top of SharePoint 2010 features.
  2. 2. Data Management Data Deposit Otago VRE Data VisualizationAuthoring Data Analysis Data Sharing
  3. 3. Project Trident Otago-VREDATA MANAGEMENTIntegrated Workflow Experience
  4. 4. Project Trident - a Scientific Workflow Workbench Share workflows via Author, Execute and Monitor Workflows Compose and modify workflows via drag & drop canvasView data products, performance Version 1.2 (Open Source under Apache 2.0 License):metrics, and provenance data http://tridentworkflow.codeplex.com/
  5. 5. Integrated Workflow Experienceresearchers can… • View/execute/monitor workflows within the context of project collaboration site • Receive alerts (email, SMS) when workflows complete • Browse workflow execution history and provenance information • Review/store/manage data files that are written back into SharePoint by Trident
  6. 6. Project Trident Otago-VREWord 2010 AUTHORING Include Data and Data artifacts in compound documents
  7. 7. Article Authoring Add-in for WordRead, convert, and author Repository depositNLM XML documents via SWORD ORE Resource Map creation v.2 beta 3: http://research.microsoft.com/authoring/
  8. 8. Zentity Project Trident Otago-VREWord 2010 DATA DEPOSIT SWORD client
  9. 9. Zentity - a Research Output Repository Platform Native support for RSS,A semantic computing platform to store and OAI-PMH, OAI-ORE,expose relationships between digital assets AtomPub and SWORDFlexible data model enablesmany scenarios and can beeasily extended over time v.1 (v.2 Tech Preview available soon!) : http://research.microsoft.com/zentity/
  10. 10. SWORD clientresearchers can… • Select any file: • Document • Presentation • Image • Data files • and publish it to any repository (via SWORD) • SWORD endpoints are managed as a custom list, so new locations are easily added
  11. 11. Archive this file in Repository X
  12. 12. Zentity Project Trident Otago-VREWord 2010 Excel 2010 DATA ANALYSIS through Excel 2010
  13. 13. selects DBs and input sequence Web Metagenomics Role Input Splitter Worker Role Using Azure cloud to host standard sequence data BLAST Execution BLAST Execution Run BLAST in parallel “map reduce” Worker Role #1 … Worker Role #n style for a large collection input Azure Blob Use Excel-based tool to search Storage BLAST DB Configuration . databases. Genom Genome e DB 1 Combiner DB K Worker Role• Performance: speedup• 45x with 50 roles; 94x with 100 roles;• with 300 roles computation time is reduced to 4 hours !
  14. 14. Zentity Project Trident Otago-VREWord 2010 DATA SHARING OData Protocol Excel 2010 OData
  15. 15. A RESTful Interface for DataJust HTTP• Items as resources, HTTP methods (GET, PUT, …) to act• Leverage proxies, authentication, ETags, …Uniform URL convention• Every piece of information is addressable• Predictable and flexible URL syntaxMultiple representations• Use regular HTTP content-type negotiation• JSON and Atom (full AtomPub support) http://www.odata.org
  16. 16. OData Producers OData Consumers• SharePoint 2010 • Web Browsers• IBM Websphere • Excel 2010• Windows Azure Table Storage • LinQPad & SQL Azure• Zentity 2.0 • Client libraries for• Services: – Javascript – Facebook Insights – PHP – Netflix – Java – Open Government Data – Windows 7 Phone Initiative – iPhone (Objective C) – Open Science Data Initiative – .NET – DBPedia http://www.odata.org
  17. 17. Zentity Project Trident Otago VRE VISUALIZING DATA PivotWord 2010 Excel 2010 OData
  18. 18. http://www.getpivot.com
  19. 19. Federated Search Experience• HTML to XML convertor• Open Search• OAI-PMH• OCLC• OData source• Extensibility for custom adapters