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ElN - repository integration at the University of Goettingen


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Pilot integration of the RSpace electronic lab notebook and the Dataverse repository at the University of Goettingen

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ElN - repository integration at the University of Goettingen

  1. 1. 14.06.2018 Dataverse Community Meeting 1 Pilot integration of an electronic lab notebook and an open source research data repository as part of a modular biomedical research data platform Harald Kusch, Sara Nußbeck, Péter Király, Rory Macneil Mercè Crosas,
  2. 2. 14.06.2018 Dataverse Community Meeting 2 Research Data Platform Integrative Data Management CRC 1002 Research Data Platform • Collection and interconnection of research data used in publications • Persistent resolvable access and long-term re-usability of CRC 1002 data • Data standardization for submission to public repositories • Data access: Development of Use & Access Policies
  3. 3. 14.06.2018 Dataverse Community Meeting 3 ELN data organization Cross-linking data in an ELN Mouse Line Catalogue Antibody Catalogue Cell Line Catalogue Echo Data RSpace Published Data Registry Research Group Filestores Web Resources (Databases, Catalogues) Research Group Databases
  4. 4. 14.06.2018 Dataverse Community Meeting 4 ELN data organization Example: Cross-linking data in an ELN
  5. 5. 14.06.2018 Dataverse Community Meeting 5 ELN data organization Structured documentation • Centralized protocols • Learning tool • Quickly shared • Metadata recording facilitated
  6. 6. 14.06.2018 Dataverse Community Meeting 6 ELN data organization Sustainability Implemented ORCID integration
  7. 7. 14.06.2018 Dataverse Community Meeting 7 ELN data export Sustainability Easy additional re-usable archiving strategies: Regular Data-Exports Most similar to paper, partially interactive => PDF-Format Most similar to ELN (Rspace), interactive => HMTL-Format Interoperability, human and machine readability => XML-Format Interfaces to repository software (e.g. Dataverse, DSPACE)
  8. 8. 14.06.2018 Dataverse Community Meeting 8 ELN data publishing Sustainability Three-click action: Data export into Dataverse repository
  9. 9. 14.06.2018 Dataverse Community Meeting 9 ELN documentation Sustainability Persistent identification via DOI and ORCID integration
  10. 10. 14.06.2018 Dataverse Community Meeting 10 Summary & Outlook • ELN facilitates digital data organization • Metadata schema application easily configurable and re-usable • Existing interfaces to repository software tools facilitate vendor-independent data sharing • Dataverse repository enables easy publishing of persistently identifiable datasets
  11. 11. 14.06.2018 Dataverse Community Meeting 11 Developments Needed ❖Conceptual ➢ Recognition of the benefits of ➢Connected ELNs as data organising tools ➢Enhanced ELN  repository workflow ❖ Practical ➢ Development of Repository APIs ➢ for highly organised, heterogeneous data ➢ ingestion, query, export Please come to our poster for further discussions!
  12. 12. 14.06.2018 Dataverse Community Meeting 12 Dr. Sara Nußbeck (TP INF-Leader IT) Prof. Dr. Blanche Schwappach (TP INF-Leader Research) Dr. Harald Kusch (PostDoc) Markus Suhr (B.Sc. Inf) Dr. Evelina De Laurentiis (PostDoc) CRC 1002/1190 INF team Georg Aschenbrandt Luca Freckmann Christian Henke Sophia Rheinländer Björn Hansen
  13. 13. 14.06.2018 Dataverse Community Meeting 13 Visit for further information. All icons used were designed using Freepik from and licensed under Creative Commons BY 3.0.;