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Xiaohong Gao (Middlesex University) – MIRAGE 2011 (developing an embedding visualization toolkit (for 3D images) and a plug-in for uploading queries)

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Presentation given at Repository Fringe 2011.

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Xiaohong Gao (Middlesex University) – MIRAGE 2011 (developing an embedding visualization toolkit (for 3D images) and a plug-in for uploading queries)

  1. 1. JISC<br />MIRAGE 2011:<br />RepoFringe 2011<br />August 4, 2011<br />Xiaohong (Sharon) Gao<br />Yu (Jade) Qian<br />Middlesex University<br />London NW4 4BT<br />Repository @ <br />http://image.mdx.ac.uk/vin/demo.php. <br />
  2. 2. JISC<br />Contents<br /><ul><li>Project communications
  3. 3. Dissemination
  4. 4. Progress so far
  5. 5. Next stage of work
  6. 6. Summary
  7. 7. Demo + Technical details</li></li></ul><li>JISC<br />1. Project communication (1)<br /><ul><li>Built on MIRAGE and MIRAGE 2011 – an FP7 People Marie Curie project WIDTH has been founded, which started on May 16, 2011.
  8. 8. WIDTH – Warehousing images in the digital hospital: interpretation, infrastructure, and integration.
  9. 9. Funding Scheme – staff exchange
  10. 10. project partners – 11 in total</li></li></ul><li>JISC<br />1. Project communication (2)<br />- Disciplinary-based repository:<br /><ul><li> IRMA – for bone age assessment (Germany)
  11. 11. http://ganymed.imib.rwth-aachen.de/irma/index_en.php</li></li></ul><li>JISC<br />1. Project communication (3)<br />- Disciplinary-based repository:<br /><ul><li> HRCT – for lung (Switzerland)</li></ul>- http://www.radiologyassistant.nl/en/42d94cd0c326b<br />
  12. 12. JISC<br />JISC<br />1. Project communication (5)<br />- Semantic-based repository:<br /><ul><li>i-SCoRe – (Greece)</li></ul>- http://www.medas.gr:8084/iscore<br />
  13. 13. JISC<br />2. Disseminations<br />X. Gao, Y, Qian, R. Hui, The State of the Art of Medical Imaging Technology: from Creation to Archive and Back, The Open Medical Informatics Journal, 5 : 93-85, 2011.<br />Y. Qian, X. Gao , M. Loomes, R. Comley, B. Barn, R. Hui, Z. Tian,Content-based Retrieval of 3D Medical Images,eTELEMED2011, February, 2011.<br />(Best paper award, has been invited to be extended to a journal paper by August 15).<br /> <br /> 3. X.W., Gao, Y. Qian, M. Loomes, R. Comley, B. Barn, A. Chapman, J. Rix, Texture-based 3D image retrieval for medical applications, IADIS e-Health2010, Freiburg, Germany, 29-31, July 2010.<br />
  14. 14. JISC<br />3. Enlarged Project Team<br />Two BioMed MSc students are working with us doing their final dissertations based on MRIAGE database.<br /><ul><li>Working on the evaluation of classification of images.
  15. 15. Working on user studies.</li></ul>2. One PhD student working on Path planning for neurosurgery.<br /><ul><li>Who used to be a neur-surgeon.</li></li></ul><li>JISC<br />4. Progress -- 3D Image retrieval (1) – adopting ParaView methodology<br />
  16. 16. JISC<br />4. Uploading images (2)<br />
  17. 17. JISC<br />5. Next stage of work<br />1. Digest 2D/3D Movie data.<br />2. User evaluations.<br />3. Reporting.<br />UltrasonixTABLET<br />Ultrasound scanner<br />MDX Grid Computing<br />
  18. 18. JISC<br />6. Summary<br />From students’ point of view, this repository has widened both their expectations and experiences, helping them to a large extent.<br />For us, the developers, it has been a great experience.<br />
  19. 19. JISC<br />Technical Aspects of MIRAGE<br />
  20. 20. JISC<br />7. MIRAGE<br />(Middlesex medical Image Repository with a CBIR ArchivinGEnvironment)<br /><ul><li>Phase 1(Apr.2009-Sep.2010):MIRAGE – from creationtoarchiving</li></ul>1)Middlesex medical image Repository: 100,000 2D images and 100 3D images<br />2) CBIR archiving environment: GIFTframework<br /><ul><li>Phase 2(Feb-Oct,2011):MIRAGE 2011 – from archiving to creation</li></ul> 1) 3D viewer<br /> 2) Upload images<br />Framework of MIRAGE:<br />
  21. 21. JISC<br />JISC<br />8. 3D Image retrieval (1) - interface<br />Montage<br />MIRAGE<br />MIRAGE 2011<br />
  22. 22. JISC<br />JISC<br />JISC<br />8. 3D Image retrieval (2) – adopting ParaView methodology<br /><ul><li>3D retrieval: </li></ul>Evaluate four 3D texture methods and detail in the published conference and journal papers. <br />
  23. 23. JISC<br />9. Image upload(1) - interface<br />MIRAGE<br />MIRAGE2011<br />
  24. 24. JISC<br />9. Image upload(2) – framework of query by upload image<br />
  25. 25. JISC<br />JISC<br />10: MIRAGE system for wallpaper image retrieval<br />
  26. 26. JISC<br />

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