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Introduction to PhAnToMe Workshop, 19th Evergreen Phage Meeting, 2011

An introduction to a tutorial on using the PhAnToMe (Phage Annotation Tools and Methods) website, databases (Phage SEED, Phage Metadata), and programs: phiRAST, PhageBioBIKE, and phiSIGNs

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PhAnToMe Workshop,[object Object],Phage AnnotationTools and Methods,[object Object],8/7/11,[object Object],PhAnToMe Workshop-Evergreen 2011,[object Object]
Outline,[object Object],Demonstration:,[object Object],PhAnToMe project,[object Object],PhAnToMe website,[object Object],Phage SEED,[object Object],Vocabulary (PEGs, Subsystems, FIGfams),[object Object],phiRAST,[object Object],Phage BioBIKE,[object Object],phiSIGNs,[object Object],Tutorial:,[object Object],Browse your favorite genome on SEED,[object Object],Check history and evidence, including similarities,[object Object],Align proteins,[object Object],Explore your phage coverage in metagenomes,[object Object],8/7/11,[object Object],PhAnToMe Workshop-Evergreen 2011,[object Object]
PhAnToMe Workshop,[object Object],Part IThe Phage SEED Database &The phiRAST Annotation Tool,[object Object],8/7/11,[object Object],PhAnToMe Workshop-Evergreen 2011,[object Object]
PhAnToMe: PHageANnotationTOols & MEthods,[object Object],NSF-funded project (2009-2012),[object Object],Goals:,[object Object],Develop an infrastructure and new tools to generate automated, high-quality annotations of available phage sequences,[object Object],Develop a resource through which the annotation and tools are made available to those who study phages in such a way that they can use them creatively,[object Object],Engage the insight of the research community to generate an even higher quality of annotation,[object Object],8/7/11,[object Object],PhAnToMe Workshop-Evergreen 2011,[object Object]
PhAnToMe: PHageANnotationTOols & MEthods,[object Object],NSF-funded project (2009-2012),[object Object],Outcomes:,[object Object],PhAnToMe website/portal (http://www.phantome.org),[object Object],Phage SEED (for already available phage genomes),[object Object],PhiRAST (for user-uploaded phage genomes),[object Object],Phage BioBIKE (Graphic programming interface to access phage SEED),[object Object],8/7/11,[object Object],PhAnToMe Workshop-Evergreen 2011,[object Object]
The PhAnToMe website,[object Object],Main features:,[object Object],Tools,[object Object],Downloads,[object Object],PhAnToMers,[object Object],Links & Databases,[object Object],FAQs & News,[object Object],(Labs),[object Object],8/7/11,[object Object],PhAnToMe Workshop-Evergreen 2011,[object Object]

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Introduction to PhAnToMe Workshop, 19th Evergreen Phage Meeting, 2011

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