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Talk by @phylogenomics at #LAMG16

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Talk by Jonathan Eisen for #LAMG16

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Talk by @phylogenomics at #LAMG16

  1. 1. #LAMG16 @phylogenomics Arrowhead and Microbial Genomes: Update on the Tree of Life September 18, 2016 Lake Arrowhead Microbial Genomes #LAMG16 Jonathan A. Eisen University of California, Davis @phylogenomics
  2. 2. TWO KEY THINGS TO REMEMBER #LAMG16 @phylogenomics Arrowhead and Microbial Genomes: Update on the Tree of Life September 18, 2016 Lake Arrowhead Microbial Genomes #LAMG16 Jonathan A. Eisen University of California, Davis @phylogenomics
  3. 3. TWO KEY THINGS TO REMEMBER #LAMG16 @phylogenomics Arrowhead and Microbial Genomes: Update on the Tree of Life September 18, 2016 Lake Arrowhead Microbial Genomes #LAMG16 Jonathan A. Eisen University of California, Davis @phylogenomics
  4. 4. #LAMG16 @phylogenomics Arrowhead and Microbial Genomes: Update on the Tree of Life September 18, 2016 Lake Arrowhead Microbial Genomes #LAMG16 Jonathan A. Eisen University of California, Davis @phylogenomics
  5. 5. #LAMG16 @phylogenomics Arrowhead and Microbial Genomes: Update on the Tree of Life September 18, 2016 Lake Arrowhead Microbial Genomes #LAMG16 Jonathan A. Eisen University of California, Davis @phylogenomics
  6. 6. #LAMG16 @phylogenomics The Tree of Life http://phylogenomics.blogspot.com
  7. 7. #LAMG16 @phylogenomics Arrowhead and Microbial Genomes: Update on the Tree of Life September 18, 2016 Lake Arrowhead Microbial Genomes #LAMG16 Jonathan A. Eisen University of California, Davis @phylogenomics
  8. 8. Arrowhead and Microbial Genomes: Update on the Tree of Life September 18, 2016 Lake Arrowhead Microbial Genomes #LAMG16 Jonathan A. Eisen University of California, Davis @phylogenomics THREE KEY THINGS TO REMEMBER #LAMG16 @phylogenomics
  9. 9. Origin of the Meeting • Who knows how the meeting started? #LAMG16 @phylogenomics
  10. 10. Origin of the Meeting • Who knows how the meeting started? • How could you find out? #LAMG16 @phylogenomics
  11. 11. Origin of the Meeting • Who knows how the meeting started? • How could you find out? • The Google … #LAMG16 @phylogenomics
  12. 12. Using the Google #LAMG16 @phylogenomics
  13. 13. Using the Google #LAMG16 @phylogenomics
  14. 14. Using the Google #LAMG16 @phylogenomics
  15. 15. Possible Source of Confusion #LAMG16 @phylogenomics Jeffrey van Leeuwenhoek Miller
  16. 16. History of the Meeting • See http:// www.lamg.info/ history #LAMG16 @phylogenomics Jeffrey van Leeuwenhoek Miller
  17. 17. History of the Meeting • And see http://microbe.net/lake-arrowhead- microbial-genomes-history/ for 1998-2016 notes • http://tinyurl.com/LAMG16 #LAMG16 @phylogenomics
  18. 18. Sampling from 1998-2014 #LAMG16 @phylogenomics
  19. 19. Sampling from 1998 #LAMG16 @phylogenomics
  20. 20. Sampling from 1998 #LAMG16 @phylogenomics
  21. 21. Sampling from 1998 #LAMG16 @phylogenomics
  22. 22. The Real Story of 1998? #LAMG16 @phylogenomics
  23. 23. 1998 - Doodles Reveal All #LAMG16 @phylogenomics
  24. 24. 1998 - Doodles Reveal All #LAMG16 @phylogenomics
  25. 25. 1998 - Doodles Reveal All #LAMG16 @phylogenomics
  26. 26. 1998 - Doodles Reveal All #LAMG16 @phylogenomics
  27. 27. 1998 - Doodles Reveal All #LAMG16 @phylogenomics
  28. 28. 1998 - Doodles Reveal All #LAMG16 @phylogenomics
  29. 29. 1998 - Doodles Reveal All #LAMG16 @phylogenomics
  30. 30. 1998 - Doodles Reveal All #LAMG16 @phylogenomics
  31. 31. 1998 - Doodles Reveal All #LAMG16 @phylogenomics
  32. 32. 1998 - Doodles Reveal All #LAMG16 @phylogenomics
  33. 33. 1998 - Doodles Reveal All #LAMG16 @phylogenomics
  34. 34. 1998 - Doodles Reveal All #LAMG16 @phylogenomics
  35. 35. 1998 - Doodles Reveal All #LAMG16 @phylogenomics
  36. 36. 1998 - Doodles Reveal All #LAMG16 @phylogenomics
  37. 37. 1998 - Doodles Reveal All #LAMG16 @phylogenomics
  38. 38. 1998 - Doodles Reveal All #LAMG16 @phylogenomics
  39. 39. 1998 - Doodles Reveal All #LAMG16 @phylogenomics
  40. 40. 1998 - Doodles Reveal All #LAMG16 @phylogenomics
  41. 41. 1998 - Doodles Reveal All #LAMG16 @phylogenomics
  42. 42. 1998 - Doodles Reveal All #LAMG16 @phylogenomics
  43. 43. 1998 - Doodles Reveal All #LAMG16 @phylogenomics
  44. 44. 1998 - Doodles Reveal All #LAMG16 @phylogenomics
  45. 45. 1998 - Doodles Reveal All #LAMG16 @phylogenomics
  46. 46. Real History of Arrowhead QUOTES, QUOTES, QUOTES #LAMG16 @phylogenomics
  47. 47. 2014 … #LAMG16 @phylogenomics
  48. 48. 2014 … • I am spending bioinformatic time up the wazoo #LAMG16 @phylogenomics
  49. 49. 2014 … • I am spending bioinformatic time up the wazoo • It may be sh*t to you but it's my bread and butter #LAMG16 @phylogenomics
  50. 50. 2002 #LAMG16 @phylogenomics
  51. 51. 2002 • Leave it to Jeff Miller to take a shot at the Gordon Conferences in his intro #LAMG16 @phylogenomics
  52. 52. 2002 • Leave it to Jeff Miller to take a shot at the Gordon Conferences in his intro • It looks like someone with a bad cold sneezed against the wall #LAMG16 @phylogenomics
  53. 53. 2002 • Leave it to Jeff Miller to take a shot at the Gordon Conferences in his intro • It looks like someone with a bad cold sneezed against the wall • Wild mistakes - brilliant guesses #LAMG16 @phylogenomics
  54. 54. 2002 • Leave it to Jeff Miller to take a shot at the Gordon Conferences in his intro • It looks like someone with a bad cold sneezed against the wall • Wild mistakes - brilliant guesses • He lied about the size of anthrax #LAMG16 @phylogenomics
  55. 55. 2002 • Leave it to Jeff Miller to take a shot at the Gordon Conferences in his intro • It looks like someone with a bad cold sneezed against the wall • Wild mistakes - brilliant guesses • He lied about the size of anthrax • If it grows you win, if it doesn’t you have to give me your soul for all eternity #LAMG16 @phylogenomics
  56. 56. 2002 • Leave it to Jeff Miller to take a shot at the Gordon Conferences in his intro • It looks like someone with a bad cold sneezed against the wall • Wild mistakes - brilliant guesses • He lied about the size of anthrax • If it grows you win, if it doesn’t you have to give me your soul for all eternity • That’s because she has the arrogance of the aristocrats #LAMG16 @phylogenomics
  57. 57. 2004 #LAMG16 @phylogenomics
  58. 58. 2004 • He wanted to keep his finger in the Chlamydia stuff #LAMG16 @phylogenomics
  59. 59. 2004 • He wanted to keep his finger in the Chlamydia stuff • Engineering other systems that don’t suck #LAMG16 @phylogenomics
  60. 60. 2004 • He wanted to keep his finger in the Chlamydia stuff • Engineering other systems that don’t suck • It’s like a tootsie pop #LAMG16 @phylogenomics
  61. 61. 2004 • He wanted to keep his finger in the Chlamydia stuff • Engineering other systems that don’t suck • It’s like a tootsie pop • Space time continuum of genes and genomes #LAMG16 @phylogenomics
  62. 62. 2004 • He wanted to keep his finger in the Chlamydia stuff • Engineering other systems that don’t suck • It’s like a tootsie pop • Space time continuum of genes and genomes • The wormhole that allows us to tunnel into today’s world #LAMG16 @phylogenomics
  63. 63. Other years • Space-time continuum of genes and genomes #LAMG16 @phylogenomics
  64. 64. Quotes • Space-time continuum of genes and genomes • Microbes not only have a lot of sex, they have a lot of weird sex #LAMG16 @phylogenomics
  65. 65. Quotes • Space-time continuum of genes and genomes • Microbes not only have a lot of sex, they have a lot of weird sex • Gene sequences are the wormhole that allows one to tunnel into the past #LAMG16 @phylogenomics
  66. 66. Quotes • Space-time continuum of genes and genomes • Microbes not only have a lot of sex, they have a lot of weird sex • Gene sequences are the wormhole that allows one to tunnel into the past • This is how you do metagenomics on 50 dollars, and that’s Canadian dollars #LAMG16 @phylogenomics
  67. 67. Quotes • Space-time continuum of genes and genomes • Microbes not only have a lot of sex, they have a lot of weird sex • Gene sequences are the wormhole that allows one to tunnel into the past • This is how you do metagenomics on 50 dollars, and that’s Canadian dollars • The human guts are a real milieu of stuff #LAMG16 @phylogenomics
  68. 68. Quotes • Space-time continuum of genes and genomes • Microbes not only have a lot of sex, they have a lot of weird sex • Gene sequences are the wormhole that allows one to tunnel into the past • This is how you do metagenomics on 50 dollars, and that’s Canadian dollars • The human guts are a real milieu of stuff • Antibiotics do not kill things, they corrupt them #LAMG16 @phylogenomics
  69. 69. Quotes • There comes a point in life when you have to bring chemists into the picture #LAMG16 @phylogenomics
  70. 70. Quotes • There comes a point in life when you have to bring chemists into the picture • The rectal swabs are here in tan color #LAMG16 @phylogenomics
  71. 71. Quotes • There comes a point in life when you have to bring chemists into the picture • The rectal swabs are here in tan color • If I have time I will tell you about a dream #LAMG16 @phylogenomics
  72. 72. Quotes • There comes a point in life when you have to bring chemists into the picture • The rectal swabs are here in tan color • If I have time I will tell you about a dream • Another thing you need to know" pause "Actually you don't NEED to know any of this #LAMG16 @phylogenomics
  73. 73. Quotes • There comes a point in life when you have to bring chemists into the picture • The rectal swabs are here in tan color • If I have time I will tell you about a dream • Another thing you need to know" pause "Actually you don't NEED to know any of this • I have been influenced by Fisher Price throughout my life #LAMG16 @phylogenomics
  74. 74. Quotes • There comes a point in life when you have to bring chemists into the picture • The rectal swabs are here in tan color • If I have time I will tell you about a dream • Another thing you need to know" pause "Actually you don't NEED to know any of this • I have been influenced by Fisher Price throughout my life • This is going to be ironic coming from someone who studies circumcision#LAMG16 @phylogenomics
  75. 75. Quotes • And we will bring out the unused cheese from yesterday #LAMG16 @phylogenomics
  76. 76. Quotes • And we will bring out the unused cheese from yesterday • A paper came out next year #LAMG16 @phylogenomics
  77. 77. Quotes • And we will bring out the unused cheese from yesterday • A paper came out next year • It takes 1000 nanobiologists to make one microbiologist #LAMG16 @phylogenomics
  78. 78. Quotes • And we will bring out the unused cheese from yesterday • A paper came out next year • It takes 1000 nanobiologists to make one microbiologist • In an engineering sense, the vagina is a simple plug flow reactor #LAMG16 @phylogenomics
  79. 79. Quotes • And we will bring out the unused cheese from yesterday • A paper came out next year • It takes 1000 nanobiologists to make one microbiologist • In an engineering sense, the vagina is a simple plug flow reactor • The human mind can conceive of things with no basis in physical reality #LAMG16 @phylogenomics
  80. 80. Quotes • And we will bring out the unused cheese from yesterday • A paper came out next year • It takes 1000 nanobiologists to make one microbiologist • In an engineering sense, the vagina is a simple plug flow reactor • The human mind can conceive of things with no basis in physical reality • Thoughts can go faster than the speed of light #LAMG16 @phylogenomics
  81. 81. Quotes • We are the environment. We live the phenotype. #LAMG16 @phylogenomics
  82. 82. Quotes • We are the environment. We live the phenotype. • We have been using this word for many years without actually realizing it was correct #LAMG16 @phylogenomics
  83. 83. Quotes • We are the environment. We live the phenotype. • We have been using this word for many years without actually realizing it was correct • A little bit about time, but I am going to spend a lot less time on time than on space #LAMG16 @phylogenomics
  84. 84. Quotes • We are the environment. We live the phenotype. • We have been using this word for many years without actually realizing it was correct • A little bit about time, but I am going to spend a lot less time on time than on space • I am going to wrap up as I hear the crickets chirping #LAMG16 @phylogenomics
  85. 85. 2004 #LAMG16 @phylogenomics
  86. 86. Sampling from 2004 #LAMG16 @phylogenomics
  87. 87. Sampling from 2004 #LAMG16 @phylogenomics
  88. 88. Sampling from 2004 #LAMG16 @phylogenomics
  89. 89. Sampling from 2004 #LAMG16 @phylogenomics
  90. 90. Sampling from 2004 #LAMG16 @phylogenomics
  91. 91. Sampling from 2004 #LAMG16 @phylogenomics
  92. 92. Sampling from 2004 #LAMG16 @phylogenomics
  93. 93. Sampling from 2004 #LAMG16 @phylogenomics
  94. 94. Sampling from 2004 #LAMG16 @phylogenomics
  95. 95. Trends in Topics #LAMG16 @phylogenomics
  96. 96. Topics Over Time 0 25 50 75 100 1998 2000 2002 2004 2006 2008 2010 2012 2014 2016 Genomes Communities Metagenomes Microbiomes
  97. 97. Topics Over Time 0 25 50 75 100 1998 2000 2002 2004 2006 2008 2010 2012 2014 2016 Genomes Communities Metagenomes Microbiomes
  98. 98. Topics Over Time 0 25 50 75 100 1998 2000 2002 2004 2006 2008 2010 2012 2014 2016 Genomes Communities Metagenomes Microbiomes
  99. 99. Topics Over Time 0 25 50 75 100 1998 2000 2002 2004 2006 2008 2010 2012 2014 2016 Genomes Communities Metagenomes Microbiomes
  100. 100. Topics Over Time 0 25 50 75 100 1998 2000 2002 2004 2006 2008 2010 2012 2014 2016 Genomes Communities Metagenomes Microbiomes
  101. 101. Topics Over Time 0 25 50 75 100 1998 2000 2002 2004 2006 2008 2010 2012 2014 2016 Genomes Communities Metagenomes Microbiomes
  102. 102. Topics Over Time 0 25 50 75 100 1998 2000 2002 2004 2006 2008 2010 2012 2014 2016 Genomes Communities Metagenomes Microbiomes
  103. 103. Topics Over Time 0 25 50 75 100 1998 2000 2002 2004 2006 2008 2010 2012 2014 2016 Genomes Communities Metagenomes Microbiomes
  104. 104. Topics Over Time 0 25 50 75 100 1998 2000 2002 2004 2006 2008 2010 2012 2014 2016 Genomes Communities Metagenomes Microbiomes
  105. 105. Topics Over Time 0 25 50 75 100 1998 2000 2002 2004 2006 2008 2010 2012 2014 2016 Genomes Communities Metagenomes Microbiomes
  106. 106. Possible Talks for 2016? #LAMG16 @phylogenomics
  107. 107. Possible Talks for 2018? #LAMG16 @phylogenomics
  108. 108. Microbiome Will GIVE The Talks #LAMG16 @phylogenomics
  109. 109. #LAMG16 Speakers #LAMG16 @phylogenomics

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