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EVE161: Microbial Phylogenomics - Class 7 - rRNA from the Environment

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Slides for EVE161 at UC Davis.
"Microbial Phylogenomics"
Taught by Jonathan Eisen and Cassie Ettinger.
Winter 2018.

Published in: Science
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EVE161: Microbial Phylogenomics - Class 7 - rRNA from the Environment

  1. 1. EVE 161:
 Microbial Phylogenomics Class #7: Era II: rRNA from the Environment UC Davis, Winter 2018 Instructor: Jonathan Eisen Teaching Assistant: Cassie Ettinger !1
  2. 2. Presenters for Today?
  3. 3. Terminology and Questions?
  4. 4. Differences Between the Papers?
  5. 5. Paper #1 !6
  6. 6. Lane et al. Abstract !7
  7. 7. Lane et al. Background: Why Sequences? !8
  8. 8. !9 Lane et al. Background: Why Sequences?
  9. 9. Lane et al. Background: Why rRNA !10
  10. 10. !11 Lane et al. Background: Why rRNA
  11. 11. Lane et al. Methods: How Get RNA !12
  12. 12. Methods: How Make Primers !13
  13. 13. Methods: Reverse Transcriptase !14
  14. 14. Methods: Nucleotides !15
  15. 15. Methods: Sequencing !16
  16. 16. Results and Discussion !17
  17. 17. Priming !18
  18. 18. Priming !19
  19. 19. Priming !20
  20. 20. Errors !21
  21. 21. Errors !22
  22. 22. Alignment !23
  23. 23. Phylogeny !24
  24. 24. !26
  25. 25. !27
  26. 26. !28
  27. 27. Stahl et al. Abstract !29
  28. 28. !30 Stahl et al. Introduction
  29. 29. Stahl et al. Introduction
  30. 30. !32 Stahl et al. Introduction
  31. 31. !33
  32. 32. Stahl et al. Methods !34
  33. 33. !35 Stahl et al. Methods
  34. 34. !36 Stahl et al. Methods
  35. 35. ` !37 Stahl et al. Methods
  36. 36. !38 Stahl et al. Results
  37. 37. !39 Stahl et al. Results
  38. 38. !40 Stahl et al. Results
  39. 39. !41 Stahl et al. Results
  40. 40. !42 Stahl et al. Results
  41. 41. !43 Stahl et al. Results
  42. 42. !44 Stahl et al. Results
  43. 43. !45 Stahl et al. Results
  44. 44. !46 Stahl et al. Results
  45. 45. !47 Stahl et al. Results
  46. 46. !48 Stahl et al. Results
  47. 47. !49 Stahl et al. Results
  48. 48. !50 Stahl et al. Results
  49. 49. !51 Stahl et al. Discussion
  50. 50. !52
  51. 51. !53 Stahl et al. Discussion
  52. 52. !54 Stahl et al. Discussion
  53. 53. !55 Stahl et al. Discussion
  54. 54. !56 Stahl et al. Discussion
  55. 55. !57 Stahl et al. Discussion
  56. 56. !58 Stahl et al. Discussion
  57. 57. !59 Stahl et al. Discussion
  58. 58. !60 Stahl et al. Discussion

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