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Phil Cryer Biodiversity Heritage Library Scripting Life : the science behind ViBRANT January 20-21, 2011 - Paris, France Biodiversity Heritage Library: Process & Progress

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<ul><ul><li>a consortium of global partners </li></ul></ul><ul><ul><li>aims to share historic biodiversity literature texts </li></ul></ul><ul><ul><li>provides open access of all content </li></ul></ul><ul><ul><li>free for all </li></ul></ul>Biodiversity Heritage Library (BHL) Biodiversity Heritage Library (BHL)

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bhl data stats

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<ul><li>Content </li></ul><ul><li>45,000 journals & monographs </li></ul><ul><li>8,821 in 2010 </li></ul><ul><li>87,000 volumes </li></ul><ul><li>15,552 in 2010 </li></ul><ul><li>32 million pages </li></ul><ul><li>5.6 million in 2010 </li></ul>

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<ul><li>Usage (2010) </li></ul><ul><li>837,000 visits </li></ul><ul><li>422,000 unique visitors </li></ul><ul><li>4.2 millions page views </li></ul><ul><li>221 countries/territories </li></ul>

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new features

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scanning request form click on ‘Feedback’ to access click on ‘Feedback’ to access click on ‘Feedback’ to access

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new user interface for names index sortable columns, exportable via CSV, BibTeX and Endnote

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downloadable article PDFs create articles from BHL books create articles from BHL books create articles from BHL books

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downloadable article PDFs 1- enter metadata about the article 1- enter metadata about the article 1- enter metadata about the article

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downloadable article PDFs 2- select the pages of the article 2- select the pages of the article 2- select the pages of the article

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downloadable article PDFs 3- PDF request received 3- PDF request received 3- PDF request received

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downloadable article PDFs 4- PDF article arrives via email 4- PDF article arrives via email 4- PDF article arrives via email

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CiteBank ( http://citebank.org ) open access repository for biodiversity publications open access repository for biodiversity publications open access repository for biodiversity publications

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CiteBank ( http://citebank.org ) Solr search with faceting Solr search with faceting Solr search with faceting

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CiteBank ( http://citebank.org ) individual bibliography page individual bibliography page individual bibliography page

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CiteBank features <ul><li>access the ‘crowd-sourced’ articles generated from the BHL scans (harvested from BHL) </li></ul><ul><li>platform for journals/publishers/societies in need of tools to store and share content </li></ul><ul><li>harvests metadata from Zookeys , SCiELO, Smithsonian collections nightly via OAI-PMH </li></ul><ul><li>new search index to BHL content using Solr </li></ul>

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CiteBank + BHL expands our core features <ul><li>content and tools for scholarly crowd-sourcing </li></ul><ul><ul><li>Users can get content they need, do minor work, share enhancements with community </li></ul></ul><ul><li>look to add more content integration with other existing platforms </li></ul><ul><ul><li>EOL, Atlas of Living Australia, JSTOR Plant Science, BioStor and others </li></ul></ul><ul><ul><li>Mendeley , Zotero, RefWorks, etc </li></ul></ul>

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<ul><li>enhancements to the portal home page </li></ul><ul><ul><li>More focus on search </li></ul></ul><ul><li>special collections </li></ul><ul><ul><li>Charles Darwin’s scientific library </li></ul></ul><ul><li>scholarly annotations </li></ul><ul><ul><li>annotations in Darwin’s hand and academic interpretation, crosslinking </li></ul></ul>More BHL features coming soon... More BHL features coming soon...

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bhl global

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Benefits of Global BHL partnerships <ul><li>redundancy and resilience </li></ul><ul><ul><li>data and app Mirroring </li></ul></ul><ul><li>exposing unique content </li></ul><ul><li>new tools, services, people </li></ul><ul><li>opportunities for new collaborations </li></ul><ul><ul><li>IMPACT, ViBRANT , OpenUp! in EU </li></ul></ul>

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storage clusters

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<ul><ul><li>all BHL data stored at the Internet Archive in San Francisco </li></ul></ul><ul><ul><li>no redundancy </li></ul></ul><ul><ul><li>limited in how we could serve our data and images </li></ul></ul><ul><ul><li>difficult to analyze data </li></ul></ul><ul><ul><li>First global BHL cluster gives us </li></ul></ul><ul><ul><li>redundancy and failover </li></ul></ul><ul><ul><li>many new serving options </li></ul></ul><ul><ul><li>new ways to run analytics, data mining </li></ul></ul>Storage issues solved using clusters Storage issues solved using clusters

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<ul><ul><li>open source software </li></ul></ul><ul><ul><li>Linux operating system </li></ul></ul><ul><ul><li>Gluster distributed storage system </li></ul></ul><ul><ul><li>commodity hardware </li></ul></ul><ul><ul><li>Supermicro servers </li></ul></ul><ul><ul><li>‘ off the shelf ’ hard drives and other system components </li></ul></ul>Open source software / commodity hardware Open source software / commodity hardware

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<ul><ul><li>BHL Cluster 01 </li></ul></ul><ul><ul><li>six 4U sized cabinets </li></ul></ul><ul><ul><li>twenty-four 1.5TB hard drives in each cabinet </li></ul></ul><ul><ul><li>97TB of replicated and distributed storage (over 200TB of raw disk) </li></ul></ul>BHL Cluster 01

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<ul><ul><li>find relationships </li></ul></ul><ul><ul><li>R GNU statistical language </li></ul></ul><ul><ul><li>Hadoop, Disco </li></ul></ul><ul><ul><li>make existing data more useful </li></ul></ul><ul><ul><li>image and OCR reprocessing, taxonfinder </li></ul></ul>Statistical computing

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data sharing

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<ul><ul><li>replicating BHL data globally </li></ul></ul><ul><ul><li>Marine Biological Laboratory (Woods Hole, US ) </li></ul></ul><ul><ul><li>National History Museum (London, UK ) </li></ul></ul><ul><ul><li>Bibliotheca Alexandrina (Alexandrina, EG ) </li></ul></ul><ul><ul><li>Atlas of Living Australia (Canberra, AU ) </li></ul></ul><ul><ul><li>China... Brazil... </li></ul></ul><ul><ul><li>advantages to replication </li></ul></ul><ul><ul><li>redundancy , failover </li></ul></ul><ul><ul><li>load balancing </li></ul></ul><ul><ul><li>geographical distribution </li></ul></ul>Data sharing and replication Data sharing and replication

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<ul><ul><li>grabby </li></ul></ul><ul><ul><li>handles initial download from Internet Archive (IA) </li></ul></ul><ul><ul><li>bhl-sync </li></ul></ul><ul><ul><li>open source Dropbox model </li></ul></ul><ul><ul><li>handles syncing remote nodes automatically </li></ul></ul><ul><ul><li>uses inotify, lsyncd, OpenSSH, rsync, unison </li></ul></ul><ul><ul><li>remote server only requires a secure login </li></ul></ul><ul><li>Open source code available at http://bit.ly/bhl-bits </li></ul>Software for data sync Software for data sync

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<ul><ul><li>digital repository platform </li></ul></ul><ul><ul><li>enables storage and management of digital content </li></ul></ul><ul><ul><li>maintains a persistent digital archive </li></ul></ul><ul><ul><li>stores data in a neutral manner </li></ul></ul><ul><ul><li>provides backup , redundancy, disaster recovery </li></ul></ul><ul><ul><li>shares data to remote nodes via OAI-PMH </li></ul></ul>Fedora-commons integration Fedora-commons integration

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future plans

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<ul><li>BHL is a member of CrossRef through The Smithsonian </li></ul><ul><li>will start assigning DOIs to BHL monographs </li></ul><ul><ul><li>easy, non-controversial provides open access of all content </li></ul></ul><ul><li>then move on to articles and other publication types </li></ul><ul><ul><li>CrossRef rules make full assignment challenging for crowd-sourced articles </li></ul></ul>Assigning DOIs (Digital Object Identifier) Assigning DOIs (Digital Object Identifier)

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<ul><li>OCR Correction </li></ul><ul><ul><li>a big problem , no easy solution </li></ul></ul><ul><li>add more content </li></ul><ul><ul><li>partnerships, CiteBank </li></ul></ul><ul><li>sustainability planning and funding </li></ul><ul><ul><li>committed to no fees for users </li></ul></ul><ul><li>more outreach </li></ul><ul><ul><li>conferences, marketing </li></ul></ul><ul><ul><li>Facebook, Twitter and other social media avenues... </li></ul></ul>Wish list for 2011 and beyond Wish list for 2011 and beyond

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<ul><ul><li>http://biodiversitylibrary.blogspot.com </li></ul></ul><ul><ul><li>http://twitter.com/BioDivLibrary #bhlib </li></ul></ul><ul><ul><li>http://facebook.com/pages/Biodiversity-Heritage-Library/63547246565 </li></ul></ul><ul><ul><li>http://flickr.com/groups/bhl </li></ul></ul><ul><ul><li>http://youtube.com/user/BioHeritageLibrary </li></ul></ul><ul><ul><li>http://biodiversitylibrary.org/RecentRss.aspx </li></ul></ul><ul><ul><li>http://slidesha.re/bhl-slides </li></ul></ul>BHL is social! BHL is social!

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slides : slidesha.re/bhl-slides contact : [email_address] Thanks. Phil Cryer : Biodiversity Heritage Library Scripting Life : the science behind ViBRANT January 20-21, 2011 - Paris, France