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Self-organization of the in vitro attached human embryo and its implications
Gist Croft, PhD
Brivanlou Laboratory of Stem Cell Biology and Molecular Embryology
The Rockefeller University
The Ethics of Early Embryo Research and the Future of the 14 Day Rule
Petrie-Flom Center, Harvard Law School
11 / 7 / 2016
Derived from the ICM of the blastocyst
Evans, Martin, Kauffman, 1981 (mouse), Thomson, 1998 (human)
iPSCs: reprogram somatic cells with pluripotency genes, Yamanaka, 2006
Pluripotent
Self-renewing
Experimental model of human development
Make cell types for cell-replacement and disease-modeling
Embryonic Stem Cells: Origins and Utility
NIH
Kang et al, 2009
(iPS mouse)
Need to understand early cell fate choices in vivo, origin and trajectory of ES cells
Human embryo development after implantation remains a black box
Zygote
D1
2-cell
D1-D2
4-cell
D2
Multi-cell
D3
Morula
D3-D4
Blastocyst
D5-6
Stage:
DPF:
Post-blastocyst
D7+
(B. Behr, Stanford IVF)
CS4 (DPF7) CS5C (DPF12) CS6 (DPF14-17): gastrulation
Mouse
Organizational landmarks of pre-gastrulation development: mouse vs. human
Mouse
Egg cylinder
Human
Germ
disc
Attached blastocyst
CS5B (DPF9)
Bilaminar disc Trilaminar disc
(Langman’s Medical Embryology; Human Embryology and Teratology)
New ex vivo models of
Be
Morris et al, 2012; Bedzhov et al, 2014a,b: Zernicke-Goetz LabKang et al, 2013; Schrode et al, 2014: Hadjantonakis Lab
New ex vivo approaches provide insights into early mouse embryo development
First and second cell fate decisions tissue morphogenesis and self organization
Can we adapt approach for in vitro culture of human blastocysts?
2013 Rockefeller IRB Protocol approved
culture
??
thaw
zona pellucida
removed
cryopreserved
blastocysts
blastocyst
2005 National Academies of Science 2005 and 2010 Stem Cell Research Guidelines:
bioethical consensus and mandate for in vitro culture up to DPF14 or primitive streak
2016 Deglincerti and Croft, et al. Nature
2104 consented donation of surplus IVF embryos for culture experiments
2015 first experiments
Human embryos attach and develop in vitro
DPF6 DPF8 DPF10 DPF12 DPF14
Deglincerti and Croft et al, Nature 2016
In vitro culture of the human blastocysts – DPF6
Scale bar = 50 um
ICM
Trophectoderm
Morphology: Phalloidin
ICM: OCT4, GATA6
TE: CDX2
DPF6
Number of cells: 267 ± 37 (n=8)
Deglincerti and Croft, et al, Nature 2016
The molecular signature of the human blastocyst is more
similar to the cow than the mouse
Mouse
blastocyst
Cow
blastocyst
Human
blastocyst
(Rossant, 2015)
Morphology: Phalloidin
ICM: OCT4; GATA6
TE: GATA3
DPF6
Number of cells: 267 ± 37 (n=8)
- GATA3 marks TE
- ICM cell-sorting incomplete
Deglincerti and Croft et al, Nature 2016
Morphology: Phalloidin, DAPI
ICM: NANOG; SOX17
DPF6
Number of cells: 267 ± 37 (n=8)
- Epi and PE specified
- ICM cell-sorting incomplete
Divergent transcriptional profile of mouse vs. human TE
ICM determinants similar
TE: GATA3+ OCT4LOW GATA6 LOW CDX2 LOW/VAR/CYTO
Mouse
Human
TE: CDX2+ GATA3+
ICM: NANOG OCT4 HI GATA6 HI/LOW SOX17
ICM: NANOG OCT4 HI GATA6 HI/LOW SOX17
Cartoon adapted from Nadine Schrode, Néstor Saiz, Stefano Di Talia, Anna-Katerina Hadjantonakis, MSKCC
What happens after DPF6?
DPF6
DPF7
Attachment occurs at ~DPF7.5, always on the side of the ICM
in vitro
in vivo
Deglincerti and Croft et al, Nature 2016
DPF8
Number of cells: 268 ± 8 (n=4)
ICM: OCT4; GATA6
TE: GATA3
- Compaction of the Epiblast
- Physical sorting of Epi and PE Deglincerti and Croft et al, Nature 2016
Mouse
Human
after attachment
before attachment
Second cell fate decision, ICM Epiblast vs. PE:
similar determinants; delay in human relative to mouse
Adapted from Nadine Schrode, Néstor Saiz, Stefano Di Talia, Anna-Katerina Hadjantonakis, MSKCC
DPF8 profiles
Epiblast
NANOG
OCT4 HI
PE
GATA6
SOX17
TE
GATA3
CDX2 LOW/VAR
DPF10
Number of cells: 890 ± 226 (n=4)
Morphology: Phalloidin
ICM: OCT4; GATA6
TE: GATA3; CDX2
Deglincerti and Croft et al, Nature 2016
DPF10: Epiblast cavitation amniotic cavity
Morphology: Phalloidin
ICM: OCT4; GATA6
TE: CDX2
Yolk sac TE
Yolk sac cavity
ICM: OCT4; GATA6
TE: GATA3; CDX2
DPF10: Yolk sac cavity, lined by a newly described human-specific
cell type (yolk sac TE cells)
OCT4LO/GATA6LO/CDX2+
Morphology: Phalloidin
CS5B (DPF9)
Bilaminar germ disc
CS5C (DPF12)
Deglincerti, Croft et al, Nature 2016
DPF10: First expression of CD24 in embryo; exclusively marks Epiblast
GATA3
CD24
GATA6
OCT4
Deglincerti, Croft et al, Nature 2016
DPF10: First timepoint Epi cells match hESC
DPF8: Second stage of TE lineage progression
ICM: OCT4
TE: CK7; HCGB
Deglincerti and Croft et al, Nature 2016
DPF10: Diversification of TE lineage: CTB and SCTB
ICM: OCT4
TE: CK7; HCGB
Deglincerti and Croft et al, Nature 2016
DPF12: further specialization of TE lineages
ICM: OCT4
TE: CK7; HCGB
DAPI GATA3 Phalloidin GATA3 Phalloidin HCGBDAPI DAPI
Deglincerti and Croft et al, Nature 2016
CS5C (DPF12)
Early and autonomous diversification of TE lineages in vitro
Different blastocyst transcriptional profiles and delayed ICM cell-sorting vs. mouse
ysTE, a new human-specific embryonic cell type
Autonomous formation of species-specific amniotic and yolk sac cavities
Embryo self-organization in the absence of maternal input after attachment
Self-organization of the in vitro attached human embryo
DPF10+ epiblast: new ex vivo benchmark for origin of hESCs
Future Directions
Reproductive and maternal fetal medicine
new measures of embryo quality
placental disorders
maternal fetal interface, immune tolerance
comparative embryology
Developmental roadmap of stem cell fate
epiblast: naïve, primed, germ layers and cells
PE
TE
Anticipation of gastrulation
molecular and geometric controls
prepatterning
Warmflash, et al, Nature Methods 2014; Etoc, et al, Developmental Cell 2016
Unresolved questions in embryonic stem cell biology
Why do hESC apparently differentiate in forward
and reverse (form TE-like cells)?
Why are naïve human pluripotent stem cells
elusive and what would they look like?
Day 0 Day 2, BMP4 treatment
OCT4DAPI CDX2 BRA SOX2
Human ES cell colony
Blastocyst
Pluripotent hESC 2days BMP4 induced “gastrulation” model
Comparison of cell fate regulation ex vivo and in vitro
Molecular markers
Signalling pathways
Cell polarity
Tissue architecture
DPF10
DPF12
What happens after DPF12?
ICM: OCT4
TE: CK7; HCGB
DAPI GATA3 Phalloidin GATA3 Phalloidin HCGBDAPI DAPI
Deglincerti, Croft et al, Nature 2016
CS5C (DPF12)
CS6 (DPF14-17): gastrulation
Morphology: Phalloidin
ICM: OCT4; GATA6
TE: GATA3
Croft et al, unpublished
CS6 (DPF14-17):
gastrulation
DPF14 Number of cells: 1012 ± 127 (n=8)
Transition to a volcano-shaped structure
Horseshoe distribution of cells
Centrifugal dispersion of cells
AcknowledgementsBlastocyst donors and IVF clinic
Alessia Deglincerti: co-first author
Ali Brivanlou and Eric Siggia
Magdalena Zernicka-Goetz
Kat Hadjantonakis,
Lauren Pietila Stephanie Tse, Corbyn Nchako
Cecilia Pelligrini: technical support
RU BIRC: Alison North, Pablo Ariel,
Kaye Thomas, Tao Tong
Amy Wilkerson: bioethics and IRB Protocol
Arlene Hurley and Donna Brassil
Hospital/IRB facilitation office
Supported by Starr foundation Tri-I Stem Cell Initiative grant and Rockefeller Private funds

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Gist Croft, "Self-organization of the in vitro attached human embryo and its implications"

  • 1. Self-organization of the in vitro attached human embryo and its implications Gist Croft, PhD Brivanlou Laboratory of Stem Cell Biology and Molecular Embryology The Rockefeller University The Ethics of Early Embryo Research and the Future of the 14 Day Rule Petrie-Flom Center, Harvard Law School 11 / 7 / 2016
  • 2. Derived from the ICM of the blastocyst Evans, Martin, Kauffman, 1981 (mouse), Thomson, 1998 (human) iPSCs: reprogram somatic cells with pluripotency genes, Yamanaka, 2006 Pluripotent Self-renewing Experimental model of human development Make cell types for cell-replacement and disease-modeling Embryonic Stem Cells: Origins and Utility NIH Kang et al, 2009 (iPS mouse) Need to understand early cell fate choices in vivo, origin and trajectory of ES cells
  • 3. Human embryo development after implantation remains a black box Zygote D1 2-cell D1-D2 4-cell D2 Multi-cell D3 Morula D3-D4 Blastocyst D5-6 Stage: DPF: Post-blastocyst D7+ (B. Behr, Stanford IVF)
  • 4. CS4 (DPF7) CS5C (DPF12) CS6 (DPF14-17): gastrulation Mouse Organizational landmarks of pre-gastrulation development: mouse vs. human Mouse Egg cylinder Human Germ disc Attached blastocyst CS5B (DPF9) Bilaminar disc Trilaminar disc (Langman’s Medical Embryology; Human Embryology and Teratology)
  • 5. New ex vivo models of Be Morris et al, 2012; Bedzhov et al, 2014a,b: Zernicke-Goetz LabKang et al, 2013; Schrode et al, 2014: Hadjantonakis Lab New ex vivo approaches provide insights into early mouse embryo development First and second cell fate decisions tissue morphogenesis and self organization
  • 6. Can we adapt approach for in vitro culture of human blastocysts? 2013 Rockefeller IRB Protocol approved culture ?? thaw zona pellucida removed cryopreserved blastocysts blastocyst 2005 National Academies of Science 2005 and 2010 Stem Cell Research Guidelines: bioethical consensus and mandate for in vitro culture up to DPF14 or primitive streak 2016 Deglincerti and Croft, et al. Nature 2104 consented donation of surplus IVF embryos for culture experiments 2015 first experiments
  • 7. Human embryos attach and develop in vitro DPF6 DPF8 DPF10 DPF12 DPF14 Deglincerti and Croft et al, Nature 2016
  • 8. In vitro culture of the human blastocysts – DPF6 Scale bar = 50 um ICM Trophectoderm
  • 9. Morphology: Phalloidin ICM: OCT4, GATA6 TE: CDX2 DPF6 Number of cells: 267 ± 37 (n=8) Deglincerti and Croft, et al, Nature 2016
  • 10. The molecular signature of the human blastocyst is more similar to the cow than the mouse Mouse blastocyst Cow blastocyst Human blastocyst (Rossant, 2015)
  • 11. Morphology: Phalloidin ICM: OCT4; GATA6 TE: GATA3 DPF6 Number of cells: 267 ± 37 (n=8) - GATA3 marks TE - ICM cell-sorting incomplete Deglincerti and Croft et al, Nature 2016
  • 12. Morphology: Phalloidin, DAPI ICM: NANOG; SOX17 DPF6 Number of cells: 267 ± 37 (n=8) - Epi and PE specified - ICM cell-sorting incomplete
  • 13. Divergent transcriptional profile of mouse vs. human TE ICM determinants similar TE: GATA3+ OCT4LOW GATA6 LOW CDX2 LOW/VAR/CYTO Mouse Human TE: CDX2+ GATA3+ ICM: NANOG OCT4 HI GATA6 HI/LOW SOX17 ICM: NANOG OCT4 HI GATA6 HI/LOW SOX17 Cartoon adapted from Nadine Schrode, Néstor Saiz, Stefano Di Talia, Anna-Katerina Hadjantonakis, MSKCC
  • 14. What happens after DPF6? DPF6 DPF7
  • 15. Attachment occurs at ~DPF7.5, always on the side of the ICM in vitro in vivo Deglincerti and Croft et al, Nature 2016
  • 16. DPF8 Number of cells: 268 ± 8 (n=4) ICM: OCT4; GATA6 TE: GATA3 - Compaction of the Epiblast - Physical sorting of Epi and PE Deglincerti and Croft et al, Nature 2016
  • 17. Mouse Human after attachment before attachment Second cell fate decision, ICM Epiblast vs. PE: similar determinants; delay in human relative to mouse Adapted from Nadine Schrode, Néstor Saiz, Stefano Di Talia, Anna-Katerina Hadjantonakis, MSKCC DPF8 profiles Epiblast NANOG OCT4 HI PE GATA6 SOX17 TE GATA3 CDX2 LOW/VAR
  • 18. DPF10 Number of cells: 890 ± 226 (n=4) Morphology: Phalloidin ICM: OCT4; GATA6 TE: GATA3; CDX2 Deglincerti and Croft et al, Nature 2016
  • 19. DPF10: Epiblast cavitation amniotic cavity Morphology: Phalloidin ICM: OCT4; GATA6 TE: CDX2
  • 20. Yolk sac TE Yolk sac cavity ICM: OCT4; GATA6 TE: GATA3; CDX2 DPF10: Yolk sac cavity, lined by a newly described human-specific cell type (yolk sac TE cells) OCT4LO/GATA6LO/CDX2+ Morphology: Phalloidin CS5B (DPF9) Bilaminar germ disc CS5C (DPF12) Deglincerti, Croft et al, Nature 2016
  • 21. DPF10: First expression of CD24 in embryo; exclusively marks Epiblast GATA3 CD24 GATA6 OCT4 Deglincerti, Croft et al, Nature 2016 DPF10: First timepoint Epi cells match hESC
  • 22. DPF8: Second stage of TE lineage progression ICM: OCT4 TE: CK7; HCGB Deglincerti and Croft et al, Nature 2016
  • 23. DPF10: Diversification of TE lineage: CTB and SCTB ICM: OCT4 TE: CK7; HCGB Deglincerti and Croft et al, Nature 2016
  • 24. DPF12: further specialization of TE lineages ICM: OCT4 TE: CK7; HCGB DAPI GATA3 Phalloidin GATA3 Phalloidin HCGBDAPI DAPI Deglincerti and Croft et al, Nature 2016 CS5C (DPF12)
  • 25. Early and autonomous diversification of TE lineages in vitro Different blastocyst transcriptional profiles and delayed ICM cell-sorting vs. mouse ysTE, a new human-specific embryonic cell type Autonomous formation of species-specific amniotic and yolk sac cavities Embryo self-organization in the absence of maternal input after attachment Self-organization of the in vitro attached human embryo DPF10+ epiblast: new ex vivo benchmark for origin of hESCs
  • 26. Future Directions Reproductive and maternal fetal medicine new measures of embryo quality placental disorders maternal fetal interface, immune tolerance comparative embryology Developmental roadmap of stem cell fate epiblast: naïve, primed, germ layers and cells PE TE Anticipation of gastrulation molecular and geometric controls prepatterning
  • 27. Warmflash, et al, Nature Methods 2014; Etoc, et al, Developmental Cell 2016 Unresolved questions in embryonic stem cell biology Why do hESC apparently differentiate in forward and reverse (form TE-like cells)? Why are naïve human pluripotent stem cells elusive and what would they look like? Day 0 Day 2, BMP4 treatment OCT4DAPI CDX2 BRA SOX2 Human ES cell colony
  • 28. Blastocyst Pluripotent hESC 2days BMP4 induced “gastrulation” model Comparison of cell fate regulation ex vivo and in vitro Molecular markers Signalling pathways Cell polarity Tissue architecture DPF10 DPF12
  • 29. What happens after DPF12? ICM: OCT4 TE: CK7; HCGB DAPI GATA3 Phalloidin GATA3 Phalloidin HCGBDAPI DAPI Deglincerti, Croft et al, Nature 2016 CS5C (DPF12) CS6 (DPF14-17): gastrulation
  • 30. Morphology: Phalloidin ICM: OCT4; GATA6 TE: GATA3 Croft et al, unpublished CS6 (DPF14-17): gastrulation DPF14 Number of cells: 1012 ± 127 (n=8) Transition to a volcano-shaped structure Horseshoe distribution of cells Centrifugal dispersion of cells
  • 31. AcknowledgementsBlastocyst donors and IVF clinic Alessia Deglincerti: co-first author Ali Brivanlou and Eric Siggia Magdalena Zernicka-Goetz Kat Hadjantonakis, Lauren Pietila Stephanie Tse, Corbyn Nchako Cecilia Pelligrini: technical support RU BIRC: Alison North, Pablo Ariel, Kaye Thomas, Tao Tong Amy Wilkerson: bioethics and IRB Protocol Arlene Hurley and Donna Brassil Hospital/IRB facilitation office Supported by Starr foundation Tri-I Stem Cell Initiative grant and Rockefeller Private funds